LOC110494288 (LOC106565560)


Basic Information

Item Value
gene id LOC110494288
gene name LOC106565560
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61730137 ~ 61734872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569232.2
GAGCTATATGGAGCCctacacattgttacaacatGTGTGAGGCGCACGGTGATGTGGTAGAGCTTGATTTGGCCTGTTAGCTGGACCATATTGCATCAAGCTTAAATCGGCCTTAGTTACACGCGTATGTTAACGCCGTATTAACGTTAGCGGACTTTTCTTAGCGGATTTACAATCATCGCGAATCGAATTAGGGGCGTTTCAGGCCCGacgtgaacataattgtacactcgcaaactcCATTAGAAACGAGGGCTAAGGGGCTTAagttgcaaacttcccttgcttggctaatcatttggactgACGACAAATATGGCTGCGGcgattcccccaagggcatatGACGAGGGTGTGTCTTTCAAGTGTTTGTACTGCAACCTATTCCCTAAGAATTTATGTCAGGAACTAAGAGGGGCAGCTAAAATGGGTCCTTCGTTCTTACGTCCTCAGATGCACTGACACAAAAAACGTGGGTTATGTGAACGATAAAGTAGTTgtgaaacagctagctagctatacaaTACCAAATTATTCTCCTTTTGTAATTGATAAAGTAGTATAACATCAGTCGGGAAACTCGGCACCGCAGGGACACCTTGAAGGGCACAACACGTCAGTAGACACCACACCGAAGAAATGTCCTCAGTCAAGGAGGAAGGTAAGGACCGTGTCATCTTTGTGACTAAGGAGGAACATGAAGCACCGAGCAACGCTGAGCTGGTGGAGGAGGATCCTGATGACCCCTATGAAGAACGAGGTCTGATCCTGCCCAATGGGGAGATCAACTGGAACTGCCCCTGTCTGGGAGGGATGGCCAGCGGTCCCTGTGGAGCATCGTTTAAGGAGGCCTTCTCCTGTTTCCACTACAGCAAGGAGGAGGTGAAGGGCTCAGAGTGCCTGGAGCAATTCAGGGGCATGCAGGAGTGTATGCAGAGATACCCAGAACTCTACCCCCAGGAGGATGACAAGGAGACCCAGGGAGGGCCATCTGAAACGGATCCTTCCAAACAAGACTCTGCCCCTGAACCAACCCCTACACCTGCGGCCCCTGTCCAAGACTCTAGTCCTTCCACCGCCCCTGCTGACACCCCACCACCTTCAAACAGCTCAGCCTCAGGATAAGCATGATTCACGACAAGCCCTTTCTATGGATGTGTTAAGGTGATCCTTTTTGTATCAATTATTTAAACTGATAAATGAAAGTGTTGACTATTCCCCCCCACTCTAACCCAGATTGGGTTTTCCCTCATAGAATATAAGATACTTGTAGAGGGAGGAGGGTAAGGAAAAAGATGGGGTAACTTCACTCTAGGTGTGTGTATATTTCTTTCTTTGTGCTCCTTCAGGAAAAAAACAAGACCATGTGCTGTGCTATCCTTTGCCATTACTAGTGTTCTGTTTTTGTATTGATTGTTCTCTTTACTATAAAGTCCAATTAGTAATTGCTTTTtgtattttaaaaatgtaatttctACTTTA
>XM_021569234.2
GAGCTATATGGAGCCctacacattgttacaacatGTGTGAGGCGCACGGTGATGTGGTAGAGCTTGATTTGGCCTGTTAGCTGGACCATATTGCATCAAGCTTAAATCGGCCTTAGTTACACGCGTATGTTAACGCCGTATTAACGTTAGCGGACTTTTCTTAGCGGATTTACAATCATCGCGAATCGAATTAGGGGCGTTTCAGGCCCGacgtgaacataattgtacactcgcaaactcCATTAGAAACGAGGGCTAAGGGGCTTAagttgcaaacttcccttgcttggctaatcatttggactgACGACAAATATGGCTGCGGcgattcccccaagggcatatGACGAGGGTGTGTCTTTCAAGTGTTTGTACTGCAACCTATTCCCTAAGAATTTATGTCAGGAACTAAGAGGGGCAGCTAAAATGGGTCCTTCGTTCTTACGTCCTCAGATGCACTGACACAAAAAACGTGGGTTATGTGAACGATAAAGTAGTTgtgaaacagctagctagctatacaaTACCAAATTATTCTCCTTTTGTAATTGATAAAGTAGTATAACATCAGTCGGGAAACTCGGCACCGCAGGGACACCTTGAAGGGCACAACACGTCAGTAGACACCACACCGAAGAAATGTCCTCAGTCAAGGAGGAAGGTAAGGACCGTGTCATCTTTGTGACTAAGGAGGAACATGAAGCACCGAGCAACGCTGAGCTGGTGGAGGAGGATCCTGATGACCCCTATGAAGAACGAGGTCTGATCCTGCCCAATGGGGAGATCAACTGGAACTGCCCCTGTCTGGGAGGGATGGCCAGCGGTCCCTGTGGAGCATCGTTTAAGGAGGCCTTCTCCTGTTTCCACTACAGCAAGGAGGAGGTGAAGGGCTCAGAGTGCCTGGAGCAATTCAGGGGCATGCAGGAGTGTATGCAGAGATACCCAGAACTCTACCCCCAGGAGGATGACAAGGAGACCCAGGGAGGGCCATCTGAAACGGATCCTTCCAAACAAGACTCTGCCCCTGAACCAACCCCTACACCTGCGGCCCCTGTCCAAGACTCTAGTCCTTCCACCGCCCCTGCTGACACCCCACCACCTTCAAACAGCTCAGCCTCAGGATAAGCATGATTCACGACAAGCCCTTTCTATGGATGTGTTAAGATTCTGTgggtgccttgcaaaagtattcagaccccttggacttcttcacattttgttgtgttgcgaagagattaaaattgatttaattatttttttgtcaacaaaTCTACAAAAAAGACTTGAAAGTTGAATagaaattaaaaaaacaaaaatatagttgctgcataagtattcagctcca

Function

NR:

description
mitochondrial intermembrane space import and assembly protein 40-A-like

GO: NA

KEGG:

id description
K17782 MIA40, CHCHD4; mitochondrial intermembrane space import and assembly protein 40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569232.2 False 1482 mRNA 0.46 3 61730137 61734631
XM_021569234.2 True 1345 mRNA 0.47 4 61730137 61734872

Neighbor

gene id symbol gene type direction distance location
LOC100135961 LOC100135961 coding upstream 2220 61723802 ~ 61727917 (+)
LOC110494287 NA coding upstream 17157 61708686 ~ 61714434 (+)
LOC110494284 LOC106565564 coding upstream 45220 61676965 ~ 61684917 (+)
trnaf-gaa-81 NA coding upstream 141674 61588391 ~ 61588463 (+)
LOC110495182 LOC106565603 coding upstream 148268 61579639 ~ 61581869 (+)
LOC110495184 NA coding downstream 10080 61744952 ~ 61746038 (+)
si:dkey-197j19.5 efcab12 coding downstream 13839 61748711 ~ 61764097 (+)
LOC110494290 LOC106565558 coding downstream 60172 61795044 ~ 61804070 (+)
LOC110494291 NA coding downstream 75060 61809932 ~ 61813656 (+)
LOC110494292 LOC106565557 coding downstream 81618 61816490 ~ 61851025 (+)
G1472611 NA non-coding upstream 26124 61703608 ~ 61704013 (+)
G1472519 NA non-coding upstream 131592 61598318 ~ 61598545 (+)
G1472515 NA non-coding upstream 135853 61594075 ~ 61594284 (+)
G1472512 NA non-coding upstream 142001 61587867 ~ 61588136 (+)
G1472696 LOC103358720 non-coding downstream 125475 61860347 ~ 61865508 (+)
G1472625 LOC106565554 non-coding downstream 132773 61867645 ~ 61898508 (+)
G1472701 NA non-coding downstream 143709 61878581 ~ 61940477 (+)
G1472762 NA non-coding downstream 293418 62028290 ~ 62112728 (+)
LOC110494283 LOC106565563 other upstream 173099 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 731074 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1626130 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3222252 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4115837 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 963631 62698503 ~ 62698815 (+)
G1473177 NA other downstream 975467 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1482076 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1923572 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1949218 63684043 ~ 63691033 (+)

Expression


Co-expression Network