LOC110494292 (LOC106565557)


Basic Information

Item Value
gene id LOC110494292
gene name LOC106565557
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61816490 ~ 61851025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569238.2
AGATTAGTCATTACAGCTAGTGAAAAACTCAATTCAGCTAGTGCTCACATAACCCCGTGCCTGTTGTAGCGCATCTGCGCTGTCTGAAATCCTCTCCGTCCTGTTGGAGAGGACTTGCATGCCTCTCCAAACGTGACTCCATTCATTGCCATCAAGCACCGCGGAGAGACGCACACAACGAAACAACACTGGCAACGAGCAGCTCTCCTTCAAACCTGGACTATGAGGGGTTCCTGCCGACCACGAGCCACGCAAGACTGGACAGtatgTATGACCAACTGTCCCACCCTCATTGTGACGGTGGGCCTCCCAGCGAGAGGGAAGACCTACATCTCCAAGAAGCTGACCCGCTATCTCAACTGGATTGGTGTGCCAACCAAAGAGTTCAACGTGGGTCAGTACAGGAGGGAGTGTGTGAAGATCTACAAGTCTTTTGAGTTTTTCCGTCCAGACAATGAAGAGGGGCTGAAGATCAGGAGGCAGTGTGCACTGACGGCGCTGAATGATGTGTGCCAGTACCTGACTGTGGAGGGAGGCCAGGTGGCGGTGTTTGATGCCACTAACACCaccagggagaggagatggaccaTCACCAGGTTTGCAGAGCAGAATGGCTTTAAGGTGTTCTTTGTGGAGTCTGTGTGTGAAGACCCTGATGTCATTGCAGAGAACATAGCGCAAGTGAAGCTGGGTAGTCCTGACTACATAGACTGTAATACAGAGGAGGTCATCGAGGACTTCATGAAGAGAATCAAGTGCTACGAGAACTCTTACCAGCCACTGGATGAGGTTCTAGACAGGGATCTGTCCTACATTAAGATCATGGACGTGGGCCGGAGATACCTGGTGAACAGGGTGCTGGACCACATCCAGAGCCGCATTGTCTACTACCTAATGAATATCCACATCACACCACGCTCCATCTACCTGTGTCGCCATGGAGAGAGTGACCTCAACGTCAAAGGACGCATCGGAGGAGACTCAGGCCTGTCTGGCAGGGGCAAGGAGTTTGCAAAGTGTCTGGGGAAGTTTATCCAGGAGCAAAACATTAAGAATCTGAAGGTGTGGACCAGTCAGATGAAGAGAACCATTCAGACAGCCGAGGCCGTGGCTGTCCCCTATGAGCAGTGGAAGGCTCTCAACGAGATCGATGCTGGTGTGTGTGAAGAGATGACGTATGAGGAGATCCAGGTTCATTTCCCTGTGGAGTTTTCACTGAGAGACCAGGACAAATACCGCTACCGCTACCCTAAAGGAGAGTCCTATGAGGACCTGGTGCAGCGGTTGgagccagtcatcatggagctggagAGGCAGGAGAACGTCCTGGTCATCTGTCACCAGGCTGTCATGCGCTGCCTGCTCGCTTACTTCCTGGATAAGAGTGCAGAGGAGCTGCCTTACCTGAAGTGCCCTTTGCACACTGTATTGAAGCTGACCCCTGTGGCGTATGGATGTAAAGTAGAGTCTGTCTGGTTGAATGTGGAAGCTGTGAACACCCATAGGGACAGGCCAGAGAATGTAGACATTTCACGGATGCCGGAAGAAGCCCTGTTCACAGTCCCCGCCCACCAGTGATGAGTGACGGCGCACAAAGTTTAGATTCAATCAGTTCTTCCTTCACCTGCGATAACTGACAACTGCATAGCAGTTTCATTGCTTTTATTCATTGAATGTCGTAGGTGTAACggcgttagagctgtcaaatcaggAAGCGACTCCCGGCGTGATACCTATTGCGGACATTTCCATTTTATGTGACGAGTCGCATTAGTAataatcccatgcagccttgttacAAGTTCAAACACGGGAATGTGTTGTAATATACACCTCGATTAGGCTGATATATGAATCCTCATTATTTAGGTTAATGATGTTCAATTTGagtgtcattatttctatatagcctagaCTTTCTCGTTATGAACTTCTAACGTGAGTGGGACGGGTGTGGCTTGGTGACAATAACCGCACGAGCAGCCGCTCAGCTCTAAAGCAGTTCCACTTCCAGCACCTTCTAAACACCAGCTATGCAGGTGTTGGCTACCACTGGTtaatgcttgatctgattgaatccagGCCCTAGACTCCAAAGTGCCAACGCTCACCATGGCTACTTCATCTACTCAATCAGAAATCAATGCAAATTGCTATTTTAAAAAATCCTTGCAGCGGGATTTGAAGAGTGCATCCGAATCTTTCATTTGACATATTTCAATCTACAGTGGCAATCAGCAGAGGAAACAATAACGAAGAGTGATCCCCggtttcggtaaaaagctgagggatgggctggagaaatgtaactattCTCAAATTGGGATGACCATTCATGATATCAACATtgagttttaaccatgttttgaggcaaaaagtgtttgtttacatttactttggttacaaacattggagtaaaagcttagattttgggttctgatggaggcatttatacattttattcttcaagaatcattcatttataagtccaaaaatgtaatTAGCGACTGCTGATTTCCCCTTTTAAGgttcttaaaaaaaaacatcatttTTTCATCTTGGTTCTTCACCTGATCTGTGTCTTTCCTTCTGTGCAAAATTGCCTGTGTAAAATTGCCTGTGTTTAGACAGGCATCCCAATCCTGATCTTTTTTCCacaaattggtattttgaccaatcatatcagatctttctcagagctgatctgattgatcATAAAcaattttgtgaaaaaaaaatatcagaattaggctgcctgtctaaacgtcTAGAGAACTGGAATCCAGTTCAATGGTGATTCACCCCACTATCGGGGTATGTGTGCCTGTGAgtgtgttttgtatgtgtgtgagtgagtgtattaTGAACAATGTAAGGACAATCTGATGTGAAACCTTTTTTATATACATGACATATGGCTTTTAATCAAATTGTAAAGTGTCTTGACACTGGCTGCGTTTACATAGGCAGCCCAGTTCTGAACTTTGTCCACTAATTGGCcttttaaccaatcagatcaACTCTTTTGTCAATCGTTTGGTAAAGATCAGAATTGGCAGCCTGTGGAAGCTAAATGTAATACTCCTTGTTCTTAGTATTTTAGTTTTTGTCCAACCATTTGTCTGTTAACAAGTGTTTTTTTAAAGCTGTTTTTTAGTTTGTGAATTTCCTATTAAACCAACTCTTGCGTTTA
>XM_021569237.2
TAGTGACATTACGGTAATGATATACGTTTTATGTTCCTCAGCCAAAATGATATCATTCCCTCGCAGCTCTGTTGCTCAAACTAGCTGTCATTAAGTAGAATATCGCTTCTGTCGGGATGACTTCCAACGAATACCATATAATGGCAACATCACCCCGTGAGCTTACTCAGAACCCGCTGAAGAAAATATGGATGCCATGGAAAAACGGGCTCTTTGTACACATTTTACAAAGAAGGGtatgTATGACCAACTGTCCCACCCTCATTGTGACGGTGGGCCTCCCAGCGAGAGGGAAGACCTACATCTCCAAGAAGCTGACCCGCTATCTCAACTGGATTGGTGTGCCAACCAAAGAGTTCAACGTGGGTCAGTACAGGAGGGAGTGTGTGAAGATCTACAAGTCTTTTGAGTTTTTCCGTCCAGACAATGAAGAGGGGCTGAAGATCAGGAGGCAGTGTGCACTGACGGCGCTGAATGATGTGTGCCAGTACCTGACTGTGGAGGGAGGCCAGGTGGCGGTGTTTGATGCCACTAACACCaccagggagaggagatggaccaTCACCAGGTTTGCAGAGCAGAATGGCTTTAAGGTGTTCTTTGTGGAGTCTGTGTGTGAAGACCCTGATGTCATTGCAGAGAACATAGCGCAAGTGAAGCTGGGTAGTCCTGACTACATAGACTGTAATACAGAGGAGGTCATCGAGGACTTCATGAAGAGAATCAAGTGCTACGAGAACTCTTACCAGCCACTGGATGAGGTTCTAGACAGGGATCTGTCCTACATTAAGATCATGGACGTGGGCCGGAGATACCTGGTGAACAGGGTGCTGGACCACATCCAGAGCCGCATTGTCTACTACCTAATGAATATCCACATCACACCACGCTCCATCTACCTGTGTCGCCATGGAGAGAGTGACCTCAACGTCAAAGGACGCATCGGAGGAGACTCAGGCCTGTCTGGCAGGGGCAAGGAGTTTGCAAAGTGTCTGGGGAAGTTTATCCAGGAGCAAAACATTAAGAATCTGAAGGTGTGGACCAGTCAGATGAAGAGAACCATTCAGACAGCCGAGGCCGTGGCTGTCCCCTATGAGCAGTGGAAGGCTCTCAACGAGATCGATGCTGGTGTGTGTGAAGAGATGACGTATGAGGAGATCCAGGTTCATTTCCCTGTGGAGTTTTCACTGAGAGACCAGGACAAATACCGCTACCGCTACCCTAAAGGAGAGTCCTATGAGGACCTGGTGCAGCGGTTGgagccagtcatcatggagctggagAGGCAGGAGAACGTCCTGGTCATCTGTCACCAGGCTGTCATGCGCTGCCTGCTCGCTTACTTCCTGGATAAGAGTGCAGAGGAGCTGCCTTACCTGAAGTGCCCTTTGCACACTGTATTGAAGCTGACCCCTGTGGCGTATGGATGTAAAGTAGAGTCTGTCTGGTTGAATGTGGAAGCTGTGAACACCCATAGGGACAGGCCAGAGAATGTAGACATTTCACGGATGCCGGAAGAAGCCCTGTTCACAGTCCCCGCCCACCAGTGATGAGTGACGGCGCACAAAGTTTAGATTCAATCAGTTCTTCCTTCACCTGCGATAACTGACAACTGCATAGCAGTTTCATTGCTTTTATTCATTGAATGTCGTAGGTGTAACggcgttagagctgtcaaatcaggAAGCGACTCCCGGCGTGATACCTATTGCGGACATTTCCATTTTATGTGACGAGTCGCATTAGTAataatcccatgcagccttgttacAAGTTCAAACACGGGAATGTGTTGTAATATACACCTCGATTAGGCTGATATATGAATCCTCATTATTTAGGTTAATGATGTTCAATTTGagtgtcattatttctatatagcctagaCTTTCTCGTTATGAACTTCTAACGTGAGTGGGACGGGTGTGGCTTGGTGACAATAACCGCACGAGCAGCCGCTCAGCTCTAAAGCAGTTCCACTTCCAGCACCTTCTAAACACCAGCTATGCAGGTGTTGGCTACCACTGGTtaatgcttgatctgattgaatccagGCCCTAGACTCCAAAGTGCCAACGCTCACCATGGCTACTTCATCTACTCAATCAGAAATCAATGCAAATTGCTATTTTAAAAAATCCTTGCAGCGGGATTTGAAGAGTGCATCCGAATCTTTCATTTGACATATTTCAATCTACAGTGGCAATCAGCAGAGGAAACAATAACGAAGAGTGATCCCCggtttcggtaaaaagctgagggatgggctggagaaatgtaactattCTCAAATTGGGATGACCATTCATGATATCAACATtgagttttaaccatgttttgaggcaaaaagtgtttgtttacatttactttggttacaaacattggagtaaaagcttagattttgggttctgatggaggcatttatacattttattcttcaagaatcattcatttataagtccaaaaatgtaatTAGCGACTGCTGATTTCCCCTTTTAAGgttcttaaaaaaaaacatcatttTTTCATCTTGGTTCTTCACCTGATCTGTGTCTTTCCTTCTGTGCAAAATTGCCTGTGTAAAATTGCCTGTGTTTAGACAGGCATCCCAATCCTGATCTTTTTTCCacaaattggtattttgaccaatcatatcagatctttctcagagctgatctgattgatcATAAAcaattttgtgaaaaaaaaatatcagaattaggctgcctgtctaaacgtcTAGAGAACTGGAATCCAGTTCAATGGTGATTCACCCCACTATCGGGGTATGTGTGCCTGTGAgtgtgttttgtatgtgtgtgagtgagtgtattaTGAACAATGTAAGGACAATCTGATGTGAAACCTTTTTTATATACATGACATATGGCTTTTAATCAAATTGTAAAGTGTCTTGACACTGGCTGCGTTTACATAGGCAGCCCAGTTCTGAACTTTGTCCACTAATTGGCcttttaaccaatcagatcaACTCTTTTGTCAATCGTTTGGTAAAGATCAGAATTGGCAGCCTGTGGAAGCTAAATGTAATACTCCTTGTTCTTAGTATTTTAGTTTTTGTCCAACCATTTGTCTGTTAACAAGTGTTTTTTTAAAGCTGTTTTTTAGTTTGTGAATTTCCTATTAAACCAACTCTTGCGTTTA
>XM_036950377.1
AAGACGACACCCTACTTGGGGCAGTGTCCCTGTCActaccctggggcattgggatctcCTTTGATCAGAGGGAAGAGTGCTCCCTAAAGGCCTTCCAACACCACTTTCAGTAGCATCTGAtctcccatccaaggactgaCCAGGCGTAGCTTCAAAGtatgTATGACCAACTGTCCCACCCTCATTGTGACGGTGGGCCTCCCAGCGAGAGGGAAGACCTACATCTCCAAGAAGCTGACCCGCTATCTCAACTGGATTGGTGTGCCAACCAAAGAGTTCAACGTGGGTCAGTACAGGAGGGAGTGTGTGAAGATCTACAAGTCTTTTGAGTTTTTCCGTCCAGACAATGAAGAGGGGCTGAAGATCAGGAGGCAGTGTGCACTGACGGCGCTGAATGATGTGTGCCAGTACCTGACTGTGGAGGGAGGCCAGGTGGCGGTGTTTGATGCCACTAACACCaccagggagaggagatggaccaTCACCAGGTTTGCAGAGCAGAATGGCTTTAAGGTGTTCTTTGTGGAGTCTGTGTGTGAAGACCCTGATGTCATTGCAGAGAACATAGCGCAAGTGAAGCTGGGTAGTCCTGACTACATAGACTGTAATACAGAGGAGGTCATCGAGGACTTCATGAAGAGAATCAAGTGCTACGAGAACTCTTACCAGCCACTGGATGAGGTTCTAGACAGGGATCTGTCCTACATTAAGATCATGGACGTGGGCCGGAGATACCTGGTGAACAGGGTGCTGGACCACATCCAGAGCCGCATTGTCTACTACCTAATGAATATCCACATCACACCACGCTCCATCTACCTGTGTCGCCATGGAGAGAGTGACCTCAACGTCAAAGGACGCATCGGAGGAGACTCAGGCCTGTCTGGCAGGGGCAAGGAGTTTGCAAAGTGTCTGGGGAAGTTTATCCAGGAGCAAAACATTAAGAATCTGAAGGTGTGGACCAGTCAGATGAAGAGAACCATTCAGACAGCCGAGGCCGTGGCTGTCCCCTATGAGCAGTGGAAGGCTCTCAACGAGATCGATGCTGGTGTGTGTGAAGAGATGACGTATGAGGAGATCCAGGTTCATTTCCCTGTGGAGTTTTCACTGAGAGACCAGGACAAATACCGCTACCGCTACCCTAAAGGAGAGTCCTATGAGGACCTGGTGCAGCGGTTGgagccagtcatcatggagctggagAGGCAGGAGAACGTCCTGGTCATCTGTCACCAGGCTGTCATGCGCTGCCTGCTCGCTTACTTCCTGGATAAGAGTGCAGAGGAGCTGCCTTACCTGAAGTGCCCTTTGCACACTGTATTGAAGCTGACCCCTGTGGCGTATGGATGTAAAGTAGAGTCTGTCTGGTTGAATGTGGAAGCTGTGAACACCCATAGGGACAGGCCAGAGAATGTAGACATTTCACGGATGCCGGAAGAAGCCCTGTTCACAGTCCCCGCCCACCAGTGATGAGTGACGGCGCACAAAGTTTAGATTCAATCAGTTCTTCCTTCACCTGCGATAACTGACAACTGCATAGCAGTTTCATTGCTTTTATTCATTGAATGTCGTAGGTGTAACggcgttagagctgtcaaatcaggAAGCGACTCCCGGCGTGATACCTATTGCGGACATTTCCATTTTATGTGACGAGTCGCATTAGTAataatcccatgcagccttgttacAAGTTCAAACACGGGAATGTGTTGTAATATACACCTCGATTAGGCTGATATATGAATCCTCATTATTTAGGTTAATGATGTTCAATTTGagtgtcattatttctatatagcctagaCTTTCTCGTTATGAACTTCTAACGTGAGTGGGACGGGTGTGGCTTGGTGACAATAACCGCACGAGCAGCCGCTCAGCTCTAAAGCAGTTCCACTTCCAGCACCTTCTAAACACCAGCTATGCAGGTGTTGGCTACCACTGGTtaatgcttgatctgattgaatccagGCCCTAGACTCCAAAGTGCCAACGCTCACCATGGCTACTTCATCTACTCAATCAGAAATCAATGCAAATTGCTATTTTAAAAAATCCTTGCAGCGGGATTTGAAGAGTGCATCCGAATCTTTCATTTGACATATTTCAATCTACAGTGGCAATCAGCAGAGGAAACAATAACGAAGAGTGATCCCCggtttcggtaaaaagctgagggatgggctggagaaatgtaactattCTCAAATTGGGATGACCATTCATGATATCAACATtgagttttaaccatgttttgaggcaaaaagtgtttgtttacatttactttggttacaaacattggagtaaaagcttagattttgggttctgatggaggcatttatacattttattcttcaagaatcattcatttataagtccaaaaatgtaatTAGCGACTGCTGATTTCCCCTTTTAAGgttcttaaaaaaaaacatcatttTTTCATCTTGGTTCTTCACCTGATCTGTGTCTTTCCTTCTGTGCAAAATTGCCTGTGTAAAATTGCCTGTGTTTAGACAGGCATCCCAATCCTGATCTTTTTTCCacaaattggtattttgaccaatcatatcagatctttctcagagctgatctgattgatcATAAAcaattttgtgaaaaaaaaatatcagaattaggctgcctgtctaaacgtcTAGAGAACTGGAATCCAGTTCAATGGTGATTCACCCCACTATCGGGGTATGTGTGCCTGTGAgtgtgttttgtatgtgtgtgagtgagtgtattaTGAACAATGTAAGGACAATCTGATGTGAAACCTTTTTTATATACATGACATATGGCTTTTAATCAAATTGTAAAGTGTCTTGACACTGGCTGCGTTTACATAGGCAGCCCAGTTCTGAACTTTGTCCACTAATTGGCcttttaaccaatcagatcaACTCTTTTGTCAATCGTTTGGTAAAGATCAGAATTGGCAGCCTGTGGAAGCTAAATGTAATACTCCTTGTTCTTAGTATTTTAGTTTTTGTCCAACCATTTGTCTGTTAACAAGTGTTTTTTTAAAGCTGTTTTTTAGTTTGTGAATTTCCTATTAAACCAACTCTTGCGTTTA

Function

NR:

description
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4-like isoform X1

GO: NA

KEGG:

id description
K19030 PFKFB4; 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569238.2 False 3193 mRNA 0.45 14 61816490 61851025
XM_021569237.2 False 3165 mRNA 0.44 14 61838804 61851025
XM_036950377.1 True 3085 mRNA 0.45 14 61842952 61851025

Neighbor

gene id symbol gene type direction distance location
LOC110494291 NA coding upstream 2834 61809932 ~ 61813656 (+)
LOC110494290 LOC106565558 coding upstream 12420 61795044 ~ 61804070 (+)
si:dkey-197j19.5 efcab12 coding upstream 52393 61748711 ~ 61764097 (+)
LOC110495184 NA coding upstream 70452 61744952 ~ 61746038 (+)
LOC110494288 LOC106565560 coding upstream 81618 61730137 ~ 61734872 (+)
si:ch211-157b11.8 LOC106565551 coding downstream 36567 61887592 ~ 61894193 (+)
LOC110494299 LOC106565550 coding downstream 70655 61921680 ~ 61933847 (+)
LOC110494300 ruvb1 coding downstream 211574 62062599 ~ 62071924 (+)
ghrl ghrl coding downstream 358997 62210022 ~ 62254810 (+)
LOC110494308 LOC106565540 coding downstream 431830 62282838 ~ 62286838 (+)
G1472595 NA non-coding upstream 60933 61692929 ~ 61755557 (+)
LOC110494287 NA non-coding upstream 102056 61708686 ~ 61714434 (+)
G1472611 NA non-coding upstream 112477 61703608 ~ 61704013 (+)
G1472519 NA non-coding upstream 217945 61598318 ~ 61598545 (+)
G1472696 LOC103358720 non-coding downstream 9322 61860347 ~ 61865508 (+)
G1472625 LOC106565554 non-coding downstream 16620 61867645 ~ 61898508 (+)
G1472701 NA non-coding downstream 27556 61878581 ~ 61940477 (+)
G1472762 NA non-coding downstream 177265 62028290 ~ 62112728 (+)
G1472820 NA non-coding downstream 254987 62106012 ~ 62107436 (+)
LOC110494283 LOC106565563 other upstream 259452 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 817427 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1712483 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3308605 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4202190 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 847478 62698503 ~ 62698815 (+)
G1473177 NA other downstream 859314 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1365923 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1807419 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1833065 63684043 ~ 63691033 (+)

Expression


Co-expression Network