LOC110494299 (LOC106565550)


Basic Information

Item Value
gene id LOC110494299
gene name LOC106565550
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61921680 ~ 61933847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569244.2
ATTCACTGGCGCCAGTGCTGACAGTTCCTACAGCTGCATGTCGCTAAAGGCCTATCCGTCTCCATCGGAGTTTACGCAGCAAATAACCCTACGCCAAAACCAAGGAAAAATAGACCAAACATATGCCGTATAAATTGAGTCAATACAAGAAAGGAAAATATACTTGCCAACTGGAGGAGAATTCTACCAAAGGGGCTTGAAATCGGAATAACCAAGCCTGAGACAGACAAGGTGTCCAGTGTCAAACACTACCCGATGCCTGTTGAAGAAGGAGAGGCAAGAGGATCTCATCGGACTACTAGTGAAGACCGAGTTATAGGAGATTGACGAGCGAAAGTTCTCTACACATTTATGTTCTGTTTTCCACAATAGGAGGACATTTTATCAGGAGAGGGAGGCAAAAAAAAATTTTAAGACAAAGCGGAGAGAGTAAGGTTCAGGAACACGTTGTCCTCTCTCTAGAGAGGCCCCTCTTCTCTTTTCACCCTGTTTGCCCAACACGGAGAGATCCACACAGACATGGATATAGCGGCTGATCCACCTCGGTGGATGCACCACCACGCCGTGCTGAACGGCCAACACCCGGATTCTCACCACCCCGCCCTTTCGCATAACTACATGGAGCCCACCGCGCAGCTTCTGCCCCCGGACGAGGTGGATGTTTTCTTCAACCATCTTGACTCGCAGGGAAACCCGTACTACCACAACTCCGCTCATGCACGGGCCAGAGTGTCCTACAGTCAAGCTCACGcTCGCTTCGCTGGGGGTCAGGTCTGCCGGCCACATCTCCTGCATAGCCCGGGGATTTCATGGCTAGAGCCCGGCAAAGCAGCCCTCTCAGCGGCCCACCATCACAACGCATGGGCGGTCAGCCACTTCAGCAAGACCGGGCTACACGCCTCAGGCTCCGGGGCTCATGGTGGCCTATACCCCTGCAGCAGCAACGCCAGCACGGCCTCGGCATCCTCGTTAACACCCGCGTCCCATTCGAGTCCACATCTCTACAGTTTCCCCCCTACCCCGCCGAAAGATGTGTCCCCAGACCTCGGGGCCGCCTCACCCTCATCCTCTACCCCGAGAATGGACGAGAAAGATTCTATCAAGTATCAAATGTCAATTTCTGAAGGCATGAAAATGGAGGGTTCCAGTCCTCTCCGGAGCAGCCTGGCCTCAATGAGCGCACAGACCCCATCCACCCACCACCCCATACCGACCTACCCCACATACTCTCTCCCGGCAGCGCATGACTACGGGGGCAGTCTCTTCCACCCCGGCAGCCTGCTCGGAGGATCATCCTCCAGCTTCACCCCGAAATGTAAAAGCAAAACTCGGTCGTGCTCAGCATGCTGCTCAGAGGGGCGTGAGTGTGTCAACTGTGGAGCCACCTCTACCCCCCTGTGGCGACGGGATGGTACGGGCCACTACTTGTGCAACGCCTGTGGACTCTACCATAAGATGAACGGTCAGAACCGACCCCTCATCAAGCCCAAACGCAGACTGTCTGCGGCCAGACGAGCCGGCACCTGTTGTGCTAACTGtcagaccaccaccaccacactgtgGAGGCGCAACGGCAATGGAGACCCCGTGTGCAATGCCTGCGGCCTTTACTACAAGCTGCACAACGTGAACCGACCTCTGACCATGAAGAAGGAAGGGATCCAGACACGCAACCGCAAGATGTCCAACAAGTCCAAGAAGGGCAGGCGGGGCAACGACGGTTACGAGGAGCTCTCTAAGTGCATGCACGAGAAGTCCTCTCCTTTCAGTGCTTCCTCCCTGGCTGGACACATGACCCACATGGGCCACCTGCCCCCCTTTAGCCATGCCGGACACATGCTGCCCACCCCCACACCCATACACCCCTCCTTTGGCCACCCCCACCACTCCAACATGGTTACCGCCATGGGCTGAGCTGGGGAGGATGGGGAGGCACAGGGGATGTGAAGATTGTTCCCTTTTCTAATGGGGGTTGAGGGTCGTATAGGCCTCTTGCTTGAGGACAATGTGTATAATGTTAAAGACATGCATTTGGTGTGTCTATGTTGATTGTCTTGCTGTATAGAGAGAATGTAAAGGGTACGGGGGAACCAGGCAGCATCCACTGATGGGTGGGGTGGGGTTGGGGCGGGGCTATTTTACTCTCTATTAGGTACCTTCTTAGACCAGAGATAGACTACACCTCACCTCCACCCATCCCCATGCATATACCGTCCCCTCCCACCTCACCCCCGTCCTGCTGCAGTGGTATGTGCCGAGCAAGTCTGAAGTAACTGTGAATATTGTAAATGTGTGAGATACGAGGGTGGTGAAGACAACTTTGGGGCGAAGACAGAGCAATTCCCTTCACACCATTTAATAAATATATGCTGGATTTCTGCTCATGGACTTCTACTATTTTTAATGgacattacaaaaaaaaaagaaacaagtaaaaaaaaagaagtttatAAAGCTTAATTTGAAACGGTATATTATTaatggtattattattattgttgttattattgttatccAGATAATTTATTTTCACTGCCTTTTGCCTTTTTCTTTCACCTGAAACATTATGGATATTGTTATCACCATTTCTATCATTATAAATCTATTTTTAGCTGAAGCGCTTTCTCTGAGCTGTTAAACATTTCCTCCTAATGAAAATAAAGGAATCAAGTTTAATTCTGCCAACTGCTCCCTCTTCACATGAACCCCTAGTGAATGAGAGGACTGTGTGTTTAAAACCTTCagcaaggagacagagagagatacacagagcaGAGAAATAGATTGAATATAACAGATACCCAGTATTTGCCATTTCTGCTGCCGCATTGGATACTTCATACAGAAAATCTGATGCTATTGTTGGAATAATAAGCTGATTTACACATTAACACGAGCAACATATCTGTTCTATCAAtcctatttctatgtttggaATAGTCTTTTTGAACTTTGTCCTGTTCTACATTACCTAGGCCTCTCCTGTTCCATCAGTGTTGCCATGGTGATGAGCAGTAGCCTGTACCTCTTGGTTTCTCTGTGATGTGTGTCTTTGTGCCACAGCACAGTTTTGATTTGCTGCCTCTCTACTTAGCAGATAGAAAACCACACACCTGCTCTTTATTACCTGTCCAAAACAATTATAACCTGACAATCTGGATGCCATTACGTACTGATGATAATAAAGAAAACTTGTAAACATGAA
>XM_021569245.2
ATTCACTGGCGCCAGTGCTGACAGTTCCTACAGCTGCATGTCGCTAAAGGCCTATCCGTCTCCATCGGAGTTTACGCAGCAAATAACCCTACGCCAAAACCAAGGAAAAATAGACCAAACATATGCCGTATAAATTGAGTCAATACAAGAAAGGAAAATATACTTGCCAACTGGAGGAGAATTCTACCAAAGGGGCTTGAAATCGGAATAACCAAGCCTGAGACAGACAAGGTGTCCAGTGTCAAACACTACCCGATGCCTGTTGAAGAAGGAGAGGCAAGAGGATCTCATCGGACTACTAGTGAAGACCGAGTTATAGGAGATTGACGAGCGAAAGTTCTCTACACATTTATGTTCTGTTTTCCACAATAGGAGGACATTTTATCAGGAGAGGGAGGCAAAAAAAAATTTTAAGACAAAGCGGAGAGAGTAAGGTTCAGGAACACGTTGTCCTCTCTCTAGAGAGGCCCCTCTTCTCTTTTCACCCTGTTTGCCCAACACGGAGAGATCCACACAGACATGGATATAGCGGCTGATCCACCTCGGTGGATGCACCACCACGCCGTGCTGAACGGCCAACACCCGGATTCTCACCACCCCGCCCTTTCGCATAACTACATGGAGCCCACCGCGCAGCTTCTGCCCCCGGACGAGGTGGATGTTTTCTTCAACCATCTTGACTCGCAGGGAAACCCGTACTACCACAACTCCGCTCATGCACGGGCCAGAGTGTCCTACAGTCAAGCTCACGcTCGCTTCGCTGGGGGTCAGGTCTGCCGGCCACATCTCCTGCATAGCCCGGGGATTTCATGGCTAGAGCCCGGCAAAGCAGCCCTCTCAGCGGCCCACCATCACAACGCATGGGCGGTCAGCCACTTCAGCAAGACCGGGCTACACGCCTCAGGCTCCGGGGCTCATGGTGGCCTATACCCCTGCAGCAGCAACGCCAGCACGGCCTCGGCATCCTCGTTAACACCCGCGTCCCATTCGAGTCCACATCTCTACAGTTTCCCCCCTACCCCGCCGAAAGATGTGTCCCCAGACCTCGGGGCCGCCTCACCCTCATCCTCTACCCCGAGAATGGACGAGAAAGATTCTATCAAGTATCAAATGTCAATTTCTGAAGGCATGAAAATGGAGGGTTCCAGTCCTCTCCGGAGCAGCCTGGCCTCAATGAGCGCACAGACCCCATCCACCCACCACCCCATACCGACCTACCCCACATACTCTCTCCCGGCAGCGCATGACTACGGGGGCAGTCTCTTCCACCCCGGCAGCCTGCTCGGAGGATCATCCTCCAGCTTCACCCCGAAATGTAAAAGCAAAACTCGGTCGTGCTCAGAGGGGCGTGAGTGTGTCAACTGTGGAGCCACCTCTACCCCCCTGTGGCGACGGGATGGTACGGGCCACTACTTGTGCAACGCCTGTGGACTCTACCATAAGATGAACGGTCAGAACCGACCCCTCATCAAGCCCAAACGCAGACTGTCTGCGGCCAGACGAGCCGGCACCTGTTGTGCTAACTGtcagaccaccaccaccacactgtgGAGGCGCAACGGCAATGGAGACCCCGTGTGCAATGCCTGCGGCCTTTACTACAAGCTGCACAACGTGAACCGACCTCTGACCATGAAGAAGGAAGGGATCCAGACACGCAACCGCAAGATGTCCAACAAGTCCAAGAAGGGCAGGCGGGGCAACGACGGTTACGAGGAGCTCTCTAAGTGCATGCACGAGAAGTCCTCTCCTTTCAGTGCTTCCTCCCTGGCTGGACACATGACCCACATGGGCCACCTGCCCCCCTTTAGCCATGCCGGACACATGCTGCCCACCCCCACACCCATACACCCCTCCTTTGGCCACCCCCACCACTCCAACATGGTTACCGCCATGGGCTGAGCTGGGGAGGATGGGGAGGCACAGGGGATGTGAAGATTGTTCCCTTTTCTAATGGGGGTTGAGGGTCGTATAGGCCTCTTGCTTGAGGACAATGTGTATAATGTTAAAGACATGCATTTGGTGTGTCTATGTTGATTGTCTTGCTGTATAGAGAGAATGTAAAGGGTACGGGGGAACCAGGCAGCATCCACTGATGGGTGGGGTGGGGTTGGGGCGGGGCTATTTTACTCTCTATTAGGTACCTTCTTAGACCAGAGATAGACTACACCTCACCTCCACCCATCCCCATGCATATACCGTCCCCTCCCACCTCACCCCCGTCCTGCTGCAGTGGTATGTGCCGAGCAAGTCTGAAGTAACTGTGAATATTGTAAATGTGTGAGATACGAGGGTGGTGAAGACAACTTTGGGGCGAAGACAGAGCAATTCCCTTCACACCATTTAATAAATATATGCTGGATTTCTGCTCATGGACTTCTACTATTTTTAATGgacattacaaaaaaaaaagaaacaagtaaaaaaaaagaagtttatAAAGCTTAATTTGAAACGGTATATTATTaatggtattattattattgttgttattattgttatccAGATAATTTATTTTCACTGCCTTTTGCCTTTTTCTTTCACCTGAAACATTATGGATATTGTTATCACCATTTCTATCATTATAAATCTATTTTTAGCTGAAGCGCTTTCTCTGAGCTGTTAAACATTTCCTCCTAATGAAAATAAAGGAATCAAGTTTAATTCTGCCAACTGCTCCCTCTTCACATGAACCCCTAGTGAATGAGAGGACTGTGTGTTTAAAACCTTCagcaaggagacagagagagatacacagagcaGAGAAATAGATTGAATATAACAGATACCCAGTATTTGCCATTTCTGCTGCCGCATTGGATACTTCATACAGAAAATCTGATGCTATTGTTGGAATAATAAGCTGATTTACACATTAACACGAGCAACATATCTGTTCTATCAAtcctatttctatgtttggaATAGTCTTTTTGAACTTTGTCCTGTTCTACATTACCTAGGCCTCTCCTGTTCCATCAGTGTTGCCATGGTGATGAGCAGTAGCCTGTACCTCTTGGTTTCTCTGTGATGTGTGTCTTTGTGCCACAGCACAGTTTTGATTTGCTGCCTCTCTACTTAGCAGATAGAAAACCACACACCTGCTCTTTATTACCTGTCCAAAACAATTATAACCTGACAATCTGGATGCCATTACGTACTGATGATAATAAAGAAAACTTGTAAACATGAA

Function

NR:

description
endothelial transcription factor GATA-2 isoform X2

GO: NA

KEGG:

id description
K17894 GATA2; GATA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569244.2 False 3205 mRNA 0.49 6 61921680 61933847
XM_021569245.2 True 3193 mRNA 0.49 6 61921680 61933847

Neighbor

gene id symbol gene type direction distance location
si:ch211-157b11.8 LOC106565551 coding upstream 27487 61887592 ~ 61894193 (+)
LOC110494292 LOC106565557 coding upstream 70655 61816490 ~ 61851025 (+)
LOC110494291 NA coding upstream 108024 61809932 ~ 61813656 (+)
LOC110494290 LOC106565558 coding upstream 117610 61795044 ~ 61804070 (+)
si:dkey-197j19.5 efcab12 coding upstream 157583 61748711 ~ 61764097 (+)
LOC110494300 ruvb1 coding downstream 128752 62062599 ~ 62071924 (+)
ghrl ghrl coding downstream 276175 62210022 ~ 62254810 (+)
LOC110494308 LOC106565540 coding downstream 349008 62282838 ~ 62286838 (+)
LOC110494317 LOC106565535 coding downstream 471566 62405413 ~ 62417692 (+)
LOC110493234 NA coding downstream 492697 62426544 ~ 62433065 (+)
G1472625 LOC106565554 non-coding upstream 23172 61867645 ~ 61898508 (+)
G1472696 LOC103358720 non-coding upstream 56172 61860347 ~ 61865508 (+)
G1472595 NA non-coding upstream 166123 61692929 ~ 61755557 (+)
G1472762 NA non-coding downstream 94443 62028290 ~ 62112728 (+)
G1472820 NA non-coding downstream 172165 62106012 ~ 62107436 (+)
G1472883 NA non-coding downstream 280476 62214323 ~ 62215572 (+)
G1472961 LOC106565537 non-coding downstream 423075 62356922 ~ 62359002 (+)
LOC110494283 LOC106565563 other upstream 364642 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 922617 60972478 ~ 60999063 (+)
G1470607 NA other upstream 1817673 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3413795 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4307380 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 764656 62698503 ~ 62698815 (+)
G1473177 NA other downstream 776492 62710339 ~ 62711136 (+)
G1474159 NA other downstream 1283101 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1724597 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1750243 63684043 ~ 63691033 (+)

Expression


Co-expression Network