ghrl (ghrl)



Basic Information


Item Value
gene id ghrl
gene name ghrl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62210022 ~ 62254810 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021567407.2
GAACCATCCGCGCGAGCATCCGAACCATTTATCGTTCATTAATCCTTGTGAGAAAGCAACATCTATATTCCAGACCACACGTATTCCGAGAAACAGAAAGGAAAGCTATTCAGAGACCAGAAAGTCGTATACCAGAAGTGTTCCGGGTCCCACGTCGTGCCTCTGGACCAGAACAAGAAGTGGTGTCTGTCGTATTTCACCTGCCTGAACAGAAGCTAAACATTTTCCACGTCAGTGTCATTTCCCTGACCTGTCTTCCTGATGGGACAAACACACCTGCCTCCTTGTCAAGCGCATGAAATGGACCAGAGGAGGTCATGCCAGGCCATTCTCTCTACAAAGCGCAAACAGCCATCCATCATGCCACTGAAGAGAAACACAGGTCTCATGATACTGATGCTGTGTACTCTGGCTCTGTGGGCCAAGTCAGTCAGTGCTGGCTCCAGCTTCCTCAGCCCCTCCCAGAAACCACAGGTAAGACAGGGTAAAGGGAAGCCCCCTCGAGTTGGTCGGCGAGACATTGAGAGCTTTGCTGAGCTGTTTGAGGGTCCCCTTCACCAGGAAGACAAACACAATACGATCAAGGCTCCTTTTGAGATGGGCATCACCATGAGTGAGGAGGAGTTCCAGGAGTATGGTGCCGTGCTGCAGAAGATCCTGCAGGACGTCCTGGGAGACACTGCCACTGCAGAATGATCACAACTTGGCATAGACACGGAATACAAAGAACCTCCATTCCCTGTTCTCCAACTTTCTCAACTTGTCTTATACCCGATGTACTGTGTGAACATCGTTTGAATTGTAAAAGATGAATAAAATAACA
>XM_021567408.2
AACCATCCGCGCGAGCATCCGAACCATTTATCGTTCATTAATCCTTGTGAGAAAGCAACATCTATATTCCAGACCACACGTATTCCGAGAAACAGAAAGGAAAGCTATTCAGAGACCAGAAAGTCGTATACCAGAAGTGTTCCGGGTCCCACGTCGTGCCTCTGGACCAGAACAAGAAGTGGTGTCTGTCGTATTTCACCTGCCTGAACAGAAGCTAAACATTTTCCACGTCAGTGTCATTTCCCTGACCTGTCTTCCTGATGGGACAAACACACCTGCCTCCTTGTCAAGCGCATGAAATGGACCAGAGGAGGTCATGCCAGGCCATTCTCTCTACAAAGCGCAAACAGCCATCCATCATGCCACTGAAGAGAAACACAGGTCTCATGATACTGATGCTGTGTACTCTGGCTCTGTGGGCCAAGTCAGTCAGTGCTGGCTCCAGCTTCCTCAGCCCCTCCCAGAAACCACAGGGTAAAGGGAAGCCCCCTCGAGTTGGTCGGCGAGACATTGAGAGCTTTGCTGAGCTGTTTGAGGGTCCCCTTCACCAGGAAGACAAACACAATACGATCAAGGCTCCTTTTGAGATGGGCATCACCATGAGTGAGGAGGAGTTCCAGGAGTATGGTGCCGTGCTGCAGAAGATCCTGCAGGACGTCCTGGGAGACACTGCCACTGCAGAATGATCACAACTTGGCATAGACACGGAATACAAAGAACCTCCATTCCCTGTTCTCCAACTTTCTCAACTTGTCTTATACCCGATGTACTGTGTGAACATCGTTTGAATTGTAAAAGATGAATAAAATAACA
>XM_021567406.2
TTCTCTGTTTGAAGAAGCTAAACATTTTCCACGTCAGTGTCATTTCCCTGACCTGTCTTCCTGATGGGACAAACACACCTGCCTCCTTGTCAAGCGCATGAAATGGACCAGAGGAGGTCATGCCAGGCCATTCTCTCTACAAAGCGCAAACAGCCATCCATCATGCCACTGAAGAGAAACACAGGTCTCATGATACTGATGCTGTGTACTCTGGCTCTGTGGGCCAAGTCAGTCAGTGCTGGCTCCAGCTTCCTCAGCCCCTCCCAGAAACCACAGGTAAGACAGGGTAAAGGGAAGCCCCCTCGAGTTGGTCGGCGAGACATTGAGAGCTTTGCTGAGCTGTTTGAGGGTCCCCTTCACCAGGAAGACAAACACAATACGATCAAGGCTCCTTTTGAGATGGGCATCACCATGAGTGAGGAGGAGTTCCAGGAGTATGGTGCCGTGCTGCAGAAGATCCTGCAGGACGTCCTGGGAGACACTGCCACTGCAGAATGATCACAACTTGGCATAGACACGGAATACAAAGAACCTCCATTCCCTGTTCTCCAACTTTCTCAACTTGTCTTATACCCGATGTACTGTGTGAACATCGTTTGAATTGTAAAAGATGAATAAAATAACA
>NM_001124588.2
ATATCAATGTCCAAGGTATATCTGTTCTCTCTACAAAGCGCAAACAGCCATCCATCATGCCACTGAAGAGAAACACAGGTCTCATGATACTGATGCTGTGTACTCTGGCTCTGTGGGCCAAGTCAGTCAGTGCTGGCTCCAGCTTCCTCAGCCCCTCCCAGAAACCACAGGTAAGACAGGGTAAAGGGAAGCCCCCTCGAGTTGGTCGGCGAGACATTGAGAGCTTTGCTGAGCTGTTTGAGGGTCCCCTTCACCAGGAAGACAAACACAATACGATCAAGGCTCCTTTTGAGATGGGCATCACCATGAGTGAGGAGGAGTTCCAGGAGTATGGTGCCGTGCTGCAGAAGATCCTGCAGGACGTCCTGGGAGACACTGCCACTGCAGAATGATCACAACTTGGCATAGACACGGAATACAAAGAACCTCCATTCCCTGTTCTCCAACTTTCTCAACTTGTCTTATACCCGATGTACTGTGTGAACATCGTTTGAATTGTAAAAGATGAATAAAATAACACTGCTTCCTT
>XM_021567409.2
AATGTCCAAGGTATATCTGTTCTCTCTACAAAGCGCAAACAGCCATCCATCATGCCACTGAAGAGAAACACAGGTCTCATGATACTGATGCTGTGTACTCTGGCTCTGTGGGCCAAGTCAGTCAGTGCTGGCTCCAGCTTCCTCAGCCCCTCCCAGAAACCACAGGGTAAAGGGAAGCCCCCTCGAGTTGGTCGGCGAGACATTGAGAGCTTTGCTGAGCTGTTTGAGGGTCCCCTTCACCAGGAAGACAAACACAATACGATCAAGGCTCCTTTTGAGATGGGCATCACCATGAGTGAGGAGGAGTTCCAGGAGTATGGTGCCGTGCTGCAGAAGATCCTGCAGGACGTCCTGGGAGACACTGCCACTGCAGAATGATCACAACTTGGCATAGACACGGAATACAAAGAACCTCCATTCCCTGTTCTCCAACTTTCTCAACTTGTCTTATACCCGATGTACTGTGTGAACATCGTTTGAATTGTAAAAGATGAATAAAATAACACTGCTTCCTTA

Function


symbol description
ghrl Predicted to enable growth hormone-releasing hormone activity. Acts upstream of or within several processes, including chordate embryonic development; regulation of response to food; and response to food. Predicted to be located in extracellular region. Is expressed in several structures, including diencephalon; digestive system; ghrelin secreting cell; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in diabetic neuropathy; esophagus adenocarcinoma; morbid obesity; obesity; and type 2 diabetes mellitus. Orthologous to human GHRL (ghrelin and obestatin prepropeptide).

NR:

description
ghrelin isoform X2

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0030252 growth hormone secretion biological_process
GO:0005576 extracellular region cellular_component
GO:0016608 growth hormone-releasing hormone activity molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021567407.2 False 823 mRNA 0.49 7 62210022 62254799
XM_021567408.2 False 813 mRNA 0.49 7 62210023 62254799
XM_021567406.2 False 625 mRNA 0.49 5 62244150 62254799
NM_001124588.2 False 529 mRNA 0.49 5 62251539 62254809
XM_021567409.2 True 516 mRNA 0.49 5 62251544 62254810
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110494300 ruvb1 coding upstream 138098 62062599 ~ 62071924 (+)
LOC110494299 LOC106565550 coding upstream 276175 61921680 ~ 61933847 (+)
si:ch211-157b11.8 LOC106565551 coding upstream 315829 61887592 ~ 61894193 (+)
LOC110494292 LOC106565557 coding upstream 358997 61816490 ~ 61851025 (+)
LOC110494291 NA coding upstream 396366 61809932 ~ 61813656 (+)
LOC110494308 LOC106565540 coding downstream 28045 62282838 ~ 62286838 (+)
LOC110494317 LOC106565535 coding downstream 150603 62405413 ~ 62417692 (+)
LOC110493234 NA coding downstream 171734 62426544 ~ 62433065 (+)
LOC110494314 LOC106565532 coding downstream 217121 62471931 ~ 62491150 (+)
LOC110494318 rheb coding downstream 237161 62491971 ~ 62496531 (+)
G1472762 NA non-coding upstream 97294 62028290 ~ 62112728 (+)
G1472820 NA non-coding upstream 102586 62106012 ~ 62107436 (+)
G1472701 NA non-coding upstream 269545 61878581 ~ 61940477 (+)
G1472625 LOC106565554 non-coding upstream 311514 61867645 ~ 61898508 (+)
G1472696 LOC103358720 non-coding upstream 344514 61860347 ~ 61865508 (+)
G1472961 LOC106565537 non-coding downstream 102112 62356922 ~ 62359002 (+)
G1472966 LOC106565537 non-coding downstream 113033 62367843 ~ 62370614 (+)
G1473067 NA non-coding downstream 296990 62551800 ~ 62552243 (+)
G1473082 NA non-coding downstream 310939 62565749 ~ 62566066 (+)
LOC110494283 LOC106565563 other upstream 652984 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1210959 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2106015 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3702137 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4595722 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 443693 62698503 ~ 62698815 (+)
G1473177 NA other downstream 455529 62710339 ~ 62711136 (+)
G1474159 NA other downstream 962138 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1403634 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1429280 63684043 ~ 63691033 (+)

Expression


ghrl(ghrl) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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ghrl(ghrl) Expression in each Bioproject

Bar chart with 18 bars.
ghrl(ghrl) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network