LOC110494310


Basic Information

Item Value
gene id LOC110494310
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62327517 ~ 62329214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469251.2
TCGCCcagtgagcaatgagctgagcAAGTGGCGATTGAATATGACGTTCCATTTGGTTCTATAAAGGCCCTCCCCTTTCTTCGTCACGTCCTCTTTCAATTTGGTGTCTTCGCTGTAGAGACACATCTCCACAAGATGAGAGCAAAGTGGAGGAAGAAGCGTATGCGCAGGCTGAAGCGTAAAAGGCGAAAGATGAGGCAGAGGTCCAAGTAGACTGGCCCGTTCCCCTACTGCTGTGATTGTTTTTCTCCACCCACTCCAAGCCCTCTGAAGCCAGTGGTCCATGATTTGAAAAGAGCTGAACCATGGTGTCTGAAGCTGGTTTCGTTGGTGTGAAGGACAGATCCTGCCTACCCAGCCGTCTACTCTGCCAATGGCTCCTGGCCGTTGACTTCTGCTAGAATCTCTCCTGTCGTTCAACTCTGGCCTTTTACCACCTGCACAGCTGATTTGTTGTAAAGACCATAATAAATATTTGGTTTACTAACTA
>TU1685266
CTTTCTTCGTCACGTCCTCTTTCAATTTGGTGTCTTCGCTGTAGAGACACATCTCCACAAGATGAGAGCAAAGTGGAGGAAGAAGCGTATGCGCAGGCTGAAGCGTAAAAGGCGAAAGATGAGGCAGAGGTCCAAGTAGACTGGCCCGTTCCCCTACTGCTGTGATTGTTTTTCTCCACCCACTCCAAGCCCTCTGAAGCCAGTGGTCCATGATTTGAAAAGAGCTGAACCATGGTGTCTGAAGCTGGTTTCGTTGGTGTGAAGGACAGATCCTGCCTACCCAGCCGTCTACTCTGCCAATGGCTCCTGGCCGTTGACTTCTGCTAGAATCTCTCCTGTCGTTCAACTCTGGCCTTTTACCACCTGCACAGCTGATTTGTTGTAAAGACCATAATAAATATTTGGTTTACTAACTACATTAGTCTCTGTAAACATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469251.2 False 490 mRNA 0.49 4 62327539 62329214
TU1685266 True 438 lncRNA 0.48 4 62327517 62329140

Neighbor

gene id symbol gene type direction distance location
crbn crbn coding downstream 2962 62306845 ~ 62324577 (-)
vhl vhl coding downstream 50129 62274369 ~ 62277410 (-)
tatdn2 tatdn2 coding downstream 65753 62256122 ~ 62261786 (-)
ccdc174 NA coding downstream 76885 62246379 ~ 62250654 (-)
LOC110494304 LOC106565544 coding downstream 117287 62154414 ~ 62210252 (-)
LOC110494315 LOC106565538 coding upstream 4586 62333800 ~ 62351716 (-)
LOC110494311 LOC106565537 coding upstream 27664 62356878 ~ 62391906 (-)
LOC110494312 LOC106565533 coding upstream 108601 62437815 ~ 62458585 (-)
LOC110494313 LOC106565530 coding upstream 201865 62531079 ~ 62549639 (-)
LOC110493235 LOC106565607 coding upstream 224764 62553978 ~ 62560017 (-)
LOC110494301 LOC106565546 non-coding downstream 245296 62081247 ~ 62100547 (-)
G1473420 LOC106565550 non-coding downstream 399794 61923577 ~ 61927745 (-)
G1473389 NA non-coding downstream 476009 61817749 ~ 61851530 (-)
G1473385 NA non-coding downstream 514549 61811412 ~ 61812990 (-)
G1473378 NA non-coding downstream 523476 61795091 ~ 61804063 (-)
G1473734 NA non-coding upstream 175265 62504479 ~ 62505046 (-)
G1473767 NA non-coding upstream 245520 62574734 ~ 62574962 (-)
G1473803 NA non-coding upstream 300554 62629768 ~ 62630862 (-)
LOC110495185 LOC106565606 non-coding upstream 322926 62650688 ~ 62653187 (-)
G1473816 NA non-coding upstream 330100 62659314 ~ 62659639 (-)
G1471564 NA other downstream 1688204 60638180 ~ 60639335 (-)
G1471219 srgap3 other downstream 1950947 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 2220352 60104033 ~ 60110249 (-)
LOC110494253 LOC106565590 other downstream 2331213 59990975 ~ 59999740 (-)
G1473866 NA other upstream 400939 62730153 ~ 62730503 (-)
G1474395 NA other upstream 719425 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 804611 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 1077691 63403851 ~ 63409818 (-)
G1474741 LOC100136012 other upstream 1180902 63510116 ~ 63510543 (-)

Expression


Co-expression Network