LOC110494315 (LOC106565538)


Basic Information

Item Value
gene id LOC110494315
gene name LOC106565538
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62333800 ~ 62351716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569272.2
ctattgtggctagcttcacacagGTGTCGGGTCTTGGTGCCGACACATTAGGAGGTGTGTTGTCAAGAGAGTCGCTGTCAAGATGTCTGACAATGAAGAACAAGAACAGACTATCGCTGAGGACTTGGTTGTCACCAAGTACAAAATGGGAGGTGACATCGCCAACCAGGCCCTGCGCATGGTGATTGAGGAGGCCAAGTCAGGGGTGTCTGTGCTCAGTCTCTGTGAAAAGGGAGACGCTCACATCATGGCAGAAACTGGCAAGGTCTTCAGGAAGGAGAAAGACTTGAAGAAAGGAATTGCCTTCCCCACCAGCGTCTCAGTCAATAACTGTGTTTGCCACTTCTCTCCCCTGAAGAGTGACCCTGACTACACACTTAAAGATGGAGATCTGGTCAAAATTGATCTTGGAGTCCATGTTGATGGCTTCATCTCAAATGTGGCTCATAGCTTTGTTGTGGGAGCTACCAAGGAGGCGCCAGTGACCGGGAAGAAAGCTGATGTGATAAAGGCAGCTCATCTGTGTGCGGAGGCAGCCCTACGCCTTGTCAAGCCTGGCAACCAGAACTCAAAGGTGACAGAGGCTTGGAACAAGATCGCTCAGTCATTCAAATGCACAGCCATCGAGGGTATGTTATCTCATCAGCTGAAGCAACACGTCATCGATGGAGAGAAAACCATCATTCAGAACCCCACAGACCAGCAAAGGAAGGACCATGAGAAGGCAGAGTTTGAGGTGCACGAGGTCTACGCTGTTGATGTGCTGATCAGCACTGGTGAAGGGAAgGCCAGGGATGGAGGCCAGAGGACCACCATTTATAAGAGGGACCCCAGTAAGCAGTACGGGCTGAAGATGAAGACCTCCCGCATGTTCTTCAGCGATGTGGAGCGACGCTTCGACACCATGCCCTTCACTCTCAGggCATTTGAGGATGAGGCCAAAGCCCGCCTGGGCGTGGTGGAGTGTGCCAAACACGAGTTGCTACAGCCTTTCAGTGTGCTCAATGAGAAGGAGGGAGAGTTTGTGGCCCAGTTTAAGTTCACAGTGCTGCTAATGGCCAATGGCCCCCATAAAATCACCAGTGGACCCTTTGAGCCAGAGCTCTACAAGTCAGAGCACGAGGTGCAGGATGCAGAACTGAGGaCTCTGCTACAGAGCACAGCCAGTCGCAaaacacagaagaagaagaaaaagaagGCCTCCAAGACTGTGGAAACCACTACTGGACAGCCAACTGAGGAAAGCAACAAGGCTGCAGATTAGATGCCTACCTGTCTTCAGCcacactgacacgcacacacacacacacacgcacaccatatAACAAACTTAGAAAGTGAATCTAAATATTTCCCAACTGTTAGCTCGTTTTGACCCTCATGCCCTTTTCTAGTATTTGGCCCATTGAATACATCTGAGAGATTTGGAGTTGAGCCTGTTCGGAATGCTCTCAAATCTGttgaattctttttttttttgtagccaTTCAGTTGAATCTAGAGTCTGAATAAGAGTCACACCCTTGTAACACATATATATGGAGTTTATTTTACATTGATACTTAACTGGAGTATGAGATTGGGGAAACACATTTTTGGAATATGATGGATAAAAAACCTTTTCTAGCATTGTGTTTTTACACCTTATCGTTAGGTGATGTACCTGACTTCAGAAATGTTGCAATCTATAGGTGAAGTGTTATAAActttttaaattaaaaatgtcAATACAAAGTAGAAGTTTTGTTTTGATTAACTCAATTTTAACTGGATGATATTTGTTGGAAAATAATAGTTGGGTGCCAGTCACACTTTTTAAAATAATTCCAAATCCAAATGAGCCGACTTGGTACTTCTATTGTACATGAATGAGACTTGAGTTAGCAACTCAATCTTTTGGCCTCGAGTCATATTTTGTGTTGCAATTATTCAACATGACAGTATTGAAAGGTTAAAGCACAGAATTTCGAAGACAGAATTCTTGCACCAACACCTGAAGAGTTACTATTATGGGAACAAACCCTGCTATACTTACTGCTCCCCCCCCCGGTAGGGGATTTTTAAGGGAATTGTGTCGTGCTGTTCAGTTtaaaaatcaatttttattttcAACAATACCTCATTTTTATCAACCAAATTAAACATTTTAGTGTAGCTTTTAAACAAAGTGTCTTAATTCAGAACTGCTTGAAATCATATTTTATGCAAATCAGTTTTTCAACTAAGTGAGAGCATGTCATTAAATGGCAAAAAGCTAAATTGACAACA

Function

NR:

description
proliferation-associated protein 2G4-like

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569272.2 True 2268 mRNA 0.44 12 62333800 62351716

Neighbor

gene id symbol gene type direction distance location
LOC110494310 NA coding downstream 4586 62327517 ~ 62329214 (-)
crbn crbn coding downstream 9223 62306845 ~ 62324577 (-)
vhl vhl coding downstream 56390 62274369 ~ 62277410 (-)
tatdn2 tatdn2 coding downstream 72014 62256122 ~ 62261786 (-)
ccdc174 NA coding downstream 83146 62246379 ~ 62250654 (-)
LOC110494311 LOC106565537 coding upstream 5162 62356878 ~ 62391906 (-)
LOC110494312 LOC106565533 coding upstream 86099 62437815 ~ 62458585 (-)
LOC110494313 LOC106565530 coding upstream 179363 62531079 ~ 62549639 (-)
LOC110493235 LOC106565607 coding upstream 202262 62553978 ~ 62560017 (-)
LOC110495185 LOC106565606 coding upstream 298972 62650688 ~ 62653187 (-)
LOC110494301 LOC106565546 non-coding downstream 251557 62081247 ~ 62100547 (-)
G1473420 LOC106565550 non-coding downstream 406055 61923577 ~ 61927745 (-)
G1473389 NA non-coding downstream 482270 61817749 ~ 61851530 (-)
G1473385 NA non-coding downstream 520810 61811412 ~ 61812990 (-)
G1473734 NA non-coding upstream 152763 62504479 ~ 62505046 (-)
G1473767 NA non-coding upstream 223018 62574734 ~ 62574962 (-)
G1473803 NA non-coding upstream 278052 62629768 ~ 62630862 (-)
G1473816 NA non-coding upstream 307598 62659314 ~ 62659639 (-)
G1471564 NA other downstream 1694465 60638180 ~ 60639335 (-)
G1471219 srgap3 other downstream 1957208 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 2226613 60104033 ~ 60110249 (-)
LOC110494253 LOC106565590 other downstream 2337474 59990975 ~ 59999740 (-)
G1473866 NA other upstream 378437 62730153 ~ 62730503 (-)
G1474395 NA other upstream 696923 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 782109 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 1055189 63403851 ~ 63409818 (-)
G1474741 LOC100136012 other upstream 1158400 63510116 ~ 63510543 (-)

Expression


Co-expression Network