LOC110494314 (LOC106565532)


Basic Information

Item Value
gene id LOC110494314
gene name LOC106565532
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62471931 ~ 62491150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569271.2
ACACCGCACCGCGACAACTGCACGCCCATTGTGGCGCAGAGGGACAATCTGTTCACAAGAGCAGAGAGGCAGCGACACGACTCATTTGCATGAGGCAGCCTAGGAACGAGGACAAGCTGCGCTGCGGTTCTGGTCTGATGAGGCAGCAACAAGGACCAGAAAACATGTACATTTGAGCCACATAAAGGGCGAACAATCCGCGATATGGTTGTCGGAGCATGGAAGCTCCAGAAGACGTGTCGGTCCGGGAACAGCTTTTCCACGACCGAGTCAGAGAGACCATAATCTGTGTCCTGCTTTTCATATGTCTCTACATTGTCTCCTATCTGGTCATCACCCACTACAAGAGGAATGCTGAGTTTACCATAGATAACAGTGAAGATGCAACAGTCAACAAAATTGCgCTGTGGCTCTGTAcgttcactctctctgtctctgtgggcGCTGTTCTACTCCTACCACTCTCCATCTTGTCCAACGAGGTCCTGCTCTCCTTCCCACAGAGCTACTACATGCAGTGGCTTAACGGATCCCTTATAcacgGACTGTGGAATATAGTCTTCCTCTTCTCCAACCTATCCCTGGTCTTCCTCCTGCCCTTTGCCTACTTCTTCACTGAGTCTGAGGGCTTCGCTGGATCCAAAAAGGGTGTGATGGCCCGTCTGTATGAGACAGCAGTAGTCCTATTCCTCCTGACCCTGCTCGTGTTGGGGATGGTGTGGGTGGCATCAGCCATCCTTGATGACAACATGGCCAGACAAAGTCTTTATGATCTGTGGGAGTATTACCTGCCTTATCTGTACTCCTGCATATCCTTGTTCGGAGTCCTGCTGCTGTTGTTATGCACTCCTCTAGGACTATCACGCATGTTCAGCGTCACAGGAAGGCTACTGGTCAAACCCAGGTTGCTGGAGGACCTTGATGAGACAATGAGTTGTGCTGAGTTTGAAGAGGCCTCTCTATCCAGGAACCTCACTAGTGGGACCTCGTTATGGATTAATGTGAATGCAGAGGTTCTGAGGAACCGGTTCCTCAACATTCAGGCCCGGCGGATTGCTCTGGAGATACGGAAGAGAGCGTCACCATGGCAGCGCAACCTAGGATACCCATTGGCCATGCTGTTGCTGCTGGCTGTAACGGTGGTGTGTGTGCTCATTGTGTGTTACCATGTGGTGGAGTTGCTGTTTGACGATACAGCTATGCCTCGAGGGATGGAGGACCCTCTCCTGGGCGCTGCCTCATTCTCCATGTTTGGTTCGTTAGGGGCTGCAGTGCAGGTGATCCTCATCCTGTATCTCATGATCTCCTCAGTAGTGGGTTTCTACAGCTCCCCACTGTTCACTGGACTACGCCCCCGCGCACAGGACACCACACTGACAcagATTATTGGGAACTGTGTTTCTCTATTGGTTCTCAGCTCAGCTCTGCCTGTATTTTCTAGGACTTTGGGGATCACCCGGTTTGATCTGCTGGGAGACTTTGGTCGGTTTAACTGGCTGGGAAACTTCCACATCGTCTTCCTGTATAACATACTGTTTGCCGGGCTGACCTCTGCCTGTCTGATCAACACTCTCACATGGACTGTACAGAGGGAACTCATCAGAGCATTCGGGCTGCATAAACTGCCGTCGACTGTGTCCCGCTCCACCATCCCACTCAGGCTCCTATTGGCTAATGGACTCTCAAAGATTCAGTGACACTTGAACAAGCCAATGACCTTGGCTAACCAAAGTGAGTTTACCAAAAATCAGTGTCCCCAAATATTGAGCTGATGTAAACTCTcattgaaagagagagattgaccTGTTTGCTGATGGACGACTGGTGATCCTGTCACCACTGatatgagaggaggaggaaaccTGGTTAGATGAAACATATCGTCTGATCAGGAATGGACTTGGACCTCAGACATGATCATACATACAGAGAATAGGTACAGGTACTGCGCCAAAGGGGACCAATGCAATTTGTCTCCTTTTCTGTCAGGTCTATAACGGAGTAAgtgagaaataaaataaaaaagaagagGGAGACAATGGTGAAGAAAACAAAATGAATAGAAAGGGAGCAAGAATTTAGGTTTCTATGCGTAGAGTATGGAGATGGTCATCTTCGAGTCCCAAGGTCATTCCCAATATATGAACACTTCATAGACATCCAAAGTGACTTCTGCTGAAATGTCTGCCAATCTCAAAGCATCTGGATCCCTGACTCTTTGACTGGAAGGAACTCCACAAGAACTTCAGCGCTATGTACTTCTTTAGATCTGGCTTTTCCTCTCTAGCACTTATGACCTTATTTATTATTCAAATTATTTATTCTGCTGTGTCATCTTGTGAACATCATATCACTTCTTTCTGTTGTCCTTTAATGGAATGTTTTGGAAAGAAGAAGATGTCTGCATGGTGTCAAAGAATAACAGTAAATCGGTTAACAGTAATGAAAGTAAGTGACGGGTACTGTAACTCTACTTCTATGCATATGGACAATTCTACTATACTCATTTTTAGTATATCATTCTCATTTACACATTTGTATCACAACCTTGTGTAATAGGGACAGTTTATTGTTGGACTGAAAAGTTGGACAGCTGCCTTTTGTGACGAGAACAGCAACATACAATGCTTAGCACCATGGCGCTAAAGGAAATTTAAGGTAGAGACCGGAAACAATGGCCTGGAAGTTAAGACCAAGTTAAACTGTGatgtgtttacagtgtgtgtgtgtgtgtttatgtgcccGTGTTTGAGTAAAAGagtgcctgtgtttgtgtccgTCAGTGTACATTCATTTTTTTGTGCAATGTTGCATTAATGCATGGAGATTTTTCTCCAATATCTCAAGTtcctttcattttttttaaatcacgtttttgttttttaattatgAGTTTGTGTCAATAGATTTATTTTGACATCAAGTGAATGTTCATGTGTTTGTCTCACAGGGGTAAAAACATCTCCTGAATCGTCCAAATGTATTGTCATTAAAATGCCAGAACAGTAGGCTACTACATGTTAAATTGTCTATGTCTTGTAAAACTGTATGCTTTACTATGATGTAtgattgttagctagctatacaTTTGAACTCTGGTTAAAAGTATATGAAAATAGTTTTTGTAAGGACTCTTTACTGAAATAAATATTTTCAGTCTATTTCTTA

Function

NR:

description
limb region 1 homolog-like protein

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K25215 LMBR1L; protein LMBR1L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569271.2 True 3168 mRNA 0.45 16 62471931 62491150

Neighbor

gene id symbol gene type direction distance location
LOC110493234 NA coding upstream 38866 62426544 ~ 62433065 (+)
LOC110494317 LOC106565535 coding upstream 54239 62405413 ~ 62417692 (+)
LOC110494308 LOC106565540 coding upstream 185093 62282838 ~ 62286838 (+)
ghrl ghrl coding upstream 217121 62210022 ~ 62254810 (+)
LOC110494300 ruvb1 coding upstream 400007 62062599 ~ 62071924 (+)
LOC110494318 rheb coding downstream 821 62491971 ~ 62496531 (+)
LOC100136666 LOC100136666 coding downstream 15706 62506856 ~ 62528639 (+)
LOC110494319 LOC106565529 coding downstream 84835 62575985 ~ 62649525 (+)
LOC110493236 LOC106583228 coding downstream 256621 62747771 ~ 62760165 (+)
c1galt1b LOC106565526 coding downstream 272332 62763482 ~ 62774441 (+)
G1472966 LOC106565537 non-coding upstream 101317 62367843 ~ 62370614 (+)
G1472961 LOC106565537 non-coding upstream 112929 62356922 ~ 62359002 (+)
G1472883 NA non-coding upstream 256359 62214323 ~ 62215572 (+)
G1472820 NA non-coding upstream 364495 62106012 ~ 62107436 (+)
G1473067 NA non-coding downstream 60650 62551800 ~ 62552243 (+)
G1473082 NA non-coding downstream 74599 62565749 ~ 62566066 (+)
G1473083 NA non-coding downstream 74944 62566094 ~ 62566299 (+)
G1473085 NA non-coding downstream 77070 62568220 ~ 62568458 (+)
G1473120 NA non-coding downstream 119987 62611137 ~ 62611843 (+)
LOC110494283 LOC106565563 other upstream 914893 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1472868 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2367924 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3964046 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4857631 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 207353 62698503 ~ 62698815 (+)
G1473177 NA other downstream 219189 62710339 ~ 62711136 (+)
G1474159 NA other downstream 725798 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1167294 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1192940 63684043 ~ 63691033 (+)

Expression


Co-expression Network