LOC100136666 (LOC100136666)


Basic Information

Item Value
gene id LOC100136666
gene name LOC100136666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62506856 ~ 62528639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567414.2
AATGACAAGGAGTGTCAAGgaatggaatgttagctaaatagAATGGTACCCAGGCTACCCCTTTTACCCCGTATCACCCTTTCTTCACGGTCATGCGCAATCAGAAGGAAGTACTGTTAGAGGGGGCAATCGCAATCTCTCGCGTTTCCGGGGGAGTTCCAGTCATTCCAAGGCATCTTTCTCCTCGTTCATTTCACGCTATCAGTCCAGCTAAGTTTAATAAACAGATACCTTGGGAAAAAGTCCGGCGTGAGAAGAACATTTGGTTGTTTACTTCGCTACCATACAGGACCAAGCAAGGACGAGACAGTGAATGGAAAATGGAGTGTATGCCACTTTCTGTTGATGATGTGGATTGTAAAAAGGAGCCACTTCTAGAAGACTCGGATTATAATGTCTACACCCGGTTTATGAAGTCTCATCGGTGCTATGACTTGGTCCCTACCAGCTCCAAGTTGGTGGTGTTCGATACTTCACTGCAGGTAAAGAAGGCATTTTTCGCTCTGGTGTCCAATGGGGTGAGAGCAGCACCACTCTGGGACTGTAAGAAGCAGTGTTTTGTAGGCATGCTGACCATCACAGACTTCATCAACATCCTCCATCGCTACTACAAGTCTCCTTTGGTACAGATATATGAGCTGGAGGAGCACAAGATAGAGACGTGGAGAGAAGTCTACCTTCAAGACTCCTTCAAGCCCCTAGTCAGCATATCCCCCAATGAAAGtctgtatGACGCCGTGTCGTCTCTGCTGAAGAATAAGATCCACAGACTGCCTGTGATCGACCCTCTGACAGGGAACACCCTCTACATCCTCACTCACAAGAGGATCCTCAAGTTCCTCAAGCTCTTTATATCGGAGATGCCGAAACCTGCTTTCTTAGGCCAGACTCTAGAGGAACTGGGCATCGGAACATTCCATAAGATTGCAGTGGTGCGTTCTGACACACCTCTTTACACAGCACTGGGCATCTTCGTGGAGCAGAGAGTGTCTGCCCTGCCTGTCGTCGATGACAATGGACGAGTGGTGGACATTTACTCCAAATTTGATGTCATTAACCTAGCTGCAGAGAAGACGTACAACAACCTGGATGTGACTGTGACCAAAGCCCTGCAGCACCGCTCTCAGTATTTTGAGGGAGTGCTCACCTGCAACACACACGACACACTGGAGTCCATCATAAACAGACTGGTAGAGgcagagGTGCACAGGCTGGTGGTGGTTGATGAGCAGGAGGTGGTGAAGggtattgtctctctctcagacatcCTCCAGGCACTGGTGCTCACTAATGGAGACGGAGACAAGGGAACTGCTTGAAGGAGTGATGAAGGGAAGCCTCCTCCAAAAAGATGAGGATAAATAGAGAGGAGGATGATCctgaaggagaggaagaaataGGAGTGCCGTGGGAGAGGGAAAGATAGGAATCTGTCAACAACCCCTCCTGTACAAATGTACGTCTTGAACATgaggatctctctctctgcacaaaAATGTGAATCCCATTGACTTTCTCAATTCAGCAATATAGACACATAGGGACACTTTAAACCAAGCCAAAAACAAACAAGAAGCGGCCAATGGAGTGGAGCTGTATGTCCATTGTCCACTCTGAGCGGCCCAACACAACCTAGTGTCCCTCCTCTATTGGCGCAGGTGATGGACCGATACAGTGAAGGAATGATGTCTAGTTATGTGAAGGGGATCAATTATCCATTTCTCAGACAGATCCATTCCCTACCCGTTCTCTCCCATTTGGTCTGTAGACACTGGAGAGAGGAGTCAGAAACTTTCCACCCTGTCCCTTAACTGAGCAGCATTCCTTTTCCCCCATCATCCTTTTGGGCTGGAGTCTATAAAGCACAACAAGCCAATCATGGATCAAAAGATCATGCATGTCACAGTGGAACAATATATATTAGTACTGGAAGCTACCACAGCAACTCGGCTGTTTTGGTTACAGTAGGTGAAGTCTGGAATGTCCGAGTTGGCACTGCTGTAGCTGTAATTAATTTTATTTCTAATATCGATGCACAACCACTGACTTATGTAGTAAACGAGTTGTTTCTGATTTGCTATTTGGCATAGCGTACATTTCACAATTTTTTTCTTATTCTCTCTTCAGTTTGTAAAGTGTCATGTGAATTGGAGTGTTATGATTTTGCTCAGTGTGTCCttgtttgatttgacacacacattGTCAAACCCAGAAGACTGGAGACATTTTTATGGCAGTACAACGAGTCTGTTTTTAGGGTTTGTTTAGCGGTGTTCCTCAATCCTTCTAGCGCTAGATGAAATTATTTTTTGAAAGTTTTCAACAACATGCAGTGAGTGTGTGGATTGATCATGGACTCAGTCACTTGTGAACAATTGCCTGTCTTCTGATTGGATGTATCCGAGTGCTCCTGAGATATTCATCCTGATTGTGTTAGGGGTAATTCGGTGAAGCAGTTGACATTTTGGACAGTCCCTTTTTTGCCGTGACTTTATTCCATTACCTTATAGGATTCCATTTTAGTCTTTCATTACTACCTGTACTTTCCTTTTCACGTTCCCAGAGGGCAAACCATGTATGAAAGGGACTTTCTTGGGCCATTGAATCAGTACATTTCCAACTTTTCAAAATTGACTTTTGCTCACAGGTTTTAAGGTATGAATAAGATGTGTACATGTATGTAAATGATTTTTTTCTTCCTAATGTGAATTGTAATTTAATGCATGAGCAATAAATATTGTTTTTCTGCA
>NM_001124637.1
TTTCTCCTCGTTCATTTCACGCTATCAGTCCAGCTAAGTTTAATAAACAGATACCTTGGGAAAAAGTCCGGCGTGAGAAGAACATTTGGTTGTTTACTTCGCTACCATACAGGACCAAGCAAGGACGAGACAGTGAATGGAAAATGGAGTGTatggtcctgcaggtgaagaagccgaatgtggaggtcctgagctggtgTGGTTAAACatggtctacggttgtgaggctgtttggacgtactgccaaattctctaaaacaacgttggaggcagccaatgATGCCACTTTCTGTTGATGATGTGGATTGTAAAAAGGAGCCACTTCTAGAAGACTCGGATTATAATGTCTACACCCGGTTTATGAAGTCTCATCGGTGCTATGACTTGGTCCCTACCAGCTCCAAGTTGGTGGTGTTCGATACTTCACTGCAGGTAAAGAAGGCATTTTTCGCTCTGGTGTCCAATGGGGTGAGAGCAGCACCACTCTGGGACTGTAAGAAGCAGTGTTTTGTAGGCATGCTGACCATCACAGACTTCATCAACATCCTCCATCGCTACTACAAGTCTCCTTTGGTACAGATATATGAGCTGGAGGAGCACAAGATAGAGACGTGGAGAGAAGTCTACCTTCAAGACTCCTTCAAGCCCCTAGTCAGCATATCCCCCAATGAAAGtctgtatGACGCCGTGTCGTCTCTGCTGAAGAATAAGATCCACAGACTGCCTGTGATCGACCCTCTGACAGGGAACACCCTCTACATCCTCACTCACAAGAGGATCCTCAAGTTCCTCAAGCTCTTTATATCGGAGATGCCGAAACCTGCTTTCTTAGGCCAGACTCTAGAGGAACTGGGCATCGGAACATTCCATAAGATTGCAGTGGTGCGTTCTGACACACCTCTTTACACAGCACTGGGCATCTTCGTGGAGCAGAGAGTGTCTGCCCTGCCTGTCGTCGATGACAATGGACGAGTGGTGGACATTTACTCCAAATTTGATGTCATTAACCTAGCTGCAGAGAAGACGTACAACAACCTGGATGTGACTGTGACCAAAGCCCTGCAGCACCGCTCTCAGTATTTTGAGGGAGTGCTCACCTGCAACACACACGACACACTGGAGTCCATCATAAACAGACTGGTAGAGgcagagGTGCACAGGCTGGTGGTGGTTGATGAGCAGGAGGTGGTGAAGggtattgtctctctctcagacatcCTCCAGGCACTGGTGCTCACTAATGGAGACGGAGACAAGGGAACTGCTTGAAGGAGTGATGAAGGGAAGCCTCCTCCAAAAAGATGAGGATAAATAGAGAGGAGGATGATCctgaaggagaggaagaaataGGAGTGCCGTGGGAGAGGGAAAGATAGGAATCTGTCAACAACCCCTCCTGTACAAATGTACGTCTTGAACATgaggatctctctctctgcacaaaAATGTGAATCCCATTGACTTTCTCAATTCAGCAATATAGACACATAGGGACACTTTAAACCAAGCCAAAAACAAACAAGAAGCGGCCAATGGAGTGGAGCTGTATGTCCATTGTCCACTCTGAGCGGCCCAACACAACCTAGTGTCCCTCCTCTATTGGCGCAGGTGATGGACCGATACAGTGAAGGAATGATGTCTAGTTATGTGAAGGGGATCAATTATCCATTTCTCAGACAGATCCATTCCCTACCCGTTCTCTCCCATTTGGTCTGTAGACACTGGAGAGAGGAGTCAGAAACTTTCCACCCTGTCCCTTAACTGAGCAGCATTCCTTTTCCCCCATCATCCTTTTGGGCTGGAGTCTATAAAGCACAACAAGCCAATCATGGATCAAAAGATCATGCATGTCACAGTGGAACAATATATATTAGTACTGGAAGCTACCACAGCAACTCGGCTGTTTTGGTTACAGTAGGTGAAGTCTGGAATGTCCGAGTTGGCACTGCTGTAGCTGTAATTAATTTTATTTCTAATATCGATGCACAACCACTGACTTATGTAGTAAACGAGTTGTTTCTGATTTGCTATTTGGCATAGCGTACATTTCACAATTTTTTTCTTATTCTCTCTTCAGTTTGTAAAGTGTCATGTGAATTGGAGTG

Function

NR:

description
5'-AMP-activated protein kinase gamma-1 subunit isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0030554 adenyl nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K07200 PRKAG; 5'-AMP-activated protein kinase, regulatory gamma subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567414.2 False 2750 mRNA 0.45 13 62506856 62528639
NM_001124637.1 True 2105 mRNA 0.47 14 62507033 62528044

Neighbor

gene id symbol gene type direction distance location
LOC110494318 rheb coding upstream 10325 62491971 ~ 62496531 (+)
LOC110494314 LOC106565532 coding upstream 15706 62471931 ~ 62491150 (+)
LOC110493234 NA coding upstream 73791 62426544 ~ 62433065 (+)
LOC110494317 LOC106565535 coding upstream 89164 62405413 ~ 62417692 (+)
LOC110494308 LOC106565540 coding upstream 220018 62282838 ~ 62286838 (+)
LOC110494319 LOC106565529 coding downstream 47346 62575985 ~ 62649525 (+)
LOC110493236 LOC106583228 coding downstream 219132 62747771 ~ 62760165 (+)
c1galt1b LOC106565526 coding downstream 234843 62763482 ~ 62774441 (+)
LOC110494322 LOC106565525 coding downstream 279018 62807657 ~ 62812224 (+)
stat2 stat2 coding downstream 297929 62826568 ~ 62839920 (+)
G1472966 LOC106565537 non-coding upstream 136242 62367843 ~ 62370614 (+)
G1472961 LOC106565537 non-coding upstream 147854 62356922 ~ 62359002 (+)
G1472883 NA non-coding upstream 291284 62214323 ~ 62215572 (+)
G1472820 NA non-coding upstream 399420 62106012 ~ 62107436 (+)
G1473067 NA non-coding downstream 23161 62551800 ~ 62552243 (+)
G1473082 NA non-coding downstream 37110 62565749 ~ 62566066 (+)
G1473083 NA non-coding downstream 37455 62566094 ~ 62566299 (+)
G1473085 NA non-coding downstream 39581 62568220 ~ 62568458 (+)
G1473120 NA non-coding downstream 82498 62611137 ~ 62611843 (+)
LOC110494283 LOC106565563 other upstream 949818 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1507793 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2402849 60101892 ~ 60104007 (+)
G1469076 NA other upstream 3998971 58507297 ~ 58507885 (+)
G1467219 NA other upstream 4892556 57589865 ~ 57614300 (+)
G1473171 LOC106581772 other downstream 169864 62698503 ~ 62698815 (+)
G1473177 NA other downstream 181700 62710339 ~ 62711136 (+)
G1474159 NA other downstream 688309 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 1129805 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 1155451 63684043 ~ 63691033 (+)

Expression


Co-expression Network