LOC110494313 (LOC106565530)


Basic Information

Item Value
gene id LOC110494313
gene name LOC106565530
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62531079 ~ 62549639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569270.2
cgtgtctgtctgtctgtctgttgtctgaCTGGAGCTGTGTGTTTTTGTCCGCTCCGCTGTCAATACCACACTACTAGCCCAAATATTAATGCAATGCAATGGGAATATAGCGATCATGGCTAATAATCTAATTTTGTTAATTATTCTTGTCCTGGTTTGCATATTTGGAATTTATGATGctTTGTGGTGTAACTGCACCACAGCCCAGTGTGAGAAGACTGGCTCCCAGTGTGAGACAGACGGGGCCTGCATGGCCTCCACGTCTTTCATCAATGGGCTGGAGCAGCACATCCGTATCTGCATCACCCGGGACAAGCTGGTACCTCCGGGCCAGCCCTTCTACTGCCTGAGCGCTGAGGGCCTCCTctacacacactgctgctacactaACTACTGCAACAGCCTCGACCTCAAAGTAACCTCTGtGACGTCTCGGCCAGGCCTGGGGGGTGTTTTTGGCCCTGATGCTAAATGGGGTCCAGTGGAGCTGGTAGCAGTGGTCGCAGGGCCCGTCTGCCTGCTGTGTGTGCTGCTAATCATGGGTGTGTTCCTGTTCCAGTACCACCAGCAAGCCTACAGCCACAGGCAGAGGCTGGAGGTGGAGGACCCCTCCTGTGACCATCTCTACATGGCCAAGGACAAGACCCTGCAGGACCTCATTTACGACATGTCCACCTCTGGATCAGGCTCCGGCCTCCCTCTGTTTGTCCAGCGAACAGTGGCCAGGACCATCGTGCTGCAGGAGATTATAGGGAAAGGGCGTTTCGGGGAAGTGTGGCGCGgccgctggagaggaggagacgtGGCGGTGAAGATCTTTTCGTCCAGAGAGGAACGCTCCTGGTTCCGCGAGGCTGAGATCTACCAGACCATTATGCTGCGCCACGAAAACATCCTGGGATTCATCGCCGCCGACAACAAAGATAATGGCACATGGACCCAGCTGTGGCTGGTGTCAGACTACCACGAATACGGCTCTCTGTTTGACTACCTGAACCGTTACTCCATCACCATCGAGGGAATGATCAAACTGGCACTGTCTGCTGCCAGCGGCCTGGCACACCTGCACATGGAGATCCTGGGCACACAGGGTAAGCCTGGTATTGCCCACCGGGACCTCAAGTCTAAGAACATCCTGGTGAAGAAAAACAGTACCTGTGCCATTGCTGACCTGGGGCTGGCCGTGCGCCATGAGTCCACCACCGACACCATAGACATCGCCCCCAACCAGAGAGTGGGCACAAAGagGTACATGGCCCCTGAGGTTCTGGATGAGAGCATCAACATGAGGCATTTTGATTCGTTTAAGTGTGCAGACATCTACGCTCTGGGCCTGGTTTACTGGGAGATCACACGCCGCTGCAGCGCTGGAGGTATCCATGAGGAGTACCAGCTACCGTACTTTGACCTGGTGCCCTCTGACCCCTCCATAGAGGAGATGAGGAAGCTGGTGTGTGACCAGAAGCTACGGCCCAACGTGCCCAACTGGTGGCAGAGCTACGAGACCCTGCGTGTGATGGGGAAGATCATGAGGGAGTGTTGGTACGCCAACGGAGCTGCCCGCCTCACCGCCCTGCGCATCAAGAAGACCCTGTCCCAGCTGAGTGTCCAGGAGGACATCAAAGTCTGAGAGGGCCCTATCCCAAAGATCTGAGGAGAGCACTGGGGACTCTGTCCTGCACTAAAAAATactgagagagatagagggacagtGTCTTTTCAAAGAACGcacaaatgtaaacaaacaaaaaaacattacatGACTCTCCTGCCAGTTTTTGTTTTTAAAGCCACCACCGCCTGAGTTGTGACAAACCCTACCTCGTCTATTCAGCCAAAACTACTGGCAACCCCTGTCCATCCCTTGCCCCCAACCTATCCCACCATTCTGACCCACAAACCTGTTCCTGCAGCccccttctctgttctgttcctaCTAAAATGACTGCAATTACTGATATTACTACTACTCCCGATAATGCCCATGTTAATCTCAATGGCAGGataaacactgagtgtacaaaaccattaagaacaccttcctaatattggggtggaacccccccacccctttccctaagaacagcctcaattcatgttgactccaatgcttcccacagctgtgtcaagtt

Function

NR:

description
activin receptor type-1B-like

GO: NA

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569270.2 True 2132 mRNA 0.53 9 62531079 62549639

Neighbor

gene id symbol gene type direction distance location
LOC110494312 LOC106565533 coding downstream 72494 62437815 ~ 62458585 (-)
LOC110494311 LOC106565537 coding downstream 139173 62356878 ~ 62391906 (-)
LOC110494315 LOC106565538 coding downstream 179363 62333800 ~ 62351716 (-)
LOC110494310 NA coding downstream 201865 62327517 ~ 62329214 (-)
crbn crbn coding downstream 206502 62306845 ~ 62324577 (-)
LOC110493235 LOC106565607 coding upstream 4339 62553978 ~ 62560017 (-)
LOC110495185 LOC106565606 coding upstream 101049 62650688 ~ 62653187 (-)
LOC110494320 LOC106565528 coding upstream 119576 62669215 ~ 62695066 (-)
LOC110494324 gpr84 coding upstream 290637 62840276 ~ 62845145 (-)
LOC110494325 LOC106565522 coding upstream 299330 62848969 ~ 62918172 (-)
G1473734 NA non-coding downstream 26033 62504479 ~ 62505046 (-)
LOC110494301 LOC106565546 non-coding downstream 448836 62081247 ~ 62100547 (-)
G1473420 LOC106565550 non-coding downstream 603334 61923577 ~ 61927745 (-)
G1473389 NA non-coding downstream 679549 61817749 ~ 61851530 (-)
G1473767 NA non-coding upstream 25095 62574734 ~ 62574962 (-)
G1473803 NA non-coding upstream 80129 62629768 ~ 62630862 (-)
G1473816 NA non-coding upstream 109675 62659314 ~ 62659639 (-)
G1473840 NA non-coding upstream 151355 62700994 ~ 62701250 (-)
ccdc174 NA other downstream 280441 62246379 ~ 62250654 (-)
G1471564 NA other downstream 1891744 60638180 ~ 60639335 (-)
G1471219 srgap3 other downstream 2154487 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 2423892 60104033 ~ 60110249 (-)
LOC110494253 LOC106565590 other downstream 2534753 59990975 ~ 59999740 (-)
G1473866 NA other upstream 180514 62730153 ~ 62730503 (-)
G1474395 NA other upstream 499000 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 584186 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 857266 63403851 ~ 63409818 (-)
G1474741 LOC100136012 other upstream 960477 63510116 ~ 63510543 (-)

Expression


Co-expression Network