LOC110495185 (LOC106565606)


Basic Information

Item Value
gene id LOC110495185
gene name LOC106565606
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62650688 ~ 62653187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570502.2
TCAGTGAAGACAAGGTTGCTGAAAGTTTGTCACCTAAAATTACTGGGAGAGATAGATTGCAGAAGGGATACCACCGGAGCCCGGATTTTGGAATTGTTTCTACAATCTGTTTTTATTCTATGGTATTTTTATTTCTTCACGATAATTTATAGAACACGTTATggggtttatttattttttcagtaAAGGAGTCTGACTGGATGAGAATTCAGACACTGCCAAATCTCGTTTTCTAGATAAGATTTTGTTTCGGTGCGCTGCGACCAGTCAAAAAGCTACATTGGCCGCAGATGCGCTTAGTGGAGACACAAAAACTGATGGCCGCTTTGCCGGGGACCGATCACTTTCTACAACCTTTCTTACAGCACCGCATAGCCAGCTCCTCTCCTGAGAACGAGCCCCATCCCCTATCCTCCTTCCTGGCCAGAACCTGTGGCCAAGCCCATCTGGGAGGCAGTGGAGTGGGGCAGGAGCGGCAACACCATCCTTATGAGGGGACCATGAGCTCCATGACTGGGATGCTCCAGCTGTGGGGAGGGGATGTGGTCCAGAGCTCTAGTCTTGGGGTCCAACAGGTGGCAACTCTGACAGTGCCAAAAGTATCTTTTCCTGGCCACATCCAGAGTGGACTGGGCcctcacccccaccaccaccaccaccacctccatgagCTGCCTCTCACCCCTCCGGCTGAGCCCTCCTCCACCCCGACTGCCCACGCCTTTGATCTCTCTCCAGGAAAGATGCTCGCTCCTCAGGTCCAGGGTAGCTCTCATACCCCATACTTCCACCACCAGAACAATAGTATTGGGCAGAACTTTCCTAACTTCCTCCAAGTTTCCACAACAAGACACCCCTACCACCCTAGTGGGTATACAGAGGAAGGTCAGCAATGGTGGAGCCTGCCGCAGACAACCAGCAGCCCCCATGGCCATCACCAACCTCACAGCCacccccaccatcaccaccctcaCCCCTTTGCCCTGGGCAGACAGCTGGTGTTGGGGCACCAGCCTCAGATCACGGCCCTCCTCCAGGGCTCATCCAAGGGCTTGCTGGGCTCCACACGTCGCTGCAGGCGCTGCAAGTGCCCCAACTGCCAGTCCACTTCTGGGGGTACAGGGGCTCCAGCAAACCCAGAAGAACCAGGCCGGAGGAGGCTCCACATCTGCCACCTGCCCGAGTGTGGCAAGGTGTATAAGAAGACGTCCCACCTGAAGGCCCACCTGCGCTGGCATGCTGGGGAGCGGCCCTTCCTCTGCAGCTGGCTCTTCTGCGGGAAGAACTTCACACGCTCGGACGAGCTGCAGAGGCATCTGCGCACACACACGGGGGAGAAGCGTTTCAGCTGTCAGGCATGTGGGAAGAGGTTCATGCGGAGCGACCACCTAGCAAAACATGAGAAGACCCACCAGGGTAAGAGGGGACAGCCAGACACAAGGGATAGCCAGGGCCCCCAGCAGGAGGCTCCACAGCGACCGGGTGGTAGCAGAGGACCAGACAGGAACATCAAGAAGGAGTAGAGAAAAGACCAAGAGAGGTAAGCCAAGGGACTCACAGTCAGTGTGCTGTATTCTGAGACCCCCAGCgccagtctctgtgtgtggagtccaGGTGATGAGACCCTCAGAAAGACAGGAGGGCCAGTGTGGAGACTGAGAGTCAAGGGCAGACCAGTGATTCAATGGCCTTTCTCTTGAAAAAAAATAACTTCGTGCAAACACACAAACTTTTACACTGTCAAACCATTGTCTTGACAACGTGTTTGTCATGGTCATTGTAGCCAGCATTGTCCCCGGGCCACCAGCAGGAGGCCTGTGATCTTCAGAGGCCGTTCTGTTcagcatgcctgcctgcctgtgtggaGACTCGCAATAAAAGCAGGAGGACTGAGGTGATTGAATATCCCTTTCTCATGGACCCCTAATGGAGATAAGTGGTCTCAGAGAATGACCAAAGACATCAGAGAGGAAGTCAGAGTACAAAGATTCATGGAAATAATGCTGTTTACTATGGTTATTTTCATTCAGTCTGCCAGCAGAGTATTTTCAGTGTTACGATTTTCAATAATAAACACTAATTACACCACAATGCTCTTTTGactattgtgttta
>TU1685528
ACAGCACCGCATAGCCAGCTCCTCTCCTGAGAACGAGCCCCATCCCCTATCCTCCTTCCTGGCCAGAACCTGTGGCCAAGCCCATCTGGGAGGCAGTGGAGTGGGGCAGGAGCGGCAACACCATCCTTATGAGGGGACCATGAGCTCCATGACTGGGATGCTCCAGCTGTGGGGAGGGGATGTGGTCCAGAGCTCTAGTCTTGGGGTCCAACAGGTGGCAACTCTGACAGTGCCAAAAGTATCTTTTCCTGGCCACATCCAGAGTGGACTGGGCcctcacccccaccaccaccaccaccac

Function

NR:

description
transcription factor Sp5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570502.2 False 2114 mRNA 0.53 2 62650688 62653187
TU1685528 True 301 lncRNA 0.60 1 62652140 62652440

Neighbor

gene id symbol gene type direction distance location
LOC110493235 LOC106565607 coding downstream 90671 62553978 ~ 62560017 (-)
LOC110494313 LOC106565530 coding downstream 101049 62531079 ~ 62549639 (-)
LOC110494312 LOC106565533 coding downstream 192103 62437815 ~ 62458585 (-)
LOC110494311 LOC106565537 coding downstream 258782 62356878 ~ 62391906 (-)
LOC110494315 LOC106565538 coding downstream 298972 62333800 ~ 62351716 (-)
LOC110494320 LOC106565528 coding upstream 16028 62669215 ~ 62695066 (-)
LOC110494324 gpr84 coding upstream 187089 62840276 ~ 62845145 (-)
LOC110494325 LOC106565522 coding upstream 195782 62848969 ~ 62918172 (-)
LOC110494326 LOC106565520 coding upstream 282176 62935363 ~ 62939851 (-)
LOC110493237 endou coding upstream 288561 62941748 ~ 62950451 (-)
G1473803 NA non-coding downstream 19826 62629768 ~ 62630862 (-)
G1473767 NA non-coding downstream 75726 62574734 ~ 62574962 (-)
G1473734 NA non-coding downstream 145642 62504479 ~ 62505046 (-)
LOC110494310 NA non-coding downstream 321548 62327517 ~ 62329214 (-)
LOC110494301 LOC106565546 non-coding downstream 568445 62081247 ~ 62100547 (-)
G1473816 NA non-coding upstream 6127 62659314 ~ 62659639 (-)
G1473840 NA non-coding upstream 47807 62700994 ~ 62701250 (-)
G1473841 NA non-coding upstream 49159 62702346 ~ 62702636 (-)
G1473844 NA non-coding upstream 55829 62709016 ~ 62709613 (-)
G1473845 NA non-coding upstream 56468 62709655 ~ 62710091 (-)
ccdc174 NA other downstream 400050 62246379 ~ 62250654 (-)
G1471564 NA other downstream 2011353 60638180 ~ 60639335 (-)
G1471219 srgap3 other downstream 2274096 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 2543501 60104033 ~ 60110249 (-)
LOC110494253 LOC106565590 other downstream 2654362 59990975 ~ 59999740 (-)
G1473866 NA other upstream 76966 62730153 ~ 62730503 (-)
G1474395 NA other upstream 395452 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 480638 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 753718 63403851 ~ 63409818 (-)
G1474741 LOC100136012 other upstream 856929 63510116 ~ 63510543 (-)

Expression


Co-expression Network