LOC110494320 (LOC106565528)



Basic Information


Item Value
gene id LOC110494320
gene name LOC106565528
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62669215 ~ 62695066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021569276.2
tttctgtcaagccgtctgcacatacagtttgacgcatacGTTAGATAAATTCAACGTATGCACCACACCCAATGAACTACAACTacctctgcaacgcaatgctgcaaggtaAACGCAGCGTTTTATTGGAAATGAATGTCATCGCAAAGCAATGCAAAGacactgtcggtgtgatcgaAGCTTTACCTTCATTCTGCTGCGATTCCAATTGGGCGCTCGTGGCATATCCCTCTCGCGTCCTTTTAAGCCACGAGTCTTGTCGGAAAAACGCAGAGGCGAGGTGCAAGTACACAGCTGCTGGGACGAAGTATATAATCTATTGGAATTAAAACAGTGTGACTGCCGGATTCAAATAAATGGAATATGGGGAAAGTCCTTGCCTGTTCATTATGGGATTTTGGGGAATGCTATGGCCTACAGGAGACATCTTCTCTCTGAGTGGATACAGGCAATAGGTTTTTAGGATGCGTTCCCTGAGGAAGACAGTGTTGTTGGCCATTGTGGcatcagtggtgttggtggtTGCCCTCCTCCATTCTTGGCCCACCAGGGCCTACACCACAGTGGATGTCCGCCagagaccagggcctatagtagAGAGGCACCTGGAGGAGAGGCTCCCAGAACCGGACCAAAGATCTGCCAACATCCCCTATCACCTGAAGGAGAGTGTTGCAGGTCTGTTGGCACGTAACGGGTGCGTGTGTGAGGGTGAGAGTGGTGGCGTGACCCTGCCCTTTGCCCAGCTGCTGTTCCCACGGGTGTCGGCCCACCCCCTGCACACTGCTTTTGATGCCTCTGAGCTGGAGGAGATGAAAAGACGGAGGGCCAAGGAGTACCAGGGCTTCCAGATGAGGTCTCAGACTCCGGTAGATATGCTCATTGTGGCCGAGGCCAACAATCCTCTGCAGTACCCAACACAGGGGGTGGAAGTACGGCCCCTCAAAACCATACTCATCCCAGGGCTTGCCTTACAAGACCTTCCCAGAGAGCTGTACACAGTCAACTTCACCTCCACCCTGGGAGTGTTAAATGTGGCAGCGGAGGTTGAGGGGGTAAAGGTCAAAGGTGACGGGGAGATGCACATGACCCTGATGAGCAGCCTGCTGCCCAACCTGAACCGGCAGTTACAGTTTGTCTCCTACACCAACACACTATTCCACCCTAGTACAGCAGACACAGTGCAGTTTGAGACCGAGGGACACCAAGCCATGTTCACCATCAAGATCCGTCATCGTGTAACTCCAAAACTCTACAACACAGGACCCAAAGGGGAATACAACATCAGTGCCCTTGTTACGATAGCAACCAAAACTTTCCTGCGCTATGACAAGCTCCAAGATCTCATCGACAGCGTGCGACGATACTATCCCGCTGTTACCATAGTAATAGCTGATGACAGCGAAAACCCCAAGACTGTCTCTGGCCCCTACATCGAACATTACATCATGCCATTTGGaaagGGATGGTTTGCAGGACGGAACCTAGCTGTTTCCCAGGTGACCACTAAATATCTGTTGTGGGTGGATGATGACTTCATCTTCACGGCCAACACCAAGCTGGAGAAACTAGTGGACGTACTGGAGAAGACCACCCTGGATCTGgtgGGTGGTGCAGTGCGGGAGGCCACAGGCTACACTGCCACCTACAGGCAGACCATCTCCATTGagcaaggggaggaggaggagggcgacTGCCTTCACATGCGGAGGGCCTTCCACCACATCATACAGGGCTTCCCAAACTGTGTGGTCACTGACGGGGTCATCAACTTCTTCCTGGCACGCACAGACAAAGTCCAGCAGGTGGGCTTCGACCCCCGCCTGGCCAGAGTGGCTCACCTGGAGTTTTTCATTGATGGCCTTGGCTCGCTTCACGTGGGATCCTGTGATGATGTCATCGTAAATCACGCCACCAAGATCAAGCTTCCCTGGGTCAGCCAATCAGAGAGTGACAAGACTTACGCCAAGTTCCGCTACCCACCAGCCTCCTCGGACGCCACACACACCAAAAATGGCCTCCTCTATTTTAAGAACCACTTCCAGTGTTTGACTCACAATTAAATGTCATGTTTTTTTACCTGTAGCTTCTCCTCTCGTTCGAGATTCCTGCTCTTCCTGAGTTGCCAAAGAAGCCCTTGCCCGATGTGTCCCATCAGATAAGATTTTAGACAACCACATTAATGCTTTCCCTTAAAAACAGCCTTGCTTGTTTCACTCTAGAGGGATTGTCATTCAAACAGAGCAAAGCCGTCATTTCTCGTAACTTTGCTCTTCACTTGTGTACTCTTGATTGTAAACTCAAGGTAGAGATAATTTTAAGGCATTTAAGGTGCATTCGCCCctttgacattttccatattttgttacattacagccgtattctaaaatgtattaaattgtttttcccccctcattaatctacacacatcttggggcggcaggtagcctagtggttagagcattgggc
>XM_036950400.1
cccgaacaagaaggggagtccccttcggtaatattcgtgacacacagttgacaATGGGGAAAGTCCTTGCCTGTTCATTATGGGATTTTGGGGAATGCTATGGCCTACAGGAGACATCTTCTCTCTGAGTGGATACAGGCAATAGGTTTTTAGGATGCGTTCCCTGAGGAAGACAGTGTTGTTGGCCATTGTGGcatcagtggtgttggtggtTGCCCTCCTCCATTCTTGGCCCACCAGGGCCTACACCACAGTGGATGTCCGCCagagaccagggcctatagtagAGAGGCACCTGGAGGAGAGGCTCCCAGAACCGGACCAAAGATCTGCCAACATCCCCTATCACCTGAAGGAGAGTGTTGCAGGTCTGTTGGCACGTAACGGGTGCGTGTGTGAGGGTGAGAGTGGTGGCGTGACCCTGCCCTTTGCCCAGCTGCTGTTCCCACGGGTGTCGGCCCACCCCCTGCACACTGCTTTTGATGCCTCTGAGCTGGAGGAGATGAAAAGACGGAGGGCCAAGGAGTACCAGGGCTTCCAGATGAGGTCTCAGACTCCGGTAGATATGCTCATTGTGGCCGAGGCCAACAATCCTCTGCAGTACCCAACACAGGGGGTGGAAGTACGGCCCCTCAAAACCATACTCATCCCAGGGCTTGCCTTACAAGACCTTCCCAGAGAGCTGTACACAGTCAACTTCACCTCCACCCTGGGAGTGTTAAATGTGGCAGCGGAGGTTGAGGGGGTAAAGGTCAAAGGTGACGGGGAGATGCACATGACCCTGATGAGCAGCCTGCTGCCCAACCTGAACCGGCAGTTACAGTTTGTCTCCTACACCAACACACTATTCCACCCTAGTACAGCAGACACAGTGCAGTTTGAGACCGAGGGACACCAAGCCATGTTCACCATCAAGATCCGTCATCGTGTAACTCCAAAACTCTACAACACAGGACCCAAAGGGGAATACAACATCAGTGCCCTTGTTACGATAGCAACCAAAACTTTCCTGCGCTATGACAAGCTCCAAGATCTCATCGACAGCGTGCGACGATACTATCCCGCTGTTACCATAGTAATAGCTGATGACAGCGAAAACCCCAAGACTGTCTCTGGCCCCTACATCGAACATTACATCATGCCATTTGGaaagGGATGGTTTGCAGGACGGAACCTAGCTGTTTCCCAGGTGACCACTAAATATCTGTTGTGGGTGGATGATGACTTCATCTTCACGGCCAACACCAAGCTGGAGAAACTAGTGGACGTACTGGAGAAGACCACCCTGGATCTGgtgGGTGGTGCAGTGCGGGAGGCCACAGGCTACACTGCCACCTACAGGCAGACCATCTCCATTGagcaaggggaggaggaggagggcgacTGCCTTCACATGCGGAGGGCCTTCCACCACATCATACAGGGCTTCCCAAACTGTGTGGTCACTGACGGGGTCATCAACTTCTTCCTGGCACGCACAGACAAAGTCCAGCAGGTGGGCTTCGACCCCCGCCTGGCCAGAGTGGCTCACCTGGAGTTTTTCATTGATGGCCTTGGCTCGCTTCACGTGGGATCCTGTGATGATGTCATCGTAAATCACGCCACCAAGATCAAGCTTCCCTGGGTCAGCCAATCAGAGAGTGACAAGACTTACGCCAAGTTCCGCTACCCACCAGCCTCCTCGGACGCCACACACACCAAAAATGGCCTCCTCTATTTTAAGAACCACTTCCAGTGTTTGACTCACAATTAAATGTCATGTTTTTTTACCTGTAGCTTCTCCTCTCGTTCGAGATTCCTGCTCTTCCTGAGTTGCCAAAGAAGCCCTTGCCCGATGTGTCCCATCAGATAAGATTTTAGACAACCACATTAATGCTTTCCCTTAAAAACAGCCTTGCTTGTTTCACTCTAGAGGGATTGTCATTCAAACAGAGCAAAGCCGTCATTTCTCGTAACTTTGCTCTTCACTTGTGTACTCTTGATTGTAAACTCAAGGTAGAGATAATTTTAAGGCATTTAAGGTGCATTCGCCCctttgacattttccatattttgttacattacagccgtattctaaaatgtattaaattgtttttcccccctcattaatctacacacatcttggggcggcaggtagcctagtggttagagcattgggc
>XM_036950401.1
ctagtagaccggcgacaacgaccgccacccgaacaagaaggggagtccccttcgATGGGGAAAGTCCTTGCCTGTTCATTATGGGATTTTGGGGAATGCTATGGCCTACAGGAGACATCTTCTCTCTGAGTGGATACAGGCAATAGGTTTTTAGGATGCGTTCCCTGAGGAAGACAGTGTTGTTGGCCATTGTGGcatcagtggtgttggtggtTGCCCTCCTCCATTCTTGGCCCACCAGGGCCTACACCACAGTGGATGTCCGCCagagaccagggcctatagtagAGAGGCACCTGGAGGAGAGGCTCCCAGAACCGGACCAAAGATCTGCCAACATCCCCTATCACCTGAAGGAGAGTGTTGCAGGTCTGTTGGCACGTAACGGGTGCGTGTGTGAGGGTGAGAGTGGTGGCGTGACCCTGCCCTTTGCCCAGCTGCTGTTCCCACGGGTGTCGGCCCACCCCCTGCACACTGCTTTTGATGCCTCTGAGCTGGAGGAGATGAAAAGACGGAGGGCCAAGGAGTACCAGGGCTTCCAGATGAGGTCTCAGACTCCGGTAGATATGCTCATTGTGGCCGAGGCCAACAATCCTCTGCAGTACCCAACACAGGGGGTGGAAGTACGGCCCCTCAAAACCATACTCATCCCAGGGCTTGCCTTACAAGACCTTCCCAGAGAGCTGTACACAGTCAACTTCACCTCCACCCTGGGAGTGTTAAATGTGGCAGCGGAGGTTGAGGGGGTAAAGGTCAAAGGTGACGGGGAGATGCACATGACCCTGATGAGCAGCCTGCTGCCCAACCTGAACCGGCAGTTACAGTTTGTCTCCTACACCAACACACTATTCCACCCTAGTACAGCAGACACAGTGCAGTTTGAGACCGAGGGACACCAAGCCATGTTCACCATCAAGATCCGTCATCGTGTAACTCCAAAACTCTACAACACAGGACCCAAAGGGGAATACAACATCAGTGCCCTTGTTACGATAGCAACCAAAACTTTCCTGCGCTATGACAAGCTCCAAGATCTCATCGACAGCGTGCGACGATACTATCCCGCTGTTACCATAGTAATAGCTGATGACAGCGAAAACCCCAAGACTGTCTCTGGCCCCTACATCGAACATTACATCATGCCATTTGGaaagGGATGGTTTGCAGGACGGAACCTAGCTGTTTCCCAGGTGACCACTAAATATCTGTTGTGGGTGGATGATGACTTCATCTTCACGGCCAACACCAAGCTGGAGAAACTAGTGGACGTACTGGAGAAGACCACCCTGGATCTGgtgGGTGGTGCAGTGCGGGAGGCCACAGGCTACACTGCCACCTACAGGCAGACCATCTCCATTGagcaaggggaggaggaggagggcgacTGCCTTCACATGCGGAGGGCCTTCCACCACATCATACAGGGCTTCCCAAACTGTGTGGTCACTGACGGGGTCATCAACTTCTTCCTGGCACGCACAGACAAAGTCCAGCAGGTGGGCTTCGACCCCCGCCTGGCCAGAGTGGCTCACCTGGAGTTTTTCATTGATGGCCTTGGCTCGCTTCACGTGGGATCCTGTGATGATGTCATCGTAAATCACGCCACCAAGATCAAGCTTCCCTGGGTCAGCCAATCAGAGAGTGACAAGACTTACGCCAAGTTCCGCTACCCACCAGCCTCCTCGGACGCCACACACACCAAAAATGGCCTCCTCTATTTTAAGAACCACTTCCAGTGTTTGACTCACAATTAAATGTCATGTTTTTTTACCTGTAGCTTCTCCTCTCGTTCGAGATTCCTGCTCTTCCTGAGTTGCCAAAGAAGCCCTTGCCCGATGTGTCCCATCAGATAAGATTTTAGACAACCACATTAATGCTTTCCCTTAAAAACAGCCTTGCTTGTTTCACTCTAGAGGGATTGTCATTCAAACAGAGCAAAGCCGTCATTTCTCGTAACTTTGCTCTTCACTTGTGTACTCTTGATTGTAAACTCAAGGTAGAGATAATTTTAAGGCATTTAAGGTGCATTCGCCCctttgacattttccatattttgttacattacagccgtattctaaaatgtattaaattgtttttcccccctcattaatctacacacatcttggggcggcaggtagcctagtggttagagcattgggc

Function


NR:

description
beta-1,4 N-acetylgalactosaminyltransferase 1-like

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00725 B4GALNT1, GALGT; (N-Acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021569276.2 False 2469 mRNA 0.50 12 62669215 62694515
XM_036950400.1 False 2159 mRNA 0.51 12 62669215 62695039
XM_036950401.1 True 2160 mRNA 0.52 12 62669215 62695066

Neighbor


gene id symbol gene type direction distance location
LOC110495185 LOC106565606 coding downstream 16028 62650688 ~ 62653187 (-)
LOC110493235 LOC106565607 coding downstream 109198 62553978 ~ 62560017 (-)
LOC110494313 LOC106565530 coding downstream 119576 62531079 ~ 62549639 (-)
LOC110494312 LOC106565533 coding downstream 210630 62437815 ~ 62458585 (-)
LOC110494311 LOC106565537 coding downstream 277309 62356878 ~ 62391906 (-)
LOC110494324 gpr84 coding upstream 145210 62840276 ~ 62845145 (-)
LOC110494325 LOC106565522 coding upstream 153903 62848969 ~ 62918172 (-)
LOC110494326 LOC106565520 coding upstream 240297 62935363 ~ 62939851 (-)
LOC110493237 endou coding upstream 246682 62941748 ~ 62950451 (-)
smarcc2 LOC106583239 coding upstream 275971 62971037 ~ 62984902 (-)
G1473816 NA non-coding downstream 9576 62659314 ~ 62659639 (-)
G1473803 NA non-coding downstream 38353 62629768 ~ 62630862 (-)
G1473767 NA non-coding downstream 94253 62574734 ~ 62574962 (-)
G1473734 NA non-coding downstream 164169 62504479 ~ 62505046 (-)
G1473840 NA non-coding upstream 5928 62700994 ~ 62701250 (-)
G1473841 NA non-coding upstream 7280 62702346 ~ 62702636 (-)
G1473844 NA non-coding upstream 13950 62709016 ~ 62709613 (-)
G1473845 NA non-coding upstream 14589 62709655 ~ 62710091 (-)
G1473847 NA non-coding upstream 16623 62711689 ~ 62711942 (-)
ccdc174 NA other downstream 418577 62246379 ~ 62250654 (-)
G1471564 NA other downstream 2029880 60638180 ~ 60639335 (-)
G1471219 srgap3 other downstream 2292623 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 2562028 60104033 ~ 60110249 (-)
LOC110494253 LOC106565590 other downstream 2672889 59990975 ~ 59999740 (-)
G1473866 NA other upstream 35087 62730153 ~ 62730503 (-)
G1474395 NA other upstream 353573 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 438759 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 711839 63403851 ~ 63409818 (-)
G1474741 LOC100136012 other upstream 815050 63510116 ~ 63510543 (-)

Expression



Co-expression Network