LOC110494322 (LOC106565525)


Basic Information

Item Value
gene id LOC110494322
gene name LOC106565525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62807657 ~ 62812224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569280.2
ctacagggacagacagagacatagagagaaaacaaaacaaaacagcatTAGAAAACATGGACCCTCTCCATGTGAATCAACATTCCAGCCCTGTCCTGCCTGTTGAGCAATGAGGCCAactcagagaaagagaaagggggaggggagagaaagcgGGTAAGTGAGAAGGAGGGGTGAAGGGTGTCATTGGTGAGGGGCGAAAACCCCAttggagaagaagagaacagcTAGGGTTTCATTTGGGCAAAAGCTGTGTTACATAATGAAGTAACCTGGCTCAGAGTATCACATACTACGGATGTTTGAGCTTCCTGTGTACAGCATTATTGGAGTAGAACTCACAGGTAAAATGATGCACCCCAAGATGAGGGGTCTGTTTCTTATCCAACTGCTGCTGATTGAACAGGCTCTGTGTAGAACACCAACTCCCCCTGTTCTGAAGACCACTCCGCTCTCCAAGACCTCCGTTTTAGGGGAGGGGGAGACTATCAAAAAGGAGCGGCAGTCACTTCTGGGGTCCCAGACCCAACTTGGTCTCCCATCAGATGCAGCTGAGAGTGCGGCCCCTGAAGAGTGGGTGGTGCAGGATGAGGCCAGGGCCCAGTCTGCCCAGCGTATTGTCACCACGCTGAAGGCCAAGCTGCAGGGCCGGATCCTCGTCCAGGCCAACACCAGCTGTGAGGAGCTGCTGTCTGCCTCTACACTGCAGGACCCTGCCTCAGCCCTGTTCCCCCGGGAGCTCCTGGGCCTATCCCTGGTGCCAGTGCTGGTGGCGGCAGGCTGTTCTCAGGAGGCCCAGACCCTGATACTCAGAATGTACAACCTGTTGGGGGTGGAGGACACAGAGGAGCTCCTCATAGAGGTGGAGAGCCTTATGGCAAAGAGGGCATCCCGCCCCAGAGCCACTACCCCCCCTGCCTCACACATGGAGAAGGTTCAGGCAGAGCGCCACCTACAGGCAGTGATGTTCAACATACAGCAGCTGGCCAGGGCTGGGGTGGGTCAGAGGGGGCACAGGGCCTCTGGAAGAGGGAAGCAGGAGGAGAGGTGTCAGGGCTGGACCAGGGTGAACGGGACCCTGCTTTTGGGGGAGACAGTGCAGGGAGCCACCACAGGGGGGCTGGAGGCGGCTGTAAGTGTCTGTGAGAGCCTGGGGTCCCAGTGTGCTGGTGTGTCCCATAACGGAGGGCAGTACCAGGCGGTTCTGATGTCAGGCAGCCGGGTGGTGCCCTCTGAGTACTTGGACTCAGAATGCTGGATTCGACAGTGCCAGGTGCAGGATGAGGAGTCACCTGGGGCCTCAGGGCGGCGGGCGCGGCGCAGCCCTCAGCGGAACTGCATCAACAAAAAGGAGGAGCACGTGTACAATGTGGTGGAGTGGATCCCTGTCGTCAGCACCCTTTACAACCTGGGCACGGCCGTCTACTACACCTCTGTCAACTGCTCCGAGACGGCCAAGGAGAGAGCCATCCTCAGCGCCGTCGACCTGGGCACTGACGCCCTCATGGCTGTCACTGGGGGAACGGTGGGCGTGGCAGGCTACGTGGCCGGGGCTGGAGTGAAGACGGGGGTGAAGGCTGGGATCAAGTACCTGCTGTCCTCCATGAAGCAGGAGGAGGACCTGATAGTTAATGAGTACAGTTGGGAGGAGGGAATCATCACCATACAGTAAACAGACAGTAGCCTGGTTGGTTGGTAGCCAGATATTATTTTGCTTAGCCAATGGCAGCATAAAAAGATCTGGAGACCAGGAAGTGGTCTCAGGGAACCACTGAGTAAACTCTAAGACCCCTTGACCTCTACTCCCCAATCCTCTCAACCCAAACCCTTTCTGTCCTCCTTCGGTACTATTGGTCAGGTCAGACTCAATTTACACATCTGATACTTCCAGTGCAGGGACTATTGTAACAGTACTACCTTTCagatgttgttttgtttgttctgtGTCCTCTAGAAACATATGGATCGAAATTCAAGCTGGCTATTTGTAAAAATATCAACTAATTGATTTATAAGCTATTTTTCCTTGATACATGAAAGTTTGCAACTGCCCTTGATTGATTAAATTATCATTTTAGCTAGTA

Function

NR:

description
uncharacterized protein LOC110494322

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569280.2 True 2084 mRNA 0.54 2 62807657 62812224

Neighbor

gene id symbol gene type direction distance location
c1galt1b LOC106565526 coding upstream 33216 62763482 ~ 62774441 (+)
LOC110493236 LOC106583228 coding upstream 47492 62747771 ~ 62760165 (+)
LOC110494319 LOC106565529 coding upstream 158132 62575985 ~ 62649525 (+)
LOC100136666 LOC100136666 coding upstream 279018 62506856 ~ 62528639 (+)
LOC110494318 rheb coding upstream 311126 62491971 ~ 62496531 (+)
stat2 stat2 coding downstream 14344 62826568 ~ 62839920 (+)
tsfm LOC106565519 coding downstream 144500 62956724 ~ 62958969 (+)
myl6 LOC106565518 coding downstream 147865 62960089 ~ 62968544 (+)
pfkmb LOC106565515 coding downstream 292371 63104595 ~ 63121550 (+)
itgb7 LOC106583060 coding downstream 312664 63124888 ~ 63141041 (+)
G1473945 NA non-coding upstream 2641 62804794 ~ 62805016 (+)
G1473937 NA non-coding upstream 16249 62791192 ~ 62791408 (+)
G1473935 NA non-coding upstream 23731 62783598 ~ 62783926 (+)
G1473934 NA non-coding upstream 24610 62782842 ~ 62783047 (+)
G1473933 NA non-coding upstream 25797 62781555 ~ 62781860 (+)
G1473947 NA non-coding downstream 2358 62814582 ~ 62814908 (+)
G1473948 NA non-coding downstream 2777 62815001 ~ 62815288 (+)
G1473950 NA non-coding downstream 8791 62821015 ~ 62821230 (+)
G1473953 NA non-coding downstream 10332 62822556 ~ 62822770 (+)
G1473911 NA non-coding downstream 14561 62826785 ~ 62827217 (+)
G1473177 NA other upstream 96521 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 108842 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1250619 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 1808594 60972478 ~ 60999063 (+)
G1470607 NA other upstream 2703650 60101892 ~ 60104007 (+)
G1474159 NA other downstream 404724 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 846220 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 871866 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1751150 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1796030 64608194 ~ 64625111 (+)

Expression


Co-expression Network