LOC110494326 (LOC106565520)


Basic Information

Item Value
gene id LOC110494326
gene name LOC106565520
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62935363 ~ 62939851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569287.2
CGTCACTCTGGGATGGAACACTGACAACTGCGAAGGAGACGCAGGGGAGAAAGTTCAAGATTGAGTGCTTTAGGCAAATTGAGATAGTAAACTGTAGGCTAAATCCGCTCAACAGCCAATAACAATTTACAGGAGGTCCTAGGGAGCGTTATTTCAAATATCAGGAGACCATGATGGCCAATTTGTACGGAAGGCCCAGCGAGGGGGCGGAGCTAGTCAGCTCTCTGGAGTGGATGGATGATGACGTGAGCTCCCCAGACGGAGACAAGCCAATCAAAGCACAGCGCTACAGACCAGGCGGAATGGGCCACCTGGGCAGGGAGCTGGGCAGCGAGGAtatggaggaggatgaggaggaggaggaagaggagggccaGGGAGACGGGAACGCTCCCAAACGCCGAGGGCCCAAGAGGAAAAGGATGACCAAAGCCCGGCAGGAGCGCTTCAAGGCGCGACGTGTGAAGGCTAACGCCCGGGAGCGCTCAAGGATGCACGGGCTGAACGACGCGCTGGAGAACCTGCGCAGCATCATGCCCTGCCACTCCAAGACTCAGAAACTGTCCAAAATCGAGACCCTGCGGCTGGCGCGCAACTACATCTGTGCCCTGTCTGAAGCCCTGGAAGGGGACCAGTCCACGGAGAGCAGGGCCTTCATGGATACCCTGTGTGAAGGCCTCTCCCAGCCCACCAGCAACTTGGTGGCTGGCTGTCTGCAGCTCGGGCCTGGGGGTTTTGTTGAGGAGAGGCCTGAGGACAGgaatggggggagaggagggccCACAGTCCTGGGAGGTGTGGGGATGGCTGTTAGACCAATCAGCTACTCCTCCCCCGGCCTGCCCAGCCCGCCCTATGGTACATTGGACTCCGCCCACCTGCTCCATCTGAGGGGAATGAAAGGAGGGGCTTACGAGAGCCACTCCCCTAATGACTGTAACACCCCTCCCTACGATGGCCCCCCAACACCCCCGCTCAGCATCGGCAATAACCTGGTGCCCAAGCAGTCTTCTCCCCACTACCTCCCCCCTCACCActaccccccctcctccatgGGCCTGTACCAGAGCGCCCGCTATGAGCTTCCCCTGGAGATGCCCTATGACTCGTACCACCCTCCTCACATGGCACCCCCGCAGATGGGAACAGTCTATGGGGATTAAGGGCCAGAGAGGACAGATGGGGCAGATGTTACTCTCTCCAACAACACAACAATCACCCTGCCCCAACTGGCTTCATCTTAACCTATGACTGAGGTGTTGGGAGAAATCAGACTTTGGTACTGAACACTGTGAAAGCAGCCCATCGTTGTGAACAACTGGGTAGTGCTGTTGTGGACTGTTGTTTACATTTGTGTACTGTAAAGGTTAGGGCTCAACACTGTCAAAGTCTGCTCATGATTGACTTTAAACCAGTTGTTTGCTGCGGTTGTTTCTGAATGCTGATTAGGTTAAAAGGCACCCACAACTTGACCATTTCCTATTCCTAGTTCCTATTGGTGGAAAGGCTGTCTTGAAGAAGGACTTCAGCTTGACCGCTATGACCACATTATGACCACAttatgaccacattatgacaACATTATGACCACATTATGACCACATTATGAGCACTTCTGACCAGCACTGGGAACATGAAACAGATCATTCACGTTAATGcattatacatttatttattatctTATTTAATATTTATATGAACTGCTGTTAGTAATGCTGTGTTTATCCGTTTTATATGTGTTTGGTCTTGGCCTTCTCTATTTGTGCTGTCCTTGTTACATTGTTGACGGACTCTGACAGTGTATCTGTTATCTCTCTGTGTCCATTTCTCCTTTGTTGTGTGTTCTTTCCTGTTTCACACTGAAAAGAGATTCTCATATAATATTGCTAGTGTAATGTTGCTGATGACCAAGGGGAAAACTGCCCGTGAGGAAATGAGAAATGTCTGCTGTTGTAATGAATAGAACAAATATAAATTCCAGAATGTGATTGAAGTTGAACTATCAGCCAGGTGGATCTTATTCATGGACATTCCTAAatcaaatatactgtatatgttgtatAATATTCTGTCCAGACACTTTCTCCATTGCCAAATATGTTCCTTTAAATGTACAAATGTTCCTCGAGCTGAAAACTTTTGGATTGTATTTTTTAACAAACATTTTATGAATTAAAACAATGGAAACTTA

Function

NR:

description
neurogenic differentiation factor 4-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569287.2 True 2191 mRNA 0.49 2 62935363 62939851

Neighbor

gene id symbol gene type direction distance location
LOC110494325 LOC106565522 coding downstream 17191 62848969 ~ 62918172 (-)
LOC110494324 gpr84 coding downstream 90218 62840276 ~ 62845145 (-)
LOC110494320 LOC106565528 coding downstream 240297 62669215 ~ 62695066 (-)
LOC110495185 LOC106565606 coding downstream 282176 62650688 ~ 62653187 (-)
LOC110493235 LOC106565607 coding downstream 375346 62553978 ~ 62560017 (-)
LOC110493237 endou coding upstream 1897 62941748 ~ 62950451 (-)
smarcc2 LOC106583239 coding upstream 31186 62971037 ~ 62984902 (-)
LOC110494331 LOC106565516 coding upstream 51005 62990855 ~ 63022358 (-)
LOC110494336 LOC106565676 coding upstream 261585 63201436 ~ 63210497 (-)
LOC110494343 LOC106565671 coding upstream 331934 63271785 ~ 63352919 (-)
G1474349 NA non-coding downstream 6512 62928616 ~ 62928851 (-)
G1474334 NA non-coding downstream 33515 62901628 ~ 62901848 (-)
G1474301 NA non-coding downstream 71915 62863235 ~ 62863448 (-)
G1474300 NA non-coding downstream 74848 62860153 ~ 62860515 (-)
G1474298 NA non-coding downstream 76577 62858459 ~ 62858786 (-)
G1474358 NA non-coding upstream 12711 62952562 ~ 62952813 (-)
G1474389 NA non-coding upstream 97680 63037531 ~ 63037780 (-)
G1474393 NA non-coding upstream 105676 63045527 ~ 63045759 (-)
G1473866 NA other downstream 204860 62730153 ~ 62730503 (-)
ccdc174 NA other downstream 684725 62246379 ~ 62250654 (-)
G1471564 NA other downstream 2296028 60638180 ~ 60639335 (-)
G1471219 srgap3 other downstream 2558771 60375633 ~ 60376864 (-)
LOC110494257 LOC106565586 other downstream 2828176 60104033 ~ 60110249 (-)
G1474395 NA other upstream 108788 63048639 ~ 63100752 (-)
G1474425 LOC106565679 other upstream 193974 63133825 ~ 63145087 (-)
LOC110494346 LOC106565668 other upstream 467054 63403851 ~ 63409818 (-)
G1474741 LOC100136012 other upstream 570265 63510116 ~ 63510543 (-)
mrpl20 mrpl20 other upstream 1155256 64094912 ~ 64097564 (-)

Expression


Co-expression Network