Gene
RNA
| Item | Value |
|---|---|
| gene id | smarcc2 |
| gene name | LOC106583239 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 62971037 ~ 62984902 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| SWI/SNF complex subunit SMARCC2-like isoform X5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036950414.1 | False | 6586 | mRNA | 0.48 | 25 | 62971037 | 62984418 |
| XM_021569291.2 | False | 6553 | mRNA | 0.48 | 25 | 62971037 | 62984902 |
| XM_021569292.2 | False | 6550 | mRNA | 0.48 | 25 | 62971037 | 62984902 |
| XM_021569293.2 | False | 6547 | mRNA | 0.48 | 25 | 62971037 | 62984902 |
| XM_021569294.2 | False | 6535 | mRNA | 0.48 | 25 | 62971037 | 62984902 |
| XM_036950412.1 | False | 6547 | mRNA | 0.48 | 25 | 62971037 | 62984902 |
| XM_036950413.1 | False | 6529 | mRNA | 0.48 | 25 | 62971037 | 62984902 |
| XM_036950415.1 | False | 6526 | mRNA | 0.48 | 25 | 62971037 | 62984902 |
| TU1686042 | True | 2854 | lncRNA | 0.39 | 2 | 62971573 | 62975049 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110493237 | endou | coding | downstream | 20586 | 62941748 ~ 62950451 (-) |
| LOC110494326 | LOC106565520 | coding | downstream | 31186 | 62935363 ~ 62939851 (-) |
| LOC110494325 | LOC106565522 | coding | downstream | 52865 | 62848969 ~ 62918172 (-) |
| LOC110494324 | gpr84 | coding | downstream | 125892 | 62840276 ~ 62845145 (-) |
| LOC110494320 | LOC106565528 | coding | downstream | 275971 | 62669215 ~ 62695066 (-) |
| LOC110494331 | LOC106565516 | coding | upstream | 5954 | 62990855 ~ 63022358 (-) |
| LOC110494336 | LOC106565676 | coding | upstream | 216534 | 63201436 ~ 63210497 (-) |
| LOC110494343 | LOC106565671 | coding | upstream | 286883 | 63271785 ~ 63352919 (-) |
| LOC110494345 | LOC106565669 | coding | upstream | 388078 | 63372980 ~ 63396065 (-) |
| LOC110494346 | LOC106565668 | coding | upstream | 418949 | 63403851 ~ 63409818 (-) |
| G1474358 | NA | non-coding | downstream | 18224 | 62952562 ~ 62952813 (-) |
| G1474349 | NA | non-coding | downstream | 42186 | 62928616 ~ 62928851 (-) |
| G1474334 | NA | non-coding | downstream | 69189 | 62901628 ~ 62901848 (-) |
| G1474301 | NA | non-coding | downstream | 107589 | 62863235 ~ 62863448 (-) |
| G1474300 | NA | non-coding | downstream | 110522 | 62860153 ~ 62860515 (-) |
| G1474389 | NA | non-coding | upstream | 52629 | 63037531 ~ 63037780 (-) |
| G1474393 | NA | non-coding | upstream | 60625 | 63045527 ~ 63045759 (-) |
| G1474415 | NA | non-coding | upstream | 108025 | 63092927 ~ 63166422 (-) |
| G1474489 | espl1 | non-coding | upstream | 201417 | 63186319 ~ 63188421 (-) |
| G1473866 | NA | other | downstream | 240534 | 62730153 ~ 62730503 (-) |
| ccdc174 | NA | other | downstream | 720399 | 62246379 ~ 62250654 (-) |
| G1471564 | NA | other | downstream | 2331702 | 60638180 ~ 60639335 (-) |
| G1471219 | srgap3 | other | downstream | 2594445 | 60375633 ~ 60376864 (-) |
| LOC110494257 | LOC106565586 | other | downstream | 2863850 | 60104033 ~ 60110249 (-) |
| G1474395 | NA | other | upstream | 63737 | 63048639 ~ 63100752 (-) |
| G1474425 | LOC106565679 | other | upstream | 148923 | 63133825 ~ 63145087 (-) |
| G1474741 | LOC100136012 | other | upstream | 525214 | 63510116 ~ 63510543 (-) |
| mrpl20 | mrpl20 | other | upstream | 1110205 | 64094912 ~ 64097564 (-) |
