pfkmb (LOC106565515)


Basic Information

Item Value
gene id pfkmb
gene name LOC106565515
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63104595 ~ 63121550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569297.2
GTCCCACTGTCCCATCCAGTCACTTTCCCAGTCAGCCAAGcagggagagtgaggggagaggagagagagtgacattcTACTGCACTATACCATACACAGCAGGGCTACCAGGATCAAGGCTAATTCTTATCTGCTGtcttttccttccttccctttTCTGGTCACAGGCAGTTCCAGGACCATGGCACACCCTAAAGACCACAGCAAGATGGGCTTCGGCCGCTCCATCGCCGTGCTGACCTCTGGAGGCGATGCCCAGGGTATGAATGCTGCTGTGAGGGCCACAGTCAGAGTGGGCATCTACACTGGGGCCAAAGTCTACTTCGTTCATGAGGGTTACCAGGGTTTGGTGGATGGAGGTGACAATATCAAACCTGCCACCTGGGAGAGTGTGTCTATGATGCTGCAGCTGGGTGGCACTGTGATTGGCAGTGCCCGCTGTATGGACTTCAAAGAGAAGTGGGGGCGTCTGAAGGCCGCCTGCAACTTGGTCAAACTGGGCATCACCAACCTGTGTGTAATCGGTGGTGACGGTAGCTTGACTGGTGCTAACCAGTTCCGTACAGAGTGGAGCGAGCTGCTGGCTGACCTGATCAAACAGGGTAAGATCACGGCGGAGGAGGCAAAGCGTTCTTCTCACCTCAACATCGTGGGCATGGTGGGCTCTATAGACAACGACTTCTGTGGCACTGACATGACCATTGGCACTGACTCCGCCCTGCACCGCATCATAGAGGTGGTGGACGCCATAACAACTACTGCACagagTCACCAGAGGACCTTTATCCTGGAGGTGATGGGCAGACACTGCGGCTACCTGGCCCTGGTGACTGCTCTGGCCTGCGGTGCTGACTGGGTGTTCATCCCAGAGATGCCCCCAGAGGACAACTGGGAGGAGCATCTGTGCAAAAGACTGATTGCGCAAAGGGAGCGTGGTTCTCGTCTGAACGTCATCATCATGGCAGAGGGAGCCCAGGACCGTAAGCAAAAACCCATCACCTGTGACCAAGTCAAAAATCTGGTATCCAAGAAACTTGGCTTCGACACCCGTTCTACCATCCTGGGACACGTACAGAGAGGTGGCACCCCCTCTGCTTTCGACAggatcctgGGTAGCAGGATGGGTGTGGAGGCTGTGATGGCTCTGTTGGAGGCCACCCCAGAAACTCCAGCCTGTGTTGTCAGTCTTTCTGGGAACATGGCCATCAGGCTGCCGCTCATGGAGTGTGTCCAAGTTaCTAAAGATGTGACCGTAGCCATGGCTGAGGGGAGATTTGAAGATGCTGTGAATCTCAGGGGAAAGAGCTTTCAGAATAACTGGAACACATACAAAATGCTGGCTCACGTGAACCCCCCAGAAGTGAAGAGCAACATCAATATTGCCATTGTAAATGTGGGCGCCCCCTGTGCTGGGATGAATGCAGCAGTGCGTTCAGCTGTCAGGGCTGGTCTCATCCAGGGACACCAGATGCTGGCTATACACGATGGCTTTGATGGCCTGGCTAACGGACAGATTGAGCCTATCACTTGGGCTCAAGTGGGTGGATGGACTGGGAAGGGAGGGTCCAATCTCGGTACCAAGAGAAACCTGCCAGGTAAAAACATTGAGCAAATCAGCCTGAACATTGCCAAGTTCAACATTCATTCTCTGATCATCATTGGAGGCTTTGAGGCGTATCTGGGTGGTCTGGAGCTGGTAACAGCCAGGGAGAAGTACGAGGAGCTGTGTATCCCCATGGTGGTCATTCCCGCCACCGTCTCCAACAATGTTCCCGGATCAGACTTCAGCATCGGCGCTGACACCGCCCTCAACACCATCACCATGaCTTGCGACAGGATCAAGCAGTCTGCTGCTGGCACCAAGAGAAGAGTGTTCATCATTGAGACCATGGGGGGATACTGCGGCTACCTGGCAACCATGGCTGGCTTGTCATCTGGGGCTGACGCTGCCTACATTTATGAAGAGCCTTTCCATATCCATGACCTGGAGCTGAACGTGGTGCATCTGATAGAAAAGATGAAGACCTCCGTGAAGAGAGGTCTCATTCTCAGGAACTCTAATGCCAATGACAACTACACCACACAGTTCCTCTACAACCTGTACTCAGAGGAGGGCAAGGGCACGTTCGACTGCAGGATGAACATCCTGGGACACATGCAACAGGGTGGAACCCCCACCCCCTTCGACAGGAATTTTGGCACCAAGATGGGAGCCAAGTCTGTCCTGTGGCTGACTGACAAGCTGAAGGAGTGCTACAGACACGGTCGTATCTTTGCTAACACACCAGATTCTGCCTGTGTGCTGGGCATGAAAAGGCGATCCCTGATCTTCCAACCCCTGACTTCCCTCAAGGAAGACACTGACTTTGAGCACCGTATCCCAAAGACTGAGTGGTGGCTGAAGCTGAGGCCCATTCTGAAGATCCTGGCCAGGTATGAAGCTGTGGAAATAGACACCTCTGAGGTGGCTGCCATGGAGCACATCATCAAGAAGACAGGAGAAATCAAGGGGGGCAAAATTTAAACAAaccaaataaacacacacaacctcacataaacacatacatacacacccttAGTCTTGCACCTAGACCCGCCCGCACCTATGAGAAGAAAGGAACCTGAGGATCTGTCTTTTTCAaccatctatttcctgtgtttgaggggtgcAAAATCCACTCGTCACTTAAATCTGGCTGGATGGATTGCTTTCATTTTAATCCTGTGACTCTTTCATACTCTTGCTTGTGTCTGTCGTTTTTACCCGTTAACGTTACGACCGTGGAAATgtttgtaatgacctgtcaaacacatCCCGGTAATGGCTGAAAGGGGCTCAATGGAAAACATTGTATTTCCGTTGTATCTATAAGAACGCTAAACTTTGTCTGAGATTAAACGCATAGTCTCGACACTTGCATcacaagaaagagaagaaagatgaCGTTATTTGATGGGTGTACATTTTGTGCGGCGCTGATAACAGTTAGAATTGAATTgaatacatttgaaatgtttacaaaagaGATGCTCTAAAATGAAAGCAATTTCCGAAAAGGAACACTCGGATTATAGTAATACTATGTCTGATCTCGCAAACGATGTAAAGTATGTATCATCAGGTGTCATCTACTCTaagacatattgacatttgaCAATAAATGTAATACCTAATTTCCCACCAAAA

Function

NR:

description
ATP-dependent 6-phosphofructokinase, muscle type-like

GO: NA

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569297.2 True 3187 mRNA 0.50 22 63104595 63121550

Neighbor

gene id symbol gene type direction distance location
myl6 LOC106565518 coding upstream 136051 62960089 ~ 62968544 (+)
tsfm LOC106565519 coding upstream 145626 62956724 ~ 62958969 (+)
stat2 stat2 coding upstream 264675 62826568 ~ 62839920 (+)
LOC110494322 LOC106565525 coding upstream 292371 62807657 ~ 62812224 (+)
c1galt1b LOC106565526 coding upstream 330154 62763482 ~ 62774441 (+)
itgb7 LOC106583060 coding downstream 3338 63124888 ~ 63141041 (+)
espl1 espl1 coding downstream 37513 63159063 ~ 63188421 (+)
pfdn5 pfdn5 coding downstream 66945 63188495 ~ 63194667 (+)
LOC110494337 LOC106565677 coding downstream 74529 63196079 ~ 63201204 (+)
LOC110494339 NA coding downstream 97639 63219189 ~ 63226560 (+)
G1474055 NA non-coding upstream 68863 63035341 ~ 63035732 (+)
G1474026 NA non-coding upstream 122206 62981211 ~ 62982389 (+)
G1474024 smarcc2 non-coding upstream 124797 62979400 ~ 62979798 (+)
G1474022 NA non-coding upstream 130201 62971531 ~ 62974394 (+)
G1474003 NA non-coding upstream 164714 62937284 ~ 62939881 (+)
G1474113 NA non-coding downstream 12213 63133763 ~ 63134241 (+)
G1474175 NA non-coding downstream 123461 63245011 ~ 63245267 (+)
G1474176 NA non-coding downstream 123823 63245373 ~ 63245598 (+)
G1473177 NA other upstream 393459 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 405780 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1547557 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2105532 60972478 ~ 60999063 (+)
G1470607 NA other upstream 3000588 60101892 ~ 60104007 (+)
G1474159 NA other downstream 95398 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 536894 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 562540 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1441824 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1486704 64608194 ~ 64625111 (+)

Expression


Co-expression Network