itgb7 (LOC106583060)


Basic Information

Item Value
gene id itgb7
gene name LOC106583060
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63124888 ~ 63141041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569298.2
tgactttatgaccaaaatgatactatttacactttgtagtacaTGCTGACACTAAAATAAATGTTtgtgactcatatcgatgccacatagacCGTTTTCAAAGCAAGAAGTTGCTTATTACGTTCAGTTGCTCTTAAAGCATGGTAAAATGCCAGTGCCAGCCAAATACACGTTTGGGATGGAGACTTAGCTACAGGAAAAGAAGACCCTCATCCGCTCGGTCTATCGCTCACTCCATTTATATCCTCAGGCAATGGTTGGGATCTTTATATTAGGGACCTTTCTCTTGTACTGTGTGGGACAGAACCAAATTCAAGGGGTCCCCCAAGGATGTGTGTCCCAGCCCTCATGTTCAGCTTGCCTGAGGAGCCCTGGATGTGCCTGGTGCAAACACAAGGACTTCCTGAAGTCTGGAGAGTCCAGTGAGCGGAGGTGTGACACTGCTGAGTCTCTGAGGACCAGGCGTTGTGAGCAGATGGACATCATCAACCCCCGATTAGATCCAGTCTTTCTGAAGAATAATGATCTCAGCAGCAACTCAGACAATGTGGTCCAGCTTAAGCCACAAAACCTCCTCTTCAAACTCAGAGTCGGAGTCCCTCAGACCTTCAATGTCTCATTCAAGAGAGCTGAGGGCTACCCCATAGACCTGTACTACCTGATGGACCTGTCCTTCTCCATGAAGGACGACCTGGACACCATCAAGAACCTAGGCCAGGACATCCTCTCTGCACTGAAAAAAGTCACCCAGAAGGTCCGCATTGGCTTCGGCTCATTTGTAGACAAGGTGGCTCTGCCATACGTCAGCCAGGTGAAGGCCAAGAAGAATAACCCCTGTCCCAACCGCCTGAACATCTGTCAACCTGCCTTCAGCTTCCAAAATATTCTGAGACTCACAGAAGACGTGGATGAGTTCAAGACCAGGGTCAGCGACCAGATCATCTCTGGAAACCTGGACTCCCCCGAGGCAGGCTTTGACGCAATCATGCAGGCAGCTGTCTGCCAGaGTGTGATTGGTTGGAACAATGTCACCCGGATCCTGGTCTACACATCAGATGACACCTTCCATATTGCCGGGGATGGCAGGCTGGCTGGTATATTCGAGCCTCATGACGGCATGTGCCATCTCAATGGCACTGGCTTCTACGATGGCACTAAATATGACTACCCATCGGTTGGCCAGCTTGCCAGGGTCCTGGCAGCCAATAACATCCAGCTCATCTTTGCTGTCACCGAGGACAGTGTTGCTGCCTACAAGGCATTGAGTAAACTAATCCCTCAGTCAGTGGTGGGGGTCCTGAAGAACGACTCCAGCAACGTGGTCCTGCTCATCTCAGAGGCCTACAGTAACCTGTCCTCCACCATCTTACTGGAGCACCATGAAGCTCCCTCAGATCTGGACGTGACCTACAGATCCCACTGCACCCCTGAAAAAGGGGACAACACCCATTGGCAGAGGAGGGGCGAGTGCATGAACGTCAAGCTCAACCAGCAGGTCAACTTCACGGTAAGCCTGAACATTTCAACATGTCTAAAGGAGAAGCAGACGTTTTCCCTAAAACTGCAGGGCATCAGCGAGACCCTGAAGGTCTCTGTGGAAaccctgtgtgactgtgactgccaAGACAGAGAAGAGCAGTCCTCACACTGCAATGAAATTGGAACGCTCACCTGCGGCATCTGCAGCTGTGATGAGGGTCACCTGGGTCAGAGGTGTGAGTGTGAGCGGCCTAAGGACATGACCTCTGCCGACTCTATGGCCGCAACATGTCGCCAAGACAACTCCTCGCAGCTGTGCAGCGGGCATGGGAGCTGTGAGTGTGGCATGTGTATGTGTCAGGGCACCCACCGCGGCAATTTTTGCCAATGTGATGACAACAGCTGTGCCCGCCACAACAACATGCTCTGCGGTGGTAATGGGCAGTGTGAATGTGGAACATGTAAGTGTAATGCCAATTACACAGGCTCTGCATGTGACTGTTCCACCCTCACCGACCAGTGCAGGACTGTTGGGAAGCTGTGCAATGGCCAGGGAACATGCCAGTGTAACCAGTGCCAGTGCAACAAAGACTTCTTTGGCATAAACTGCTCAAAGATTGCTAACGCATGCCCAAAATTCCTGGACTGTGTGACATGTGAATTGGACAATAAAAAGATTAGCGGCCTAAAGAGTAACTGCAGCCAACTCTGTGGCTCAGTCAAGCTCACTTGGATGAAGGGACCCCAGGAGTTCCCCTGCAGTAAAGATACCATCTCCTACAAAGTGGAGCTGTTGCCTGATGGCAACATCCTGATCTTCTACGCAGATCTGCCTCGCTCTATTGACAAGACTTACGTGATCATCGGCAGCTCTGTGTCCAGCATCATCTTCATCGGCATCGCAGTGATCCTCATCAGCAGGCTTATGCTAGAGCTCCACTACCGGAGAGAGTATGACAGCTTCCTCAAAGCAAAGGAGGCCGAAGTCTGGCAAGATATGAAAAATCCCTTGTTCCAGGATGCCACGACCGTGGTCATGAACCCCATGCACGTTCAAGAGGACTGATCCAAACCATTAGACTCTAAAGCCAACAAACACTTTCATTCCAGAAAACCTGTGATCTACTGTAATAAGTGAAAGCCAGACCATACTTTATGCCGATCATAACTTCAGGGAACCGCAAGAACCGCCTGTTGCTAAGAGGATCAAAGACTTTGTCATGAGAACATTACATTCTATTtccctgtatttcaaggccaacacGTATTTCAGATATGATTTGCAGCACGTTTATTCCCATACTCACTTATTGGTTCTCTTCAATTTGATTGCTTCCTCTTGTTGTACAGGAGTAGTAGTGAGaccactccactctctctcaacTTTCAGTCTTTTTCCTCATGATGAAGTCCCCCATCTCCTTatgtcctccttctcctctgcattTGTCTGTTTATTTAAACATTTGAGAGTTAAAATGTTCTGAAGTTGGTATGAATTATTAAGTCTTGTGAAGGGTCATTCGTTTTTAGTCTGTGCATTTAGTTTGTGTTTATTATATTCCGTATTTCTTAATGAATTATTTTCGAATTATTATTATCAGCTGAATCATATTTCAAATGATTCTCTGTACAGTGTATTAATTAAGTAGGCCTATGTGAGCACTGTGTGATTGAAATGATATAGTACCGTTTTTAATTATATCAATTATAATAAAGTAATTTGTAGTGTAATGAGCAGGCAATAAAGAAGGGAAAAACATGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06590 ITGB7; integrin beta 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569298.2 True 3245 mRNA 0.47 16 63124888 63141041

Neighbor

gene id symbol gene type direction distance location
pfkmb LOC106565515 coding upstream 3338 63104595 ~ 63121550 (+)
myl6 LOC106565518 coding upstream 156344 62960089 ~ 62968544 (+)
tsfm LOC106565519 coding upstream 165919 62956724 ~ 62958969 (+)
stat2 stat2 coding upstream 284968 62826568 ~ 62839920 (+)
LOC110494322 LOC106565525 coding upstream 312664 62807657 ~ 62812224 (+)
espl1 espl1 coding downstream 18022 63159063 ~ 63188421 (+)
pfdn5 pfdn5 coding downstream 47454 63188495 ~ 63194667 (+)
LOC110494337 LOC106565677 coding downstream 55038 63196079 ~ 63201204 (+)
LOC110494339 NA coding downstream 78148 63219189 ~ 63226560 (+)
LOC110494340 LOC106565674 coding downstream 91356 63232397 ~ 63238751 (+)
G1474055 NA non-coding upstream 89156 63035341 ~ 63035732 (+)
G1474026 NA non-coding upstream 142499 62981211 ~ 62982389 (+)
G1474024 smarcc2 non-coding upstream 145090 62979400 ~ 62979798 (+)
G1474022 NA non-coding upstream 150494 62971531 ~ 62974394 (+)
G1474003 NA non-coding upstream 185007 62937284 ~ 62939881 (+)
G1474175 NA non-coding downstream 103970 63245011 ~ 63245267 (+)
G1474176 NA non-coding downstream 104332 63245373 ~ 63245598 (+)
G1474181 NA non-coding downstream 107790 63248831 ~ 63249046 (+)
G1473177 NA other upstream 413752 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 426073 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1567850 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2125825 60972478 ~ 60999063 (+)
G1470607 NA other upstream 3020881 60101892 ~ 60104007 (+)
G1474159 NA other downstream 75907 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 517403 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 543049 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1422333 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1467213 64608194 ~ 64625111 (+)

Expression


Co-expression Network