pfdn5 (pfdn5)


Basic Information

Item Value
gene id pfdn5
gene name pfdn5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63188495 ~ 63194667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569304.2
CCTTTGCAATGGAAAGGGCGTTTTCTCAACCTGGAAATACTTGCACTGGAAGGGTCATTTCTCACATTTTCTAACATGGCGGTGAATCTGACAGAGCTTTCTCTTCCTCAGTTGGAGGGACTAAAGACTCAACTTGAGCAGGAGACGGAGTTTTTGACCTCTTCTATAGGTCAGCTCAAAGTTGTCCAGACGAAATATGTAGAAGCTAAGGACAGTTTAAGTGTCCTCAACAAAAACAATGCAGGAAAAGAATTGCTGGTGCCCCTCACAAGCTCTATGTACGTCCCTGGAACACTTAATGACGTGGAACATGTCTTAGTGGATGTGGGGACAGGATACTACGTTGAAAAGAATGTCAATGACACAAAGGAGTTTTTCAAGCGCAAAATAGACTTCCTCACGAAGCAGATAGAGAAGATTCAGCCGGCTCTGCAGGAGAAATATGGCATGaaacaagCTGTGATTGAGGTGATGAACATTAAGATCCAACAGCTTCAGAGTCAACAGGCGTCACAGTCGGGGACCACCAAAGCCTAACCAGTTGAAGATGGGGCTTACACCAGTCTGCTTTGGTTCTTCATGATTGGGGGGGTTGAGTTACTGAAAACAAATTCTGCATGAACTGTTAATGGGTTGAGCCAAGATAAAACTGGGCGAAAGACACAAATGTACTCTACAACGCAGAACCTAAATTTGTGCCGACACTGCAATGGTGAAGGGCAGCCAATGTTAATGTTGTAACAAACTCTCCTAGAAAATGTGAGTCTTTATTTTTTGATTCAGTTTATGTTAATTAGTCGGGTTGCAAAAATATAACTGAAATGTAGGTATTTATTTGTGTACCTTATGTTCTTTGTAGCAGTTTTTGATGCTTGTGTTGCTATAGCAATAGTTAATTTGAATAATAAAATAGGCTCCTCTGGT

Function

symbol description
pfdn5 Predicted to enable unfolded protein binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN5 (prefoldin subunit 5).

NR:

description
prefoldin subunit 5

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04797 pfdA, PFDN5; prefoldin alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569304.2 True 924 mRNA 0.42 6 63188495 63194667

Neighbor

gene id symbol gene type direction distance location
espl1 espl1 coding upstream 74 63159063 ~ 63188421 (+)
itgb7 LOC106583060 coding upstream 47454 63124888 ~ 63141041 (+)
pfkmb LOC106565515 coding upstream 66945 63104595 ~ 63121550 (+)
myl6 LOC106565518 coding upstream 219951 62960089 ~ 62968544 (+)
tsfm LOC106565519 coding upstream 229526 62956724 ~ 62958969 (+)
LOC110494337 LOC106565677 coding downstream 1412 63196079 ~ 63201204 (+)
LOC110494339 NA coding downstream 24522 63219189 ~ 63226560 (+)
LOC110494340 LOC106565674 coding downstream 37730 63232397 ~ 63238751 (+)
LOC110494341 LOC106565672 coding downstream 54897 63249564 ~ 63265513 (+)
LOC110494344 LOC106583073 coding downstream 162005 63356672 ~ 63372554 (+)
G1474113 NA non-coding upstream 54254 63133763 ~ 63134241 (+)
G1474055 NA non-coding upstream 152763 63035341 ~ 63035732 (+)
G1474026 NA non-coding upstream 206106 62981211 ~ 62982389 (+)
G1474024 smarcc2 non-coding upstream 208697 62979400 ~ 62979798 (+)
G1474022 NA non-coding upstream 214101 62971531 ~ 62974394 (+)
G1474175 NA non-coding downstream 50344 63245011 ~ 63245267 (+)
G1474176 NA non-coding downstream 50706 63245373 ~ 63245598 (+)
G1474181 NA non-coding downstream 54164 63248831 ~ 63249046 (+)
G1473177 NA other upstream 477359 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 489680 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1631457 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2189432 60972478 ~ 60999063 (+)
G1470607 NA other upstream 3084488 60101892 ~ 60104007 (+)
G1474159 NA other downstream 22281 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 463777 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 489423 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1368707 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1413587 64608194 ~ 64625111 (+)

Expression


Co-expression Network