LOC110494337 (LOC106565677)


Basic Information

Item Value
gene id LOC110494337
gene name LOC106565677
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63196079 ~ 63201204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569303.2
GATTATTTTTCATTTTAGGATTTGAGCAAATAGTAAAGACACGTTTCATGTTCCAGCAGTGTACCGCAAAATGGAACATGGTGCGCGTTCTGCAAGACGCACCGTTTTAGAACGTTCAGATGGAAATAggctatgtagaacaaacatgcctctgacGTCGAATAATAACGAATCACATTCGGCTCGATTCGTGGCTTTATCTGAAACGTTTCGTAACTGAACATTGCCCTGGAAGCGGAAGTGTGCGGTCCACGTGGTGCGATGTGCTGTTTTTGAGTTCATTCATTTCTGGCATGAACAATGGAGCAATGAAAAATAATATAATTCAAGACTAGAAGTTAAAAACCTAGTCTAACCTAAATCAGGTAGCTAGTTTATTAGTCCGTGTTTTCTTGACTATCTGGTGTAACACATGTAAGTTAATACATTTATTGTATAAAATATCAAATAATTTGCATTGCAAACACTTAGCACGCTAGCTTGAGTGAATCTGACTCAGAGTTGCCtgatgaaaagtacagtaaatacCAATATGATCAAGGAAAACCGATGGAACATACCCCCAAATGCCCCTGCGTGCATGGAGAAGCATTTGGACTCGGTGCAGTACAGGGCAGATGGCACCCTGTTGCTGGGGGCCTCCAGTCTGACTGGCAGATGCTGGCTTGGCTCCATCTGGGTCTACAGTGACCCCAAGCAGTCTCCCAACGAGGGCTTCTGCAAGGCTGGTGTGCAGACAGAGGCTGGGGTCACAGAGGCAAAGTGGGTTTCAGAGAGGGGCGTCCTAGTTGCATCTGACTCTGGTGCTATTGAGCTGTGGGAGCTAGCGGAGGATGAGAGTCTGCTGGTGAATCGGTTCACTAAACTCGAACATGATCACATCGTCACCAGCGTGAGCCCTGCTGGGTCAAACCACGCTGTCAGCGGCAGTATGGACTGCCGAATCAAAGTCTGGGACCTTAGTCAGGGGGAAGTGGTCAGCACGTATAACGCTCACTCTAAGCCAGTCACTTGTGTGTCCTGCAATCCATCCGATGACTCCCTCTTCCTCTCATGTGGCCAGGATGGCCGTCTGTTGCTTTGGGACAGGAGGAAACCCACCAAACCAGCTTCTAGATTAGAGATAGAGCCCAGCTGTTGCCCTACCTCAGTGGCCTGGCATCCCCACCACAGGACCACAATTGCCTACGGTGACGAGCTAGGACGCGTGACTCTGAAAGACTTTCAGGGCACAGAGCCTGCCCAGACGCAGAGCACCCACAGCCGTAGGGTCTCCAGCCTAGCCTTCTCCTCACACAGTGCCCCCTTGCTAGCCTCCATCAGTGATGACTGCTCGGTTGCTGTGATGAACTCAGAGCTTAAGGAAACGTTGAGAGACAGGAGGCACCAGGACTTTGTTCGGGGTGTCTGCTGGGCCCCTGGTGGTTCTGACACACTGACCACCGTGGGCTGGGACCACCAGGTCCTCCACCACATCACGGGACAGGATGGACCTGCCACTGGTGACTCCACGTCCCCACCGTAGACCCACCACCCAGCCTGGGTCAGGGGATAGGGgaaaggtggtggtggtggtggaagtaTGGGGTTTTgtagaaggggaggggggggttgaTGGGTTGGCATGAGGGTAGAAGTTGTCAATACCCACCACACTGGAACAGAGAACAGGGCAGTGTACTGATGGTTTCCCCCAATCCTAGTCTCAAAGTACCCATGTTGATGCAGGTTTTCTTTCCAACGGATTTATAAATTAATTCTGTGTTAAGGTAGAGTCAGCAATGTACCAAGTCAATCAGGACGTTTTCTAGCACCAACTAAGAGTAAAGCTAAACATTTCATCTTTTTTCGTCCTGCAGCTATCCCGTTGAGGCAGCACATGCGCATTTGTCTTGTGGCAGCAAAGTCTTGCGCTGCAGATTTGCGGTTCATCCTGTTGCTCGTAGCGATGTCATACGCCGAGTCTCAGTTCTAGGTTTATTAGCCACTTGTAGGACATTACCTGTGGTGTGCAGTTGTTTGTTCTTGGGGAAATTAACAAAGTGATGGATTGGGGTAGTTATCGTGTGGGTTACTTGAAGACTTGGGTTTGGGAATGCTGCCAAAGGAAATGGGAATCTTTAATCTAACGAACCCATCTGATCACGTTTATAGTCCAACCTCATGTAACCTTTGTTTACCCACCCAGGGTGCTGTATTACGTGGCATGTAAGCCAGTCTGAGAAGTGTGAGCCACTGGCTCTTTGGATAACAAGATTATGTGGGTGAATTGGATTTACTAGTCAATTATACAGTGGCGCATTCTGATATAACTGGTCTGGAATAACCTGGTTCAAGTTGTGACCACACAATCAATGGCATGAGCAATTTGTTTTCCAAATGAATGAAGAGTTTATGTACATTTGAAAAGTCTGTAAATCTTCACTTCAGGGCTTGTTTGGACCAGTGCTTCCATTCCATATTCTCCCTTGTCCATGGCAGTTTCTTTTGTTTAATGTTCTCATTTCTCTCACATGTACCAGAAACAGAAAGCACTGTCCTTAACGGTTTTCTTCCACACAAAGGCGTTCCTTGgattgtatgtacagtacatgtctgGTGGTGCTTTTTGGAAGTCGGAGGAGTACAACTTAACTGACATAATCAACTTTTTCCATTCAATAAAGTTTGTCTGAATACTG
>TU1685875
GCATGAGGGTAGAAGTTGTCAATACCCACCACACTGGAACAGAGAACAGGGCAGTGTACTGATGGTTTCCCCCAATCCTAGTCTCAAAGTACCCATGTTGATGCAGGTTTTCTTTCCAACGGATTTATAAATTAATTCTGTGTTAAGGTAGAGTCAGCAATGTACCAAGTCAATCAGGACGTTTTCTAGCACCAACTAAGAGTAAAGCTAAACATTTCATCTTTTTTCGTCCTGCAGCTATCCCGTTGAGGCAGCACATGCGCATTTGTCTTGTGGCAGCAAAGTCTTGCGCTGCAGATTTGCGGTTCATCCTGTTGCTCGTAGCGATGTCATACGCCGAGTCTCAGTTCTAGGTTTATTAGCCACTTGTAGGACATTACCTGTGGTGTGCAGTTGTTTGTTCTTGGGGAAATTAACAAAGTGATGGATTGGGGTAGTTATCGTGTGGGTTACTTGAAGACTTGGGTTTGGGAATGCTGCCAAAGGAAATGGGAATCTTTAATCTAACGAACCCATCTGATCACGTTTATAGTCCAACCTCATGTAACCTTTGTTTACCCACCCAGGGTGCTGTATTACGTGGCATGTAAGCCAGTCTGAGAAGTGTGAGCCACTGGCTCTTTGGATAACAAGATTATGTGGGTGAATTGGATTTACTAGTCAATTATACAGTGGCGCATTCTGATATAACTGGTCTGGAATAACCTGGTTCAAGTTGTGACCACACAATCAATGGCATGAGCAATTTGTTTTCCAAATGAATGAAGAGTTTATGTACATTTGAAAAGTCTGTAAATCTTCACTTCAGGGCTTGTTTGGACCAGTGCTTCCATTCCATATTCTCCCTTGTCCATGGCAGTTTCTTTTGTTTAATGTTCTCATTTCTCTCACATGTACCAGAAACAGAAAGCACTGTCCTTAACGGTTTTCTTCCACACAAAGGCGTTCCTTGgattgtatgtacagtacatgtctgGTGGTGCTTTTTGGAAGTCGGAGGAGTACAACTTAACTGACATAATCAACTTTTTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569303.2 False 2681 mRNA 0.48 10 63196079 63201204
TU1685875 True 1035 lncRNA 0.42 1 63200146 63201180

Neighbor

gene id symbol gene type direction distance location
pfdn5 pfdn5 coding upstream 1412 63188495 ~ 63194667 (+)
espl1 espl1 coding upstream 7658 63159063 ~ 63188421 (+)
itgb7 LOC106583060 coding upstream 55038 63124888 ~ 63141041 (+)
pfkmb LOC106565515 coding upstream 74529 63104595 ~ 63121550 (+)
myl6 LOC106565518 coding upstream 227535 62960089 ~ 62968544 (+)
LOC110494339 NA coding downstream 17985 63219189 ~ 63226560 (+)
LOC110494340 LOC106565674 coding downstream 31193 63232397 ~ 63238751 (+)
LOC110494341 LOC106565672 coding downstream 48360 63249564 ~ 63265513 (+)
LOC110494344 LOC106583073 coding downstream 155468 63356672 ~ 63372554 (+)
LOC110494347 LOC106565667 coding downstream 264897 63466101 ~ 63471249 (+)
G1474113 NA non-coding upstream 61838 63133763 ~ 63134241 (+)
G1474055 NA non-coding upstream 160347 63035341 ~ 63035732 (+)
G1474026 NA non-coding upstream 213690 62981211 ~ 62982389 (+)
G1474024 smarcc2 non-coding upstream 216281 62979400 ~ 62979798 (+)
G1474022 NA non-coding upstream 221685 62971531 ~ 62974394 (+)
G1474175 NA non-coding downstream 43807 63245011 ~ 63245267 (+)
G1474176 NA non-coding downstream 44169 63245373 ~ 63245598 (+)
G1474181 NA non-coding downstream 47627 63248831 ~ 63249046 (+)
G1474199 NA non-coding downstream 153153 63354357 ~ 63354689 (+)
G1473177 NA other upstream 484943 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 497264 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1639041 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2197016 60972478 ~ 60999063 (+)
G1470607 NA other upstream 3092072 60101892 ~ 60104007 (+)
G1474159 NA other downstream 15744 63216948 ~ 63217594 (+)
srsf3b LOC106565658 other downstream 457240 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 482886 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1362170 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1407050 64608194 ~ 64625111 (+)

Expression


Co-expression Network