LOC110494340 (LOC106565674)



Basic Information


Item Value
gene id LOC110494340
gene name LOC106565674
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63232397 ~ 63238751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036950417.1
GGTCACAAGAAGGCTCCACCGAAAGTAAGCTGGGTTTTTTCACCAGCTGGAAAGGTGTGCCGGGTGCCAAGAATGAAACGTCTGTGACGTCACAGCTCTACCTGAGTTTCGGGAAGGGAGTCGAAAAGGGGTGGCCTGAACTAATGGGGACAAGATTATCAGAATTGTTCTCGCATGATAAGAAGTATACAAAGTAGCCTACTTCCTGGTCACGTTCAACTGCAGATTGAAAGCATGGCGGTGACCCCACGGCGTGTTCGGCTCAAGCCCTGGCTAGTGGCCCAGGTGGACAGTGGgctctacccaggtctggtgtggATCGATCGAGACAACAAGCGCTTCAGGGTCCCCTGGAAACACGCTACGCGCCACACCCCCCAGCATGAGGAAGAGAACACAATCTTTAAGGCCTGGGCAGTGGAGACAGGAAAGTTCCAGGAGGGTATTGATGACCCTGACCCTGCCAAGTGGAAAGCCCAGCTCCGCTGTGCCCTCAACAAGAGCAGAGAGTTCAACCTTGTCTACGATGGCACCAAAGAAGTCCCCATGAACCCCCTGAAGATCTACGATGTCTGTGACATCCcacagcccctcagtaacccagGATCCTCAGACTCTGGGTCCTGGACGCCAAATGACTGTGATGAAGATGAACCAGATACTCCAGAGCCCCTTCCTCCTTATCCAACATCCAATGGCACCAGCCCCACTCTAATGTGGTCTCCTCCGGGGTCAGtatcacccctccacccccccagCTGCCCCCCATCAGTTGAAGTGTGGCCCAAAGAGGAGGTTAAGCCGTGGCCAAAAGAGGAGCCTTTGGATGTGGAGATGCAGCCCTCCCCTGAGGAGATGGCGCCCCCTCCTCCACTTGACATGCCTTCCCCTCCCATGCCTGACATGATGTTCGCCTCCCCAGAGATGTGGATCAGCTCCTTGCCCAtgACAGACCTGGAGGTGCAGTTCCAGTACCGGGGTAAGGAGGTGTGTCCAGCCATGACAGTCAGTAATCCCCAGGGCTGCAGGCTGTTTTACGGGGACCTGGGCCCCATGGTCAACCAGGAAGAGCTGTTTGGCCCTATCAGCCTGGAGCAGCTGAGGTTCCCCTCTACCGAGCACATCGCCAACGACAAGCAGAGGGTCTTCACCAACCGCCTGCTGGACGTCATGGACCGAGGCCTCATCCTGGAGGTCAGTGGCCATGACATCTATGCCGTCCGCCTTTGCCAGTGCAAGGTGTACTGGTCAGGCCCCTGTGCACCCAACCCCAATGCACCCAACCTCATAGAGAGGCAGAGGAAGGTTAAGCTGTTCTGTCTGGAGTCGTTTCTCAGCGGTGTAATAGCCCATCAGAGGGGCCAGTCGGCCAGCCTTCCTCAGTTCGACATCAACCTGTGCTTTGGAGAGGAGTGGCCTGACAGCAGACCCAGGGAGAGGAAGCTCATCATGGTGCAGATCATCCCTGTGGTAGCACGTATGATCACTGAAATGTTCTCAGGTGACTGCATGCGCTCCTTCGACAGCGGCAGCGTGCGCCTGCAGATCTCCATCccggacatcaaggacaacatcgTTACCCACCTGAAGCAGCTGTACCGCCTGCTGCAGACCCACCAGGGCCAGGAGGGCTGGCCTCAGGCTCTGCCCCTGGGGGCTGGTATGAGCCTGCCCCAGGCCCTGCACGCCCAGTGAAGCTACCCAGTCCACCATGGCCCTACCAGGCCAGTCAGTCTCATACACAGCTCTGTCTGGACACTGTCTCCTTACTGCTGCCTCTACTGCTGGGTTATGTGAAGACCTGTAGTCAGCAAGCTAGTACTTATGTTTATAGAGGCGTGTTAATCCGAATAGGAAAAGGGATTGCTTCAATTTAGCCTTTCCCCTTTCTTTTGCTATTATGTTCTCTGAAAGGAGCCATGTATATATTGTGGTAAATGCTGCTAAACAGGCACTGTAAGACTACTACTGTGGCAGTCAGTAAAACATGGATAGTGTCTGTCTGCAGTTGTAAAGCCCCGTGGCCTTGTACTCAATATAGGCAGAATTAGAGGAGCATTGGATGGCATTATGGGCAAAAGTCCTGTCAGCTGCAAGGCAACATTGAACATAGTCAATGAGTTACAGGCATAACCCTTGACCCCATGTTACAAAATACCAGTCAGTTATCAAGCTGTGTCCTGGTCCTTGTTGCTCATGTCATTTTGTCTACTACCTGTATTTAACCCATGAAGAATATGTTTAAGTGCTAAAGGtagatatttatatatatttttttcttttggAGAAAAAACATGCAAGTGGTTAATCCATTATGTGAACTTTTATGATACACACTTTAATAGTTATCTTTCCTTTCTATTGGTTATTATACATTTGTATCTCATCATGACTGCTGAGATCCATTCTAACTGTTCCTGCAATATATATCCTATACCCTTTACTGGTTTGTTTATGCTAATACTAGTAGATAAGATCAGGTCAAGGTAGAGGATTCGGTGAACCAAATGGATTGTTTATTTTCTGATAGACCTTATCACCATGTATAGCCTCCATttataattttatggaatttaaACCATATGTTTTGGTCCATGAAATTAGTATAAGTGGTGTCGCTGCACTTTTGAGAGTAAATGGAGTCTTATGCTTAGATAGCATTTCATTTTTCAATAACTTTTATCCTAatgatttgtatatattttttgaaaaacGCCCATAACTAGGCAAGtgatcagattttttttaaatgaagggaATCCGAAATGAAAAAGGGTTTCATTCAAATTGACAGTTATACCTGCAAGTGTTTTATTCACTGGTATTTTGTCAGTTTTACTGTCTAGTTATTAAAGTGGTTGTGTGTTAATATACTGACACCATATGTATTTGATTATTATAGAAGGATGAAACACGTATGCATGAACATGATGCAGTAACCATAAAATGCATTAGAAATACACATTTACTTCAAGATTACATTTTCAATGGATGCTAAATATCCTTCGCTATAATGTTGACTGAGCTATACAGAAAACATTTAAAAGTAAAATGCAATAAACATATTTCCCAAAACCCTCAGAGCAAGTTCTTCAGAG
>XM_021569305.2
GCGGCCGCCTACATTTAGTTAGTTTGCAACCTTGAAATAGTTTAAAGTTCGTAACTAGATGGTTATTAGAAATCATTACTAACAATTTATCCGTGAAAAGTAGCCTATTTTACTGGTATTTCATATGTTGCTCAAATTTACAGTAAGAGCGAGCGAGGGGTTGCAACTAAGCATCAACAAAAGTCAAAGGTTTATCACAACAAAAGCCAGTAAAGTCATTGCTTTACTGTAAATGTCATTTTATGGTTATGGTTTTTGGATTGAAAGCATGGCGGTGACCCCACGGCGTGTTCGGCTCAAGCCCTGGCTAGTGGCCCAGGTGGACAGTGGgctctacccaggtctggtgtggATCGATCGAGACAACAAGCGCTTCAGGGTCCCCTGGAAACACGCTACGCGCCACACCCCCCAGCATGAGGAAGAGAACACAATCTTTAAGGCCTGGGCAGTGGAGACAGGAAAGTTCCAGGAGGGTATTGATGACCCTGACCCTGCCAAGTGGAAAGCCCAGCTCCGCTGTGCCCTCAACAAGAGCAGAGAGTTCAACCTTGTCTACGATGGCACCAAAGAAGTCCCCATGAACCCCCTGAAGATCTACGATGTCTGTGACATCCcacagcccctcagtaacccagGATCCTCAGACTCTGGGTCCTGGACGCCAAATGACTGTGATGAAGATGAACCAGATACTCCAGAGCCCCTTCCTCCTTATCCAACATCCAATGGCACCAGCCCCACTCTAATGTGGTCTCCTCCGGGGTCAGtatcacccctccacccccccagCTGCCCCCCATCAGTTGAAGTGTGGCCCAAAGAGGAGGTTAAGCCGTGGCCAAAAGAGGAGCCTTTGGATGTGGAGATGCAGCCCTCCCCTGAGGAGATGGCGCCCCCTCCTCCACTTGACATGCCTTCCCCTCCCATGCCTGACATGATGTTCGCCTCCCCAGAGATGTGGATCAGCTCCTTGCCCAtgACAGACCTGGAGGTGCAGTTCCAGTACCGGGGTAAGGAGGTGTGTCCAGCCATGACAGTCAGTAATCCCCAGGGCTGCAGGCTGTTTTACGGGGACCTGGGCCCCATGGTCAACCAGGAAGAGCTGTTTGGCCCTATCAGCCTGGAGCAGCTGAGGTTCCCCTCTACCGAGCACATCGCCAACGACAAGCAGAGGGTCTTCACCAACCGCCTGCTGGACGTCATGGACCGAGGCCTCATCCTGGAGGTCAGTGGCCATGACATCTATGCCGTCCGCCTTTGCCAGTGCAAGGTGTACTGGTCAGGCCCCTGTGCACCCAACCCCAATGCACCCAACCTCATAGAGAGGCAGAGGAAGGTTAAGCTGTTCTGTCTGGAGTCGTTTCTCAGCGGTGTAATAGCCCATCAGAGGGGCCAGTCGGCCAGCCTTCCTCAGTTCGACATCAACCTGTGCTTTGGAGAGGAGTGGCCTGACAGCAGACCCAGGGAGAGGAAGCTCATCATGGTGCAGATCATCCCTGTGGTAGCACGTATGATCACTGAAATGTTCTCAGGTGACTGCATGCGCTCCTTCGACAGCGGCAGCGTGCGCCTGCAGATCTCCATCccggacatcaaggacaacatcgTTACCCACCTGAAGCAGCTGTACCGCCTGCTGCAGACCCACCAGGGCCAGGAGGGCTGGCCTCAGGCTCTGCCCCTGGGGGCTGGTATGAGCCTGCCCCAGGCCCTGCACGCCCAGTGAAGCTACCCAGTCCACCATGGCCCTACCAGGCCAGTCAGTCTCATACACAGCTCTGTCTGGACACTGTCTCCTTACTGCTGCCTCTACTGCTGGGTTATGTGAAGACCTGTAGTCAGCAAGCTAGTACTTATGTTTATAGAGGCGTGTTAATCCGAATAGGAAAAGGGATTGCTTCAATTTAGCCTTTCCCCTTTCTTTTGCTATTATGTTCTCTGAAAGGAGCCATGTATATATTGTGGTAAATGCTGCTAAACAGGCACTGTAAGACTACTACTGTGGCAGTCAGTAAAACATGGATAGTGTCTGTCTGCAGTTGTAAAGCCCCGTGGCCTTGTACTCAATATAGGCAGAATTAGAGGAGCATTGGATGGCATTATGGGCAAAAGTCCTGTCAGCTGCAAGGCAACATTGAACATAGTCAATGAGTTACAGGCATAACCCTTGACCCCATGTTACAAAATACCAGTCAGTTATCAAGCTGTGTCCTGGTCCTTGTTGCTCATGTCATTTTGTCTACTACCTGTATTTAACCCATGAAGAATATGTTTAAGTGCTAAAGGtagatatttatatatatttttttcttttggAGAAAAAACATGCAAGTGGTTAATCCATTATGTGAACTTTTATGATACACACTTTAATAGTTATCTTTCCTTTCTATTGGTTATTATACATTTGTATCTCATCATGACTGCTGAGATCCATTCTAACTGTTCCTGCAATATATATCCTATACCCTTTACTGGTTTGTTTATGCTAATACTAGTAGATAAGATCAGGTCAAGGTAGAGGATTCGGTGAACCAAATGGATTGTTTATTTTCTGATAGACCTTATCACCATGTATAGCCTCCATttataattttatggaatttaaACCATATGTTTTGGTCCATGAAATTAGTATAAGTGGTGTCGCTGCACTTTTGAGAGTAAATGGAGTCTTATGCTTAGATAGCATTTCATTTTTCAATAACTTTTATCCTAatgatttgtatatattttttgaaaaacGCCCATAACTAGGCAAGtgatcagattttttttaaatgaagggaATCCGAAATGAAAAAGGGTTTCATTCAAATTGACAGTTATACCTGCAAGTGTTTTATTCACTGGTATTTTGTCAGTTTTACTGTCTAGTTATTAAAGTGGTTGTGTGTTAATATACTGACACCATATGTATTTGATTATTATAGAAGGATGAAACACGTATGCATGAACATGATGCAGTAACCATAAAATGCATTAGAAATACACATTTACTTCAAGATTACATTTTCAATGGATGCTAAATATCCTTCGCTATAATGTTGACTGAGCTATACAGAAAACATTTAAAAGTAAAATGCAATAAACATATTTCCCAAAACCCTCAGAGCAAGTTCTTCAGAG

Function


NR:

description
PREDICTED: interferon regulatory factor 6-like isoform X1

GO: NA

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036950417.1 False 3098 mRNA 0.48 9 63232397 63238751
XM_021569305.2 True 3132 mRNA 0.46 8 63232745 63238751

Neighbor


gene id symbol gene type direction distance location
LOC110494339 NA coding upstream 5837 63219189 ~ 63226560 (+)
LOC110494337 LOC106565677 coding upstream 31193 63196079 ~ 63201204 (+)
pfdn5 pfdn5 coding upstream 37730 63188495 ~ 63194667 (+)
espl1 espl1 coding upstream 43976 63159063 ~ 63188421 (+)
itgb7 LOC106583060 coding upstream 91356 63124888 ~ 63141041 (+)
LOC110494341 LOC106565672 coding downstream 10813 63249564 ~ 63265513 (+)
LOC110494344 LOC106583073 coding downstream 117921 63356672 ~ 63372554 (+)
LOC110494347 LOC106565667 coding downstream 227350 63466101 ~ 63471249 (+)
LOC110494349 LOC106565665 coding downstream 277985 63516736 ~ 63543481 (+)
LOC118940486 NA coding downstream 335809 63574560 ~ 63580589 (+)
G1474113 NA non-coding upstream 98156 63133763 ~ 63134241 (+)
G1474055 NA non-coding upstream 196665 63035341 ~ 63035732 (+)
G1474026 NA non-coding upstream 250008 62981211 ~ 62982389 (+)
G1474175 NA non-coding downstream 6260 63245011 ~ 63245267 (+)
G1474176 NA non-coding downstream 6622 63245373 ~ 63245598 (+)
G1474181 NA non-coding downstream 10080 63248831 ~ 63249046 (+)
G1474199 NA non-coding downstream 115606 63354357 ~ 63354689 (+)
G1474200 NA non-coding downstream 115967 63354718 ~ 63354917 (+)
G1474159 NA other upstream 14803 63216948 ~ 63217594 (+)
G1473177 NA other upstream 521261 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 533582 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1675359 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2233334 60972478 ~ 60999063 (+)
srsf3b LOC106565658 other downstream 419693 63658373 ~ 63663255 (+)
tmcc2 LOC106565656 other downstream 445339 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1324623 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1369503 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1516570 64755321 ~ 64780475 (+)

Expression



Co-expression Network