LOC110494344 (LOC106583073)


Basic Information

Item Value
gene id LOC110494344
gene name LOC106583073
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63356672 ~ 63372554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569315.2
AGAGGACAGCTTCCCTTAGTCCCCAAGCAGTGATtgtctgactgtgtgtcagtATACATCTCCGGTGCCCTCTTCCTCCAGTCACCAACCACGGACTGAGGCCAGGATCCCCTGTTCCCAGCCCccacctctgcctccctctgtcccGGTCTCCCAGTGTACCCCTCAGACGCCGGGAGCGGCCGGCCGCATTTCCGTACCACACAGGATCTTGGCTTGAAAGAGTGATAAAAAAAAGTACAAAATGGGAGCCGGAGGAAGTGTCGAAGACAAGGCATTAGCCGCAAAGTCCAAGGAGCTGGAAAAGCAGCTGGCGGAGGATGCGGACAAAGAATCCAAGACAGTCAAGCTTCTGCTGCTTGGTGCTGGTGAGTCTGGGAAGAGCACAATTGTTAAGCAGATGAAAATTCTCCATCAAGGTGGTTATACCAAAGAAGAACAATTGGAGTTCAGGGCGATCATCTATGGTAACATCCTGCAGTCTGCTCTGGCCATCATCAGAGGCATGGAGATGCTGTCCATTGACTTTGGATCACCAAAAGGAAGTGAAGACGGGCAGAAGCTGTCCAACCTGTCAGACTCCATTGAAGAGGGCTCCATGCCCCCTGAGCTGGCTGATGTCATCAAGAGGCTGTGGAGTGACAGTGGTGTCCAGGCCTCCTTCGAGAGAGCAGCCGAGTATCAGCTCAATGACTCTGCTGGCTACTACCTTGGAGAATTGGACAGAATCACAAAGTCTGATTACCTGCCCAATGAGCAGGACGTGCTGCGTTCTCGAGTCAAGACAACCGGTATCATCGAGGAGCAGTTCTCCTGCAAAGAGCTGCATTTCAGGATGTTTGATGTGGGCGGCCAGCGGTCGGAGAGAAAGAAGTGGATCCATTGTTTCGAGGGTGTAACCTGCATCATCTTCTGCGGAGCCCTCAGTGCTTATGACATGGTGCTCGTAGAGGACGATGAAGTGAACCGTATGCATGAGTCTCTCCACTTGTTCAACAGTATCTGCAACCACAGGTTCTTCGCCACCACCTCCATTGTGCTCTTCCTCAACAAGAAGGATCTTTTTGAAGAGAAGATCAAAAAGGTCCACCTCAGCATCTGCTTCCCAGACTACGATGGCCCCAACACATATGATGATGCCAGTGACTACATCAAGAAGCAGTTTGAGGAGCTGAACATGAAGAAGGGTGTCAAAGAAATCTATTCCCACTTGACCTGCGCCACGGATACAAAGAACGTGGAGATTGTGTTCGGAGCCGTGACAGACATCATTATCAAAGAGAACCTAAAATCTTGCGGTCTGTTCTAAGCAGATACACAAAGAGTTGAGCAGTAGGAACAGAAGGCACAACAGAAGGCTTTGTAATGTCATAAGACTCTTCAATTCTACACTATCCCTTCATTCCTAACTCCCAACACCCTAAATTATGGGTAATGAAGGCAAATACAAAGAAAACAGCCCCTAACTTACTCCAAAGGGAGTCAACACACATGTCCAACAAATCGAACAAAGATGGCAACATGTTCCTCACGGAGACAATGTGGACGATGTCCTTTAGATGGAAATGTGGATAAGAAGTCAGAAGAACAACCGAATGAACACGTTTGATATAGGTACTTTATTAGATATTCTGGGGTTATTTCTGGCTCTTAAATGGTTTGTGTTGAAGAAAGTGTAGAAAGCTGCTCATGGAATCCAATTGATAAACTTATGAAAGGATACATTTTGAAGAGATCCATCTTACTCAACATGGTCAGAGTGAAGTCCTTTCCAATTACACTGTTCTTGCCCAATGATTTTTAATGTTTATATCTAGTTCTGTTTGGATATGCTTACTGTTTCGCACCAGATGTAACACAGTAAAAAGTTATTCAGCTAATTTCAATCAGCGAATTCAAATAGCTGAAATTTAAGAAAAAAGTACCATCAAAACAAGTTAGCAATGTATTTTGTAAATAGGGGACCTTAAACATTAATATTCAAATACGTTATGAAAATGTTCAACATCAGTGACATGTTTAGTGATGTGCATGTATATTCCATTTTGACTACTGACAACTGAACCTGTAACTGACTTGTGAAAGATAAAcattcaaaataaaaatgtatacataGCAACTGCCATTTCTGCATGTCATCattctttgtatttttttttacaaagataTGTGATATGACCTAAAGGTCACACAAAGTTTATTTACTGTTTAAAGGAATACTTCAAAAAAAAATGTGAGGTGAGCGAGCAAATAAAAATATGAACATTTCAACCCCTTTCAACCCCATTTCAACCCCACAAAATTTCAAccccttgtaaaaaaaaaaaaacaacaacattaataCAAACACCTTACCAAGACAGTTTTGCCTTTTTGTATAATGGTTTTGAAATTCACACTCACAGGGACCACAGTTTGAGTCCTGGTCAGGGTCCCCCTCTAATGAACTACATTGATGTTAAGTTTTGTAGCCACATAATGAATGCGACTTGGACTGTTACCATTTAGGTGCAGGATACCTACAATACTATTGAACTAAAATTCTTTAAAGATGAACAAGAGCTCAAGCattagaacatttgaggtgctggtactcagctcagctccggtgagctcctgtCCAAGTCAAGCACATAATCCAAAAGGAAGGCTACAGGTCATCTTTTTTCCTAAAATGACTGTTTGCGATTTACAAATGATTACTTTGATTAACCACGCTTCAACCGAATCGAATACTACAAGGGCAAAGTGAATCATTTAAAATATTAAATTCATATGAATCacaattttaaatgtatttaacctttatttaacgaggcaagtcagttaagaaattattatttacaacgacggcctaccccggccaa
>XM_021569314.2
AGGACAGCTTCCCTTAGTCCCCAAGCAGTGATtgtctgactgtgtgtcagtATACATCTCCGGTGCCCTCTTCCTCCAGTCACCAACCACGGACTGAGGCCAGGATCCCCTGTTCCCAGCCCccacctctgcctccctctgtcccGGTCTCCCAGTGTACCCCTCAGACGCCGGGAGCGGCCGGCCGCATTTCCGTACCACACAGGATCTTGGCTTGAAAGAGTGATAAAAAAAAGTACAAAATGGGAGCCGGAGGAAGTGTCGAAGACAAGGCATTAGCCGCAAAGTCCAAGGAGCTGGAAAAGCAGCTGGCGGAGGATGCGGACAAAGAATCCAAGACAGTCAAGCTTCTGCTGCTTGGTGCTGGTGAGTCTGGGAAGAGCACAATTGTTAAGCAGATGAAAATTCTCCATCAAGGTGGTTATACCAAAGAAGAACAATTGGAGTTCAGGGCGATCATCTATGGTAACATCCTGCAGTCTGCTCTGGCCATCATCAGAGGCATGGAGATGCTGTCCATTGACTTTGGATCACCAAAAGGAAGTGAAGACGGGCAGAAGCTGTCCAACCTGTCAGACTCCATTGAAGAGGGCTCCATGCCCCCTGAGCTGGCTGATGTCATCAAGAGGCTGTGGAGTGACAGTGGTGTCCAGGCCTCCTTCGAGAGAGCAGCCGAGTATCAGCTCAATGACTCTGCTGGCTACTACCTTGGAGAATTGGACAGAATCACAAAGTCTGATTACCTGCCCAATGAGCAGGACGTGCTGCGTTCTCGAGTCAAGACAACCGGTATCATCGAGGAGCAGTTCTCCTGCAAAGAGCTGCATTTCAGGATGTTTGATGTGGGCGGCCAGCGGTCGGAGAGAAAGAAGTGGATCCATTGTTTCGAGGGTGTAACCTGCATCATCTTCTGCGGAGCCCTCAGTGCTTATGACATGGTGCTCGTAGAGGACGATGAAGTGAACCGTATGCATGAGTCTCTCCACTTGTTCAACAGTATCTGCAACCACAGGTTCTTCGCCACCACCTCCATTGTGCTCTTCCTCAACAAGAAGGATCTTTTTGAAGAGAAGATCAAAAAGGTCCACCTCAGCATCTGCTTCCCAGACTACGATGGCCCCAACACATATGATGATGCCAGTGACTACATCAAGAAGCAGTTTGAGGAGCTGAACATGAAGAAGGGTGTCAAAGAAATCTATTCCCACTTGACCTGCGCCACGGATACAAAGAACGTGGAGATTGTGTTCGGAGCCGTGACAGACATCATTATCAAAGAGAACCTAAAATCTTGCGGTCTGTTCTAAGCAGATACACAAAGAGATtgtatttttcccctcttccctTCATTTGGATTCATGTTGAAGTTGAGCAGTAGGAACAGAAGGCACAACAGAAGGCTTTGTAATGTCATAAGACTCTTCAATTCTACACTATCCCTTCATTCCTAACTCCCAACACCCTAAATTATGGGTAATGAAGGCAAATACAAAGAAAACAGCCCCTAACTTACTCCAAAGGGAGTCAACACACATGTCCAACAAATCGAACAAAGATGGCAACATGTTCCTCACGGAGACAATGTGGACGATGTCCTTTAGATGGAAATGTGGATAAGAAGTCAGAAGAACAACCGAATGAACACGTTTGATATAGGTACTTTATTAGATATTCTGGGGTTATTTCTGGCTCTTAAATGGTTTGTGTTGAAGAAAGTGTAGAAAGCTGCTCATGGAATCCAATTGATAAACTTATGAAAGGATACATTTTGAAGAGATCCATCTTACTCAACATGGTCAGAGTGAAGTCCTTTCCAATTACACTGTTCTTGCCCAATGATTTTTAATGTTTATATCTAGTTCTGTTTGGATATGCTTACTGTTTCGCACCAGATGTAACACAGTAAAAAGTTATTCAGCTAATTTCAATCAGCGAATTCAAATAGCTGAAATTTAAGAAAAAAGTACCATCAAAACAAGTTAGCAATGTATTTTGTAAATAGGGGACCTTAAACATTAATATTCAAATACGTTATGAAAATGTTCAACATCAGTGACATGTTTAGTGATGTGCATGTATATTCCATTTTGACTACTGACAACTGAACCTGTAACTGACTTGTGAAAGATAAAcattcaaaataaaaatgtatacataGCAACTGCCATTTCTGCATGTCATCattctttgtatttttttttacaaagataTGTGATATGACCTAAAGGTCACACAAAGTTTATTTACTGTTTAAAGGAATACTTCAAAAAAAAATGTGAGGTGAGCGAGCAAATAAAAATATGAACATTTCAACCCCTTTCAACCCCATTTCAACCCCACAAAATTTCAAccccttgtaaaaaaaaaaaaacaacaacattaataCAAACACCTTACCAAGACAGTTTTGCCTTTTTGTATAATGGTTTTGAAATTCACACTCACAGGGACCACAGTTTGAGTCCTGGTCAGGGTCCCCCTCTAATGAACTACATTGATGTTAAGTTTTGTAGCCACATAATGAATGCGACTTGGACTGTTACCATTTAGGTGCAGGATACCTACAATACTATTGAACTAAAATTCTTTAAAGATGAACAAGAGCTCAAGCattagaacatttgaggtgctggtactcagctcagctccggtgagctcctgtCCAAGTCAAGCACATAATCCAAAAGGAAGGCTACAGGTCATCTTTTTTCCTAAAATGACTGTTTGCGATTTACAAATGATTACTTTGATTAACCACGCTTCAACCGAATCGAATACTACAAGGGCAAAGTGAATCATTTAAAATATTAAATTCATATGAATCacaattttaaatgtatttaacctttatttaacgaggcaagtcagttaagaaattattatttacaacgacggcctaccccggccaa

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(t) subunit alpha-2-like isoform X1

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569315.2 False 2867 mRNA 0.42 9 63356672 63372554
XM_021569314.2 True 2909 mRNA 0.42 9 63356674 63372554

Neighbor

gene id symbol gene type direction distance location
LOC110494341 LOC106565672 coding upstream 91159 63249564 ~ 63265513 (+)
LOC110494340 LOC106565674 coding upstream 117921 63232397 ~ 63238751 (+)
LOC110494339 NA coding upstream 130112 63219189 ~ 63226560 (+)
LOC110494337 LOC106565677 coding upstream 155468 63196079 ~ 63201204 (+)
pfdn5 pfdn5 coding upstream 162005 63188495 ~ 63194667 (+)
LOC110494347 LOC106565667 coding downstream 93547 63466101 ~ 63471249 (+)
LOC110494349 LOC106565665 coding downstream 144182 63516736 ~ 63543481 (+)
LOC118940486 NA coding downstream 202006 63574560 ~ 63580589 (+)
srsf3b LOC106565658 coding downstream 285819 63658373 ~ 63663255 (+)
cdkn1a LOC106565657 coding downstream 293294 63665848 ~ 63671434 (+)
G1474200 NA non-coding upstream 1755 63354718 ~ 63354917 (+)
G1474199 NA non-coding upstream 1983 63354357 ~ 63354689 (+)
G1474181 NA non-coding upstream 107626 63248831 ~ 63249046 (+)
G1474176 NA non-coding upstream 111074 63245373 ~ 63245598 (+)
G1474175 NA non-coding upstream 111405 63245011 ~ 63245267 (+)
G1474202 NA non-coding downstream 435 63372989 ~ 63450910 (+)
G1474170 NA non-coding downstream 27309 63399863 ~ 63409817 (+)
G1474601 NA non-coding downstream 82559 63455113 ~ 63455349 (+)
G1474604 NA non-coding downstream 84334 63456888 ~ 63457111 (+)
G1474613 NA non-coding downstream 89908 63462462 ~ 63462670 (+)
G1474159 NA other upstream 139078 63216948 ~ 63217594 (+)
G1473177 NA other upstream 645536 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 657857 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1799634 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2357609 60972478 ~ 60999063 (+)
tmcc2 LOC106565656 other downstream 311536 63684043 ~ 63691033 (+)
G1475820 NA other downstream 1190820 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1235700 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1382767 64755321 ~ 64780475 (+)

Expression


Co-expression Network