LOC110494346 (LOC106565668)


Basic Information

Item Value
gene id LOC110494346
gene name LOC106565668
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63403851 ~ 63409818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569318.2
gtgcaagagagagggagagagtgagtttatgtgtgtgagtgtgcggtTTACATTAGCAAGTAGAGGGAGACAACATTTGctccttttctttttttctctctctcatccccttaAATCTATCACTGTCAACACAGCTACCCTCATCCGGAAAATAACCGAAAGACAAGGCAaaggcagaggaggagaagaatagCAGTCTGATAAAGAAGGGGAGTGCCATAGCAGCAGTCAGCACCATACACAACGCATGCGGCTGACTGATGTCTATCCTGCATCCCAGcactgggagctaaccaaccagctTAATATCCTtaaagagcagagcagaacagacagcAGGCTACATCATCACAAAACCTGCTGATCCAGGAGAAGGCCTGCATTTCTGAGGAGGTTATTAAGGGAGGTTGAGCATTCCCAGGATGACCCAGGCTAACAGGCCCCTTTTACAGAGCTGCTGCTATCTGACCTCCTCCCAGACTGGGCCTCTGGTTCCTGGCCCTGCTCCCTGGCTGTGAAGGATGGGTGATGGGCCTGTGATTGACACCCTCTGTCTACCTTGTCCCGCCATCCGATGGAGCCGTTGTGgaactcctccctccccttctcacaGCCCATGCCCAACACCTCAGCCTCTGAGTCACCTGAGAGCGGGGCTTTGTCCCAGTCACTAGCACTGCTCGCCATGCTGCTCATGGACCTGCTGGCCGTGGTGGGCAACGGGGCCGTAATGGCTGTCATCGCCAAGGCCCCACAGCTCCGTAAGTTTGCCTTTGTCTTCCACCTGTGCCTGGTGGACCTGCTGGCAGCCCTGGTGCTGATGCCCCTGGGCATGCTCTCAGGCAGGGCCTTCTTTGGCGAAGCCCTGTGCCGGAGCTACCTCTTCCTCAGTGTGTGCCTGGTCACCGCCGCCATCCTCTCCATCTCAGCCATCAACGTGGAGCGCTACTACTACATCATCCACCCCATGCGCTACGAGGTGAAGATGACCCTGGGCCTGGTGGCCTCAGTCTTGGTGGGGATATGGGTCAAAGCCCTGGCCATGTCAGCCCTGCCGCTGCTGGCCTGGGCCTTACAGGGCGGGAGGACTCCTTTTCTGGAGGGTGTTGGAGttgggggagggggtgagggtGTCCCCTCACCCCCAGCTCAGAGTCACAGGCGCTGCTCCTTGCACTGGACGGGGGGTGGGTCGAACCGCATGGCCTTCATGGTCCTGTTCACGTTAGTGTACTTTCTGTGCCCGCTGCTGGTCATCCTGGTGGTGTACTGCAGTATGTTCAAGGTGGCGCGGGTTGCGGCAATGCATCATGGGCCTCTGCCCACCTGGATGGACACGCCCCGCCGCCGGCGCTCTGAGTCGCTCAGCAGCCGCTCCACCATGGTGACCAGCTCAGGAACGGGCACGGGGACAGGGGTGGGGCGCGACACCCCTCACCGCACATTCGGAGGGGGAAAGGCGGCAGCAGTTTTAGCAGCAGTGGGAGGACAGTTCCTGTGCTGCTGGTTGCCCTACTTCTCCTTCCATCTGTACTCAGCTCTGGCCTCTAGCCCTCCAGCCACGCTGGCCCCCCTGGAGGAGGTCGTCACGTGGATCGGCTACTTCTGCTTCACCTCCAACCCTTTCTTCTACGGTTGTCTGAACCGGCAGATCCGCGAGGAGCTTGGCAAGCATGTGCCTTGCCTGTTTCGCCGGGCGACAGAAGAGGAGGACCGACTGCCCAGCCGTGAGGGATCCATAGAGGAGAATTTCCTGCAGTTCCTCCAGGGCACTGGCTGCAACCTAGATCCCCAGGACTCCCACAGCACCTCCAGCCCCAAGGGAGAGGCCTGCCGCCCCCTGGCCCAGCCCCCTCAACCCATTCCCATCGACTTCCGCATCCCAGGACAGATTGCAGAGGAGACCTCAGAATTCCTTGAGCATCACCAGATTAAAAACAACCATATCCTATCAGACAGTTaggttttgtatttatttgatgTAAAAACCAACACAAAAAGTTACTTGGATAACAATTACCACAGTAACATAACCACACTCTGGTTTACGTCAGAGAGTATTACTATACAATGTTTTGATATTTTCTTTTTGATTATATTATTCTTAAAACTCAAAAGTTGTGCAATGGGAAATTGACTGAGAGTTTTGTGGAGTCTGTATTGTCCTGGATCACTTTTTGCAGCTTCACTTTCCATTCTGTAAATGCTGTAATGCTATGGAATTGATCTTCTTTGAGTAATGTTCCCATTGGAATCACTTGCTGGGAAAGGGTCGTGGCATTTTTGGGAGAAAGACAAAATGGCACAACTGTAGCTGCAGGGAACAGGCTAAAATTGCCAGTGATGCCGATATTGGTGTTGTTTGTTAGAATGAGTTTTAAAGATGTAAttctttacatattttttttttcccaCAACGCATTGATAGGGCCAGTATGTTATTAATACAGATATctcggtaacactttatttggatagtccatttGTAGCTCTACAGACTATATACAGACGATCAGTAACATTTAAAGTAGCTATCTACTAATCTTAActcttatcctaaccctaaacttaacccttagcctaaccttaacccttattctacacctaaccctaaccgtatccttagcaagcagttgcttatcaacagatagtttgttgatagtatgaccaggctatccaaataaagtgtgaccattATCTCTTCTGAGAATTTCCTTTTGGATTTCAAACCAAACAAGCCCTTGAGCAAAGAGGCTATAGATGACTTTCCTTCTATTAGCATACCTTAAACCATATCAGGATCTATGACTTTCAGAAGACATCCACAAAAAATGTATCTAATATTTAATACTGGCAGATCAATTACTTTTTGAGGAACTGATTTATGACAGCTTATTTATGTAAGCTGCAGAACAAAGACACCAATGTTGGAGTGCAGGAAGTCATGTTTGAAAATAGGAAGTTTTCCTGATCCCTTTACCTCTGTAAAATATCATGACACGGATGTATagtagacagtgagtgagtggTCACCATGTCTCTACGATAAAGATAAGTTGTGCCTTTTAGAGATGATGACAGAGCTACTGTACCGTAATTGTGCCCGGGTTCTGAAGAGGATGCAGGTAGGGTATGAAGTAAGAAGTACCATGGATCAGCCACCTGTTGTTGATAGGTAAACCTCTGAGCAGATACACCCCCTCTCTGGTGCTTTTCCTTAACACATCATCTGTGTTTTCCCATAAGCAGACCAGGTTTGTTGTGACCACAGTGAGGATGTAGGCAATCTTTTCTTAACTCCTCCTAAACTACTTCTGGTCTGTCAGAAAATTACATCTATGTATCATCTATCTACCATTTAGATAGTACAGTACCCCTCAAATTGACATGGGAAGGTGTTCAGTACATTGGCAGACGTTCAGTTAAGGCAGGAGTATTTTTGTTAACTGATGCACTACATTACATTTCTATACAATTAAGATTTTGACAGATGTCGTTCTACAAATGTAGCTGTGTTTTATGTTTGATTAAAAAAACTAATAGTGAGTTCAACTTAAGCATTTAATTATTgcaaattatttattattattaggtATTATTGATTACTGTGTCTTTTGTGATTAATTAACAAAAGACAATGGTGTTTTCAAATGGTATACAGTAACTgtcttttcagtgtgtgttgattAGCTGTGGAGCAACAGGTTGGAGAATATAATAAACCTAATTATATTCAACAGTCCTGCTCCTCAGGGTTCTCTACCTCAGATACAAGATTGATTTCATTTGAAGGTCAGCACGCAATGTACCGATAGAAAAGATATGGTGTAAGTCATGCCACATATTTTTTACTCTATGCTCCCTGGGTTGCTTTCCTTCTGCAGCTGGACAAGGCTTTGTCTGAGAGGCTTGATATGACGCCTGCTTTACGTCTGCTCTCTCTGGTGTCACATTGTGAGGGAATTTAGAGTTGTTTGAGTTGCCCAGAACAGTACTGGACACTTTGAGGTATCCTCAGCCCTGTGAAACCATAGACGGTTAACGCAAGAGTACAAAATTAAACATTTTCTTT
>TU1686362
ctgtgtgtgagtgtgcaagagagagggagagagtgagtttatgtgtgtgagtgtgcggtTTACATTAGCAAGTAGAGGGAGACAACATTTGctccttttctttttttctctctctcatccccttaAATCTATCACTGTCAACACAGCTACCCTCATCCGGAAAATAACCGAAAGACAAGGCAaaggcagaggaggagaagaatagCAGTCTGATAAAGAAGGGGAGTGCCATAGCAGCAGTCAGCACCATACACAACGCATGCGGCTGACTGATGTCTATCCTGCATCCCAGcactgggagctaaccaaccagctTAATATCCTtaaagagcagagcagaacagacagcAGGCTACATCATCACAAAACCTGCTGATCCAGGAGAAGGCCTGCATTTCTGAGGAGGTTATTAAGGGAGGTTGAGCATTCCCAGGATGACCCAGGCTAACAGGCCCCTTTTACAGAGCTGCTGCTATCTGACCTCCTCCCAGACTGGGCCTCTGGTTCCTGGCCCTGCTCCCTGGCTGTGAAGGATGGGTGATGGGCCTGTGATTGACACCCTCTGTCTACCTTGTCCCGCCATCCGATGGAGCCGTTGTGgaactcctccctccccttctcacaGCCCATGCCCAACACCTCAGCCTCTGAGTCACCTGAGAGCGGGGCTTTGTCCCAGTCACTAGCACTGCTCGCCATGCTGCTCATGGACCTGCTGGCCGTGGTGGGCAACGGGGCCGTAATGGCTGTCATCGCCAAGGCCCCACAGCTCCGTAAGTTTGCCTTTGTCTTCCACCTGTGCCTGGTGGACCTGCTGGCAGCCCTGGTGCTGATGCCCCTGGGCATGCTCTCAGGCAGGGCCTTCTTTGGCGAAGCCCTGTGCCGGAGCTACCTCTTCCTCAGTGTGTGCCTGGTCACCGCCGCCATCCTCTCCATCTCAGCCATCAACGTGGAGCGCTACTACTACATCATCCACCCCATGCGCTACGAGGTGAAGATGACCCTGGGCCTGGTGGCCTCAGTCTTGGTG
>TU1686361
ctgtgtgtgagtgtgcaagagagagggagagagtgagtttatgtgtgtgagtgtgcggtTTACATTAGCAAGTAGAGGGAGACAACATTTGctccttttctttttttctctctctcatccccttaAATCTATCACTGTCAACACAGCTACCCTCATCCGGAAAATAACCGAAAGACAAGGCAaaggcagaggaggagaagaatagCAGTCTGATAAAGAAGGGGAGTGCCATAGCAGCAGTCAGCACCATACACAACGCATGCGGCTGACTGATGTCTATCCTGCATCCCAGcactgggagctaaccaaccagctTAATATCCTtaaagagcagagcagaacagacagcAGGCTACATCATCACAAAACCTGCTGATCCAGGAGAAGGCCTGCATTTCTGAGGAGGTTATTAAGGGAGGTTGAGCATTCCCAGGATGACCCAGGCTAACAGGCCCCTTTTACAGAGCTGCTGCTATCTGACCTCCTCCCAGACTGGGCCTCTGGTTCCTGGCCCTGCTCCCTGGCTGTGAAGGATGGGTGATGGGCCTGTGATTGACACCCTCTGTCTACCTTGTCCCGCCATCCGATGGAGCCGTTGTGgaactcctccctccccttctcacaGCCCATGCCCAACACCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569318.2 False 4072 mRNA 0.47 2 63403851 63409806
TU1686362 False 1030 TUCP 0.55 2 63406905 63409818
TU1686361 True 643 lncRNA 0.51 2 63407292 63409818

Neighbor

gene id symbol gene type direction distance location
LOC110494345 LOC106565669 coding downstream 7786 63372980 ~ 63396065 (-)
LOC110494343 LOC106565671 coding downstream 50932 63271785 ~ 63352919 (-)
LOC110494336 LOC106565676 coding downstream 193354 63201436 ~ 63210497 (-)
LOC110494331 LOC106565516 coding downstream 386777 62990855 ~ 63022358 (-)
smarcc2 LOC106583239 coding downstream 418949 62971037 ~ 62984902 (-)
LOC110494348 LOC106565663 coding upstream 74668 63484474 ~ 63489636 (-)
LOC110494351 LOC106565666 coding upstream 143940 63553746 ~ 63558976 (-)
LOC110494350 LOC106565664 coding upstream 149304 63559110 ~ 63573126 (-)
LOC110494352 LOC106565661 coding upstream 173026 63577391 ~ 63641540 (-)
usp49 usp49 coding upstream 281982 63691788 ~ 63700037 (-)
G1474453 LOC106583073 non-coding downstream 34797 63356709 ~ 63369054 (-)
G1474543 NA non-coding downstream 47465 63356163 ~ 63356386 (-)
G1474525 NA non-coding downstream 92223 63288812 ~ 63311628 (-)
G1474501 NA non-coding downstream 184666 63218962 ~ 63219185 (-)
G1474500 NA non-coding downstream 184939 63218682 ~ 63218912 (-)
G1474727 NA non-coding upstream 71460 63481266 ~ 63482656 (-)
G1475286 NA non-coding upstream 256278 63666084 ~ 63666687 (-)
G1475287 NA non-coding upstream 256893 63666699 ~ 63667296 (-)
G1475288 NA non-coding upstream 258656 63668462 ~ 63668661 (-)
G1474425 LOC106565679 other downstream 258764 63133825 ~ 63145087 (-)
G1474395 NA other downstream 303099 63048639 ~ 63100752 (-)
G1473866 NA other downstream 673348 62730153 ~ 62730503 (-)
ccdc174 NA other downstream 1153213 62246379 ~ 62250654 (-)
G1471564 NA other downstream 2764516 60638180 ~ 60639335 (-)
G1474741 LOC100136012 other upstream 100310 63510116 ~ 63510543 (-)
mrpl20 mrpl20 other upstream 685301 64094912 ~ 64097564 (-)
G1475493 NA other upstream 724373 64134179 ~ 64135341 (-)
G1475896 LOC106565632 other upstream 1168522 64578328 ~ 64579253 (-)
G1475940 NA other upstream 1189088 64598894 ~ 64599214 (-)

Expression


Co-expression Network