LOC110494349 (LOC106565665)


Basic Information

Item Value
gene id LOC110494349
gene name LOC106565665
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63516736 ~ 63543481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950422.1
cGCTCATACACTGGGTACCACCAGACTAGGTCGAAATTGGCACGGAGCAGATGTATTTGCCCCATGCTGGTGTGTTCGAATTGTTTTTACATTGTAAACACTGGATATAGGTTATTTCTTCGAAATATTTAAGGACCAAAGCCCAAATCTGGAGCcctgcgctctctctcttctcaacgTCTGGCACCTAGCATCCAACCCCTCTACttcatacctacagtacactctgaactctccctctctttctgtctctctgttggtctctctctctctgcgccaaCCCCCTCCCAGCTCCCCCCTCAGCATCCCTGATGCGTAAGAACAGTAAGGTGACGCAGCGTGAGCATACCAGTGAGCATGTCACAGAGTCGGTGGCAGACCTGCTCGCTCACGAAGCGCCGCTCGACTACAAGAACAGTTCTCTGAATGTTGGAGGGGTACCCGGGAAGAAGATTGTTCTCGAGCCCCCCGAGAACGATGGCCGCCCAGCCTGGAACAGCAAACTTCAGTACATTCTGGCCCAGGTGGGCTTCTCTGTGGGGCTAGGAAACGTCTGGCGCTTCCCTTACCTGTGCCAAAAGAATGGAGGAGGTGCCTATCTGGTCCCGTAtttcatcctcctcatcctcatcggCGTCCCGCTCTTCTTCCTGGAGCTAGCGGTGGGCCAGAAGATCCGACGTGGGAGCATCGGGGTGTGGAACTACGTGTGCCCCCTACTGGGTGGGATAGGGGTGTCCAGCCTAATGGTGTGTGGCTTTGTGGGGCTCTACTACAACGTCATCATCGGCTGGAGCATCTTCTACTTCTTCCAGTCCTTCCAGTACCCACTGCCATGGGCAGAATGCCCTATCAGGAGGAATGGATCATTAGCCATCGTGGAGCCTGAGTGTGAGAAAAGCTCGGCCACTACCTACTTCTGGTACCGCCAGACTCTGAACACCACCAGCACCATTGCAGACAGTGGTGGCCTGAACGTCAAGATGACCCTGTCTCTGCTGGTGGCCTGGATCATCGTCTGCCTGGCTGTCATCAGAGGCATTGCGTCCTCCGGGAAAGTGATGTACTTCAGCTCGCTGTTTCCCTACGTGGTGCTCTTCTGTTTCCTGGTGAGAGGTTTGCTGTTGAAGGGTGCTGTTGATGGCATTGCACACATGTTCACTCCCAAGCTGGAGAAGATGCTGGAGCCCCAGGTGTGGAGGGAGGCAGCCACCCAGGTGTTCTTTGCCCTGGGCCTGGGCTTCGGTGGAGTGATTGCCTTCTCCAGCTACAACAAGATAGACAACAACTGCCACTTTGACGCCGTGCTCGTCTCCTTCATCAACTTTTTCACCTCCATCCTGGCTACTCTGGTGGTGTTCGCCGTGCTGGGCTTCAAGGCAAACCTCATGAACGAGAAGTGTGTCATGGAGAATGGAGAGAAGATCCTTGGCTACCTGAACTCTAACGTGCTGAGTCATGACCTCATTCCGCCACACGTGAACTTCTCCCAGCTGTCCACCGTAGACTACGCTGAGATATACGCCGTCATCAAGACGGTGAAGGAGGGCAGCTTCGCCGAGCTGAGCCTGGACCCCTGTGTCCTGGAGGATGAGCTTAACAagTCTGTGCAAGGTACAGGCTTGGCTTTTATTGCCTTCACCGAGGCCATGACTCATTTCCCAGCCTCTCCCTTCTGGTCTGTCATGTTCTTCTTCATGCTCATCAACCTGGGCCTGGGCAGTATGATCGGCACCATGACAGGCATCACCACGCCGGTCCTCGACACCTACAAGGTCCAGAAGGAGCTCTTCACAGTGTGCTGCTGCATCATAGCCTTTTTCTGTGGCCTCCTCTTCGTCCAGCGCTCTGGGAACTACTTTGTCACCATGTTTGACGACTACTCCGCTGGTCTGCCTCTCACTATCGTGGTCATCCTGGAGAATGTGTCAGTGGCCTGGATCTACGGCACCAAGAGGTTTATGCAGGACCTGGAGGACATGTTGGGTTTCCGGCCCCACGCCTTCTATTTCTACATGTGGAAGTACGTCTCCCCTTGTTGTCTCATCGTTCTCATCACAGCTACCGTTATCGAGATGGCCATCAGCCCGCCAGGGTACAATGCATGGGTAGAAGAACTGGCTCAGGAGCGTTTCCAGAGCTACCCTCCCTGGGCATTGGCCATGTGCTTCTCCCTCATTGTGGTGGCCATGCTTCCTCTCCCCGTCGTCTTCATCGCCCGCTATTTCAACCTGATGTCCGACGGCTCCAACAAGCTGTCTGTCTCCTATCGCAAGAACATGATGAAGGACATCTCCAACCTGGAAGAGGTGGATGAGGCGCGCTCCATCCTGGGCAAAAACCCAGGAGAGACGCCCTCGCCTAAGCCCCCATCCCAAGCCTACCTCGGCCCCCCTGGCACCAACCCCCTGGAAAACCCTAACTCCCTGTCCCCCAACAGCTGCTACGGGACAAGCTACCAGAACGCCATCAGCCCACAACCTCCACCACCCCTATCACCCCCACTACCACTGAGTCCAACTCATGATCACTGTCCATCTTCTTCATGTCCCTCCCCTAGCCTGACCCTAGATCCCTAACTATCTCTCCCTCCTAGGCCATCTCACCCTCAACCCTACATAGTCTCACCACCAGGGGGTGCTGCAGCGCTTCCCAAAACTCCACAACCACCACCCTCACCCACTGAGTGACCCTTATCGCAggacacccctctccccctctcccttcccccccagCCCCAGAGGTTAGAGTTTACTGCAGCAGAGGTGACTGCCACACAGGCCTCTGCTTTGACAATGAACTACATGTTCAGGTGTCTGGGATGTTGCAGTGGTATGTATCAATCCCTACTGGAGGGTATGCAATGCTGAACATGCAGTATGTTTTGGTCTAGATCAGGGATCTCTAAAAGGTGGCCCGCGGGTGATTTCATTTTGCCCCCCAATTTTTATAAACAAACAtgttcattgttggacataaaatcaTCAGGAAATCAGCTTAAAGAAAGTATTCCCACGGAAAAATAGAGAGGCATATGTGATCGTatcccaatgtaatcaaggtttgaaatgattctgtttttgtcaaatactatatctgtttgggattcttgtggtcaatttgcagtgtacaaataaTTTCTAACTATGTTCCGGCTCCCCGACCATCCACTCAAGGAAGAATCGACCCACGGCTGAATGTAATTGGGGAAACCTGGTCTAGATGTTTTTAGAGTAGTAGGAGAAGAGGCTCAATAGAAATGGAcccaataaatgttttttttcttcccctcACGCATATTGATAGGTAATAATAATGACACTATAAAGTACGAGATTGACAGTAACCTAATAACCTCATAACAGGTTAACATTTGCATAATATTTGGCCTCTAGGGAGTGTTATATGGCCTGCTTTTCATGCTTATTATAGACAGAGGTCAAGGGAATGTAGAGGAACCTCATATTTACATTGCCATTAAGTGACAACTGAATGTGAGTAGCTATATATGCTTGTTGCAGGTTTGAAGCCTTTTAAGCATTGCAGTGTCAGTCCTCTATACCATATTATAGCCATAGAGTGTGGTTATGCTCTTCCTTTATTTTATGTGGAACATTTCCTTGTAATTTAGTGTGCCACGGAAGCACTTGAGTGAACCACTGCTCTTGACACACCTCCTTTCGCTTCAATGCAATACCTGCTTCAGCTAAAACTGTTTAGAGGCAGGAACAATGGACTGTTTGCAGTCCAGAGGGCTTTGGGAAGCCACTATCTTCATTGTCTATTTGCTAGTTtcgggttgggggg

Function

NR:

description
sodium-dependent neutral amino acid transporter SLC6A17

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950422.1 True 3807 mRNA 0.51 12 63516736 63543481

Neighbor

gene id symbol gene type direction distance location
LOC110494347 LOC106565667 coding upstream 45487 63466101 ~ 63471249 (+)
LOC110494344 LOC106583073 coding upstream 144182 63356672 ~ 63372554 (+)
LOC110494341 LOC106565672 coding upstream 251223 63249564 ~ 63265513 (+)
LOC110494340 LOC106565674 coding upstream 277985 63232397 ~ 63238751 (+)
LOC110494339 NA coding upstream 290176 63219189 ~ 63226560 (+)
LOC118940486 NA coding downstream 31079 63574560 ~ 63580589 (+)
srsf3b LOC106565658 coding downstream 114892 63658373 ~ 63663255 (+)
cdkn1a LOC106565657 coding downstream 122367 63665848 ~ 63671434 (+)
tmcc2 LOC106565656 coding downstream 140562 63684043 ~ 63691033 (+)
bysl bysl coding downstream 158597 63702078 ~ 63705600 (+)
G1474648 NA non-coding upstream 2320 63514147 ~ 63514416 (+)
G1474645 NA non-coding upstream 9900 63506409 ~ 63506836 (+)
G1474632 LOC106565663 non-coding upstream 27136 63484375 ~ 63489600 (+)
G1474628 NA non-coding upstream 37217 63479319 ~ 63479519 (+)
G1474626 NA non-coding upstream 37833 63478599 ~ 63478903 (+)
G1474650 NA non-coding downstream 25 63543506 ~ 63545595 (+)
G1474725 NA non-coding downstream 101530 63645011 ~ 63645409 (+)
G1474803 NA non-coding downstream 107553 63651034 ~ 63651292 (+)
G1474814 NA non-coding downstream 123994 63667475 ~ 63667700 (+)
G1474159 NA other upstream 299142 63216948 ~ 63217594 (+)
G1473177 NA other upstream 805600 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 817921 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 1959698 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2517673 60972478 ~ 60999063 (+)
G1475820 NA other downstream 1019893 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1064773 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1211840 64755321 ~ 64780475 (+)

Expression


Co-expression Network