LOC118940486


Basic Information

Item Value
gene id LOC118940486
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63574560 ~ 63580589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037047.1
atcaagagaaattatagataacatatcggtgctcatcggccattggacataaacattacactcaaGTGGTTTCGAAGGAATCAATGACAGTGGCTGTGTGTTCCCAAATCTGGGTTTAAGGGGCTCTTTTCccagtttaaaatgataaacattcaacattggccatgctgtcaatgaagcaagATTTGTGCCGAGGTCAAAACAACTGTTGACTTGGAagaccgccgcgccaccttcctgcacaacaatGAGCAGATACCTACATGGGTGATTGAACAATGAACTGAGGTCCatactccagtccagttggtggtggtaatgcaccttaaagttggttgccgacatataaagtccaaagaaagAAGACTGAAAGAGcctacaccggacgacgctgggccaattgtgcgccgccatatgggactcccaatcacggccggatgtgatgcaggcTGAATTCGAAGCAGGGACAcgtcttgcactgagatgcagtgccttagaccactgggaGAAACCCTGTGAGACCTGGTGACTGGGGAGCACTGCAGAGTGGAGGAGCACAAAACGGTGAACTACTGGACCATAATGTAACTTGGAACTGTTCCAAATGCCCTCTTTCTACACATTATTGACACATGTGTATGGCATCTTTGCAATTGACCCTACAATTCCAGTGAATGGTGAGGATGTGAAGAAGCACTTCTGCTTGGCACAGCAGCTTTGGGTTGTTCACCAAAGCGCCAAAGAGCAAAGCTCTCCTATGAGCCTTGAAGAAATGACCTGTTTGTGAAGAGAACCTGGACAGATTGACTCTGATCTGGGAGACATGCCCTACTCTGGATACGTTGCAGCATTCTCTGCAAACCAACTGAATATTGATGCCTTCATGGAGGACAAGGAGCCGTGCTTTAATGTCTCCCAAATGGTCTGCTGAAAAGTTGCTGTATTTCTAGAGCCCGTCTGCCATCAACAACATCCCTGCAGTCGTTGTACGATCAGAAGACGCTCTATGGATACAGTTTGTTAGTCAGACATGCTATTTAGTGAGTCACAACTGTGGTGCTATTTTGTCGGTTTACAGTTGAGGAAACTTTGCAGCCTCGTATGCACTTGGCAGATTGACACTGGAGGAGAAACCATGTGAGCCAACAGAATATAATGGATTTGGAGGTGAATACTTAAAATACTTATTTCAGGTGATCATGAAATCACCCATGAAAGGAAGTTTCCTCCGCTGTTTGGAGGGCAGTGTAGCCTGTGTCACCTATGGCAGCTGTAGACATCCTAGCGCCTGGACTAAAATACAGTCATTCTTGGCCCAGTCTTAAAAAAAATTAATCAGCCAAATCAAATATTGTTTATACTTGAATCTATATTTTGTCATTTACAGCACTGTTCACATGAATAAATAgtttattcattcta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037047.1 True 1422 mRNA 0.45 3 63574560 63580589

Neighbor

gene id symbol gene type direction distance location
LOC110494349 LOC106565665 coding upstream 31079 63516736 ~ 63543481 (+)
LOC110494347 LOC106565667 coding upstream 103311 63466101 ~ 63471249 (+)
LOC110494344 LOC106583073 coding upstream 202006 63356672 ~ 63372554 (+)
LOC110494341 LOC106565672 coding upstream 309047 63249564 ~ 63265513 (+)
LOC110494340 LOC106565674 coding upstream 335809 63232397 ~ 63238751 (+)
srsf3b LOC106565658 coding downstream 77784 63658373 ~ 63663255 (+)
cdkn1a LOC106565657 coding downstream 85259 63665848 ~ 63671434 (+)
tmcc2 LOC106565656 coding downstream 103454 63684043 ~ 63691033 (+)
bysl bysl coding downstream 121489 63702078 ~ 63705600 (+)
dstyk LOC106565654 coding downstream 159773 63740362 ~ 63779877 (+)
G1474650 NA non-coding upstream 28965 63543506 ~ 63545595 (+)
G1474648 NA non-coding upstream 60144 63514147 ~ 63514416 (+)
G1474645 NA non-coding upstream 67724 63506409 ~ 63506836 (+)
G1474632 LOC106565663 non-coding upstream 84960 63484375 ~ 63489600 (+)
G1474628 NA non-coding upstream 95041 63479319 ~ 63479519 (+)
G1474725 NA non-coding downstream 64422 63645011 ~ 63645409 (+)
G1474803 NA non-coding downstream 70445 63651034 ~ 63651292 (+)
G1474814 NA non-coding downstream 86886 63667475 ~ 63667700 (+)
G1474813 NA non-coding downstream 92311 63672900 ~ 63673428 (+)
G1474159 NA other upstream 356966 63216948 ~ 63217594 (+)
G1473177 NA other upstream 863424 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 875745 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 2017522 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2575497 60972478 ~ 60999063 (+)
G1475820 NA other downstream 982785 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 1027665 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1174732 64755321 ~ 64780475 (+)

Expression


Co-expression Network