srsf3b (LOC106565658)


Basic Information

Item Value
gene id srsf3b
gene name LOC106565658
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63658373 ~ 63663255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569327.2
AGTAGGTCATATCCGTCTGTTACGTAAGACGGATAGATGGTACACACGATCCATAAAGATTTCCGGTCTCCATTTTATTGTAGCTTGCAGATACAGACAGGCGGTTCGACGAAGGACAGGAAACGAATCGACTATCAGTGTTTGTTTTAAAATACGTTACGTTTCTCATTGACGTTTGTGGAGTATCAATTTTTGTTTTGAAAATTGAGGCCTGTTGAAATGGGAGatccaGCCATGCACCGAGATTGCCCTCTCGACTGCAAGGTCTACGTGGGAAACCTGGGGAACAATGGCAATAAGACAGAGCTGGAGCGGTCATTCGGCTATTATGGACCACTTCGCAGTGTCTGGGTAGCTAGGAACCCCCCAGGCTTTGCTTTTGTGGAATTTGAAGATCCAAGGGATGCAACCGACGCAGTGAGAGAACTTGATGGAAGGACATTAAGTGGTTCCCGTGTGCGAGTGGAGCTGTCCAATGGGGAGAAACGCACCCGCAACCGGGGTCCTCCTCCATCGTGGAGCCGACGTCCTCGAGATGACCATCGTGGGCGTCGTGGTAGCCCGCCCGCCAGGCGCAGATCCCCACGTAGGAGGAGCTTCAGCCGCAGCCGAAGCAGGTCTCTCtccagagacaggaagagggagagatcTTTGTCCCGGGACAGGAACCACAAACCCTCAAGATCATTTTCCCGATCAAGGAGCCGCTCCAGGTCTACGGAGAGAAAGTAAGGAAATGCATGGCAGTCGAGTTTGACGGCAAAGAAGATGAAtgaactttcttttttttttacggaTATTTTAGCGGTTTCATTTTTGCTTCTCTGTGACATGTAAGGTATCCAATTCCTCTGTATTTTGTAAATAAGTTGGTATGCAGGTGTAACGCATGACTAAAATGGTTGTTAGTCCTGTTAATGCCAAGACATACCGTAGTTGTCCCCAAGCAGTATTCCATTTCATCAATCATTATAAGCGTTCTCTATTTGTCCATGAGTACCAGCTCACAGAAACACACCATTCTAAATAGTCTAGTGCTCAAGTCATGTTCCATGTCTGCAAGATTAGTGTGTCTGGATGTGGTGGAAGGCTATGGTCAGCTATCCTATTGTCGGTTAATATACCGATATGTTTTCTATCGACCTCTAGGACTTCCACTATTCTTCCAGTTCCTGTTGGTAAAGGTTTGTCTTTGCAAATAACGGCACCCTTATTTTGTCTACAATAGCCCACTGTTTTTCTTTTCCTTGATATTTGTACTACTTATGTTCTCTGAATTAAACTAGTTGTAAAAAGGCTTCTTACA
>TU1686655
ATTTTATTGTAGCTTGCAGATACAGACAGGCGGTTCGACGAAGGACAGGAAACGAATCGACTATCAGTGTTTGTTTTAAAATACGTTACGTTTCTCATTGACGTTTGTGGAGTATCAATTTTTGTTTTGAAAATTGAGGCCTGTTGAAATGGGAGatccaGCCATGCACCGAGATTGCCCTCTCGACTGCAAGGTCTACGTGGGAAACCTGGGGAACAATGGCAATAAGACAGAGCTGGAGCGGTCATTCGGCTATTATGGACCACTTCGCAGTGTCTGGGTAGCTAGGAACCCCCCAGGCTTTGCTTTTGTGGAATTTGAAGATCCAAGGGATGCAACCGACGCAGTGAGAGAACTTGATGGAAGGACATTAAGTGGTTCCCGTGTGCGAGTGGAGCTGTCCAATGGGGAGAAACGCACCCGCAACCGGGGTCCTCCTCCATCGTGGAGCCGACGTCCTCGAGATGACCATCGTGGGCGTCGTGGTAGCCCGCCCGCCAGGCGCAGGTAACTCATCTCCCATACAGGGCTTTATGATAGCAATGCCCAACAGACTACTAATCCCTTTCTGTCCCTTTTACTAGTTAATCTACTTGTTTTGTTCCCGTGTCCTCTTTCCAAACTGCATCTCCTGTTTCGCTGCACCGTAGTGATAGTTTAGTGTTTGATAACCCCTTTTCCATGGTAGTCTACAGTGGTTAGTGTAATGTGGTGCTGAAGGCATGCAGTTTTCATCTTCATTATCATTGTTTAATGACTTCCGGGGTACTTTAGATCCAGGGGGTGGGTACAGTGTGAAATTAAGTGTGCTGATTTGTATGCCAAGTTTAAGTGATAAGTACATTTGCGTTTTCTCTACCACATTTTCTCTAAATTTGGCTTGCAAGCTTTTCACTGTTACCTGAAGCACTGAACGTGTTTTGGAAGTAGGTGATTCATATTTCAGACCAGTACCTCACTATGAACCGGGTGGGAGGGAAGCTTAATGATGCTAGGTTGGTTGTTTTTGTTACAATTTGAGGTTGCTTTTTTTATTGACCATTTATATTAATAAAAATGAACCCCGTTACAGAGTCATCACCATGCCTCTTCTCACCACCCTCTGAGTCAGTCAACTAGTCCTCTTTCAGCATCATGTGACCATTGACCAGCGTGCCCCAATCAGCTTGGCTGATGTCGTGTCACATGGCCAGTCGTCAGGTTGCACCAGCCCATTGGTTCCTGCGCATGCAGTTCTcagcctcttcctcctccaacTTTAACCCAATCGGCAGCGGCCCTCCTCACATTCCCGACCAATCAGCGTTTTACGTCCCCAAATGTCTACACTGCAACCTACCAGCAGCAGCCCTCGGCTAACCAATAAAAGCAGGAAAAATCCACAGCCAGCCCCCATCCACCAGCCAACTAATCACCTCGCAGCATCTGGCCAGTCCTTTTCAGCCAAATCTGCCTACCCGGCCTACAGTCTACCTCCCCTTCGTCATTTCTAGCTTGTTGAAAACCAAACGACTAGTAAGTTTTACCTGCTTCATACAGTACACTGCTGATTACAAATTTAAAAGTGAAGAGAAAGCTGCTTTAAAAAAGGTTATCCTTTTTTATTTGAATCAAACAGGATTGATATTTCTCCCTCATTACTGTAATCCGTTGATTTAAAGGGGAATGGACATTTTTGAGAAACATTAATTATTAATCTGTGAAGGTCTTTCTAATTGTTCAAAGGAGCTTTTCTGATCAGTGCTTTCCCTGGTTTAGGTCGCAGTGGTCCCATCTTGTGTGTGCTTTGCACTTGTGCTCAATATGTAGCCTTGAATTTACTGCAGCATTGAGAGCATTCTTACCCAATTTTTGACCATTAATTATGTTACAACCCTCCATTTTCTTACCCCTTCCCATTTGGTATAATTGCACTTCTCTTTCCGAAGCATTTTTTTGTCATTCACTCAGCTGGCAGTATTAACTAACCATGGCCTTTTATGGGAGGCGATGACTGAATTTCAGATTACAAATGCCTTATCTGCAGTCACCCATTCCCatccctttggggggggggggggggtgtaatagaCATTAACTTGGTTCCCCCAGAGGGGCAGTTTTTGGTGGGGACTGGGACTGTAGGGTTTACTTCAGGGTAATTTGGGGGTTGGATGGGTTTGGAATCAATGGGCCACCAATGTATCATGCTCTGCTTTTAACATCCTCTTATTCCCCCCTCCCCAGATCCCCACGTAGGAGGAGCTTCAGCCGCAGCCGAAGCAGGTCTCTCtccagagacaggaagagggagagatcTTTGTCCCGGGACAGGAACCACAAACCCTCAAGATCATTTTCCCGATCAAGGAGCCGCTCCAGGTCTACGGAGAGAAAGTAAGGAAATGCATGGCAGTCGAGTTTGACGGCAAAGAAGATGAAtgaactttcttttttttttacggaTATTTTAGCGGTTTCATTTTTGCTTCTCTGTGACATGTAAGGTATCCAATTCCTCTGTATTTTGTAAATAAGTTGGTATGCAGGTGTAACGCATGACTAAAATGGTTGTTAGTCCTGTTAATGCCAAGACATACCGTAGTTGTCCCCAAGCAGTATTCCATTTCATCAATCATTATAAGCGTTCTCTATTTGTCCATGAGTACCAGCTCACAGAAACACACCATTCTAAATAGTCTAGTGCTCAAGTCATGTTCCATGTCTGCAAGATTAGTGTGTCTGGATGTGGTGGAAGGCTATGGTCAGCTATCCTATTGTCGGTTAATATACCGATATGTTTTCTATCGACCTCTAGGACTTCCACTATTCTTCCAGTTCCTGTTGGTAAAGGTTTGTCTTTGCAAATAACGGCACCCTTATTTTGTCTACAATAGCCCACTGTTTTTCTTTTCCTTGATATTTGTACTACTTATGTTCTCTGAATTAAACTAGTTGTAAAAAGGCTTCTTAC

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569327.2 False 1306 mRNA 0.46 7 63658373 63663255
TU1686655 True 2953 TUCP 0.45 6 63658444 63663254

Neighbor

gene id symbol gene type direction distance location
LOC118940486 NA coding upstream 77784 63574560 ~ 63580589 (+)
LOC110494349 LOC106565665 coding upstream 114892 63516736 ~ 63543481 (+)
LOC110494347 LOC106565667 coding upstream 187124 63466101 ~ 63471249 (+)
LOC110494344 LOC106583073 coding upstream 285819 63356672 ~ 63372554 (+)
LOC110494341 LOC106565672 coding upstream 392860 63249564 ~ 63265513 (+)
cdkn1a LOC106565657 coding downstream 2593 63665848 ~ 63671434 (+)
tmcc2 LOC106565656 coding downstream 20788 63684043 ~ 63691033 (+)
bysl bysl coding downstream 38823 63702078 ~ 63705600 (+)
dstyk LOC106565654 coding downstream 77107 63740362 ~ 63779877 (+)
LOC110494364 LOC106565650 coding downstream 214984 63878239 ~ 63883527 (+)
G1474803 NA non-coding upstream 7081 63651034 ~ 63651292 (+)
G1474725 NA non-coding upstream 12964 63645011 ~ 63645409 (+)
G1474650 NA non-coding upstream 112778 63543506 ~ 63545595 (+)
G1474648 NA non-coding upstream 143957 63514147 ~ 63514416 (+)
G1474645 NA non-coding upstream 151537 63506409 ~ 63506836 (+)
G1474814 NA non-coding downstream 4220 63667475 ~ 63667700 (+)
G1474813 NA non-coding downstream 9645 63672900 ~ 63673428 (+)
G1474819 NA non-coding downstream 14507 63677762 ~ 63678148 (+)
G1474827 NA non-coding downstream 28549 63691804 ~ 63694554 (+)
G1474159 NA other upstream 440779 63216948 ~ 63217594 (+)
G1473177 NA other upstream 947237 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 959558 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 2101335 61555873 ~ 61558328 (+)
G1471723 LOC100380707 other upstream 2659310 60972478 ~ 60999063 (+)
G1475820 NA other downstream 900119 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 944999 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1092066 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1640162 65303417 ~ 65304128 (+)

Expression


Co-expression Network