cdkn1a (LOC106565657)


Basic Information

Item Value
gene id cdkn1a
gene name LOC106565657
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63665848 ~ 63671434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569330.2
TTAAATGGACCGCCCATTCCCAGAAATTCGTCAATCGTTCAAcgcgatgattgtgttttcagccaccggtagcGTAACCAGAACAACCATGGCCAGTCGTAAGCACATCCTGAGCTCTCTGGGGAAAAGTCCTGCCAGGCAGAACCTGTTTGGCCCAGTTGACCGTGAGCAGCTGCAGCAGGAGTACCAGGACACCCTGCGCAGAGACCTGGAGGACGCCTGTCGCCGCTGGGGCTTCGACTTCCTGTCAGATAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAAGAGGTACCGGGCACCAAGGTGCCTCTCCTCTACCTGCCCTACCTGTTGAGTCAGGGGGAGGCACAGAAGATCAGAGGGCCGGCAGCATCCACAGGGAGGGTCAGGGCGGGGCCATGGCACCGTGGCAAGGAAAACATCCCTTGCACCCCTGAGAAGTACAGAGCCAACCTCCAGAACCTGGAGAAACCGCAAGACAAGAACGAGAACAAACTGAAGAGGAAACAGACCAACCTCACAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGTCGCTTAAGTCAGGCCGGTGATTTCAGAGACACAGTCACAGCTGCCAGGGAGCCAACAGTCGGACAAAATCACAGCAAGCACTACTTCTCTCAGGAACCCACACGCTGAATAGActgagtacatacagtacacttaCCAGGAGGAATACATAACCAATCCTCTAAACAAACACAGTGAAAAATGAAACAACCTATTTTATTGCATCCATTACCGATGCatactgttttatttttttatccatgTAGGTTAACCGATGTACAATTGATTTCAATGTAAGGGGGCTTGTGTTCTCCCTGTGGTAAGGGAGGGACATTCTAATGGTGCATCCATGACCATTTGTGAGTCATGAAAGAACATCCTCTGCACCTTTATGACCGTTTAGTGTAAGGAAGACTTGAACATCTAAGTCTGGACAGTTAAGGTCCTGCATTCCACAGCACTGATATAGACCAATCGAAACCATGCCTCTGGGTCTACGCATAAATCGTCTTGTTTTGATGACATGTTGAAATTCTGAAACCATACTGTTTACGGTGCTGAGTTTGAATCTACTGTAATATGGTGTCACATTGAGAGGACGCTTGTAAAAAATGACCGCAACAACACAATAGTCTTCAACAGTCTTCCCAGTTCAAATATCCAAATGTATGGATTGATGTTTTTTTCATTATGATGTGTCTCTCATGAAGAGGGCCAGGAATCATGTTATTGTCTGTCATTTGCAAGCACTTCCTTTCCAATGTATGTGTTGTTGTACATGAGATTTCACAATTTAAATATGTGTCTCAACATGTACTCATAGGAATCTACTTGAAGGGTACTGCTCTGCATAAAATTATGCAAACTCCTGTATAGAAATGgcactcttttttttttctcacctttttatttaagaacaaattcttattttcaatgacggttaggaacattgggttaaaactgccttgttcaggggcagaattacagatttttaccttgtcagctcggggttttgatcttgcaaacttccggttacttgtccaatgctctaaacactaggctacctgccacccaatgtCCCCCTTTCTACCTAACTAGGGCTTCTTGCTATAATACTCTTGGGAATTTGTTGATAGGGACCTCTGCTATGTTCTTTCAAGcttttcaagtatttttacaaAGTCTATTTAGCATCTGAACACAAAGCCAGACATTCACGTTTCCTTAGATACAGTGAGGGGGAAATTTGATCCCCTACTGATTTTGttcgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtttatttgaacagtgagagacagcataacaa
>XM_021569331.2
GTGTGTCTTTCATAAGTCTGAACCGCAGcctttgactactttaaaatggctgAAGCATGGGGGAAGGTGCTGCCGATGTTAAAATTGCcatttggccactagaggcctctatcgtTCTCTACTATAAAACCCCACTTCTGCATCACTAGAACACTGAGAAAGGTATCGAGCAAAGAGAAGCAGCCCTCAGTGAGGGTTTGAGTTTATTTAGTTGTGTCACAAGGATTTCGTTTTGAGAAAATTGGTATGCTAAGAAAAAGTTTACTTAACGTTGGCTAACGTCGTTTGTTTAATTTGATCTTCAAAGAGTAACCCGCATAAACCTAAAACGGGACCTTTGCCTGACGTTTACATTAGGCTAGTTTAAATAACCAGAACAACCATGGCCAGTCGTAAGCACATCCTGAGCTCTCTGGGGAAAAGTCCTGCCAGGCAGAACCTGTTTGGCCCAGTTGACCGTGAGCAGCTGCAGCAGGAGTACCAGGACACCCTGCGCAGAGACCTGGAGGACGCCTGTCGCCGCTGGGGCTTCGACTTCCTGTCAGATAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAAGAGGTACCGGGCACCAAGGTGCCTCTCCTCTACCTGCCCTACCTGTTGAGTCAGGGGGAGGCACAGAAGATCAGAGGGCCGGCAGCATCCACAGGGAGGGTCAGGGCGGGGCCATGGCACCGTGGCAAGGAAAACATCCCTTGCACCCCTGAGAAGTACAGAGCCAACCTCCAGAACCTGGAGAAACCGCAAGACAAGAACGAGAACAAACTGAAGAGGAAACAGACCAACCTCACAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGTCGCTTAAGTCAGGCCGGTGATTTCAGAGACACAGTCACAGCTGCCAGGGAGCCAACAGTCGGACAAAATCACAGCAAGCACTACTTCTCTCAGGAACCCACACGCTGAATAGActgagtacatacagtacacttaCCAGGAGGAATACATAACCAATCCTCTAAACAAACACAGTGAAAAATGAAACAACCTATTTTATTGCATCCATTACCGATGCatactgttttatttttttatccatgTAGGTTAACCGATGTACAATTGATTTCAATGTAAGGGGGCTTGTGTTCTCCCTGTGGTAAGGGAGGGACATTCTAATGGTGCATCCATGACCATTTGTGAGTCATGAAAGAACATCCTCTGCACCTTTATGACCGTTTAGTGTAAGGAAGACTTGAACATCTAAGTCTGGACAGTTAAGGTCCTGCATTCCACAGCACTGATATAGACCAATCGAAACCATGCCTCTGGGTCTACGCATAAATCGTCTTGTTTTGATGACATGTTGAAATTCTGAAACCATACTGTTTACGGTGCTGAGTTTGAATCTACTGTAATATGGTGTCACATTGAGAGGACGCTTGTAAAAAATGACCGCAACAACACAATAGTCTTCAACAGTCTTCCCAGTTCAAATATCCAAATGTATGGATTGATGTTTTTTTCATTATGATGTGTCTCTCATGAAGAGGGCCAGGAATCATGTTATTGTCTGTCATTTGCAAGCACTTCCTTTCCAATGTATGTGTTGTTGTACATGAGATTTCACAATTTAAATATGTGTCTCAACATGTACTCATAGGAATCTACTTGAAGGGTACTGCTCTGCATAAAATTATGCAAACTCCTGTATAGAAATGgcactcttttttttttctcacctttttatttaagaacaaattcttattttcaatgacggttaggaacattgggttaaaactgccttgttcaggggcagaattacagatttttaccttgtcagctcggggttttgatcttgcaaacttccggttacttgtccaatgctctaaacactaggctacctgccacccaatgtCCCCCTTTCTACCTAACTAGGGCTTCTTGCTATAATACTCTTGGGAATTTGTTGATAGGGACCTCTGCTATGTTCTTTCAAGcttttcaagtatttttacaaAGTCTATTTAGCATCTGAACACAAAGCCAGACATTCACGTTTCCTTAGATACAGTGAGGGGGAAATTTGATCCCCTACTGATTTTGttcgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtttatttgaacagtgagagacagcataacaa
>XM_021569332.2
TAATAGAAGCCTCTGCTTCCCTTAGGGTAAACTTTGTTATTGCAAGGGAAGGTTCTTTACCATGAGAGTGCTCTGTGGTCATAGAGCAAGAATATGAGGCCTGGGATTTGACACTCAACACACCTGAACCCCTATTTAACCATTGTCTGACAGGGAAATAGATAGAAAATTGTGAAACATGACAATAGTGTCAGTTGATAGTAGTGGTACATTCAGACTACTTATGTAATTAcatgaaatatgtttttcttAAATTATGGATGAACACTGGTGCCTAGTAGTTACTGTACTACAGTCATAAGGGTTGATGTTCAGGACTTGTCTCTACATGTCCATAGAGCTTTGTCCAGACATGTACTAGATCAGGAAAGTAGGAAGGCTTTGTGAATCACTGTCTGATGGCTGTTAAATACAACTGCAGCGTTCTCAATACACAGTCCAGTTCCTCTGTTACACATATGAAGTAAGTTACAATTAAGATTTTGAGAGAGGTTTACTTGTGCATAAATGAACCAGAACAACCATGGCCAGTCGTAAGCACATCCTGAGCTCTCTGGGGAAAAGTCCTGCCAGGCAGAACCTGTTTGGCCCAGTTGACCGTGAGCAGCTGCAGCAGGAGTACCAGGACACCCTGCGCAGAGACCTGGAGGACGCCTGTCGCCGCTGGGGCTTCGACTTCCTGTCAGATAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAAGAGGTACCGGGCACCAAGGTGCCTCTCCTCTACCTGCCCTACCTGTTGAGTCAGGGGGAGGCACAGAAGATCAGAGGGCCGGCAGCATCCACAGGGAGGGTCAGGGCGGGGCCATGGCACCGTGGCAAGGAAAACATCCCTTGCACCCCTGAGAAGTACAGAGCCAACCTCCAGAACCTGGAGAAACCGCAAGACAAGAACGAGAACAAACTGAAGAGGAAACAGACCAACCTCACAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGTCGCTTAAGTCAGGCCGGTGATTTCAGAGACACAGTCACAGCTGCCAGGGAGCCAACAGTCGGACAAAATCACAGCAAGCACTACTTCTCTCAGGAACCCACACGCTGAATAGActgagtacatacagtacacttaCCAGGAGGAATACATAACCAATCCTCTAAACAAACACAGTGAAAAATGAAACAACCTATTTTATTGCATCCATTACCGATGCatactgttttatttttttatccatgTAGGTTAACCGATGTACAATTGATTTCAATGTAAGGGGGCTTGTGTTCTCCCTGTGGTAAGGGAGGGACATTCTAATGGTGCATCCATGACCATTTGTGAGTCATGAAAGAACATCCTCTGCACCTTTATGACCGTTTAGTGTAAGGAAGACTTGAACATCTAAGTCTGGACAGTTAAGGTCCTGCATTCCACAGCACTGATATAGACCAATCGAAACCATGCCTCTGGGTCTACGCATAAATCGTCTTGTTTTGATGACATGTTGAAATTCTGAAACCATACTGTTTACGGTGCTGAGTTTGAATCTACTGTAATATGGTGTCACATTGAGAGGACGCTTGTAAAAAATGACCGCAACAACACAATAGTCTTCAACAGTCTTCCCAGTTCAAATATCCAAATGTATGGATTGATGTTTTTTTCATTATGATGTGTCTCTCATGAAGAGGGCCAGGAATCATGTTATTGTCTGTCATTTGCAAGCACTTCCTTTCCAATGTATGTGTTGTTGTACATGAGATTTCACAATTTAAATATGTGTCTCAACATGTACTCATAGGAATCTACTTGAAGGGTACTGCTCTGCATAAAATTATGCAAACTCCTGTATAGAAATGgcactcttttttttttctcacctttttatttaagaacaaattcttattttcaatgacggttaggaacattgggttaaaactgccttgttcaggggcagaattacagatttttaccttgtcagctcggggttttgatcttgcaaacttccggttacttgtccaatgctctaaacactaggctacctgccacccaatgtCCCCCTTTCTACCTAACTAGGGCTTCTTGCTATAATACTCTTGGGAATTTGTTGATAGGGACCTCTGCTATGTTCTTTCAAGcttttcaagtatttttacaaAGTCTATTTAGCATCTGAACACAAAGCCAGACATTCACGTTTCCTTAGATACAGTGAGGGGGAAATTTGATCCCCTACTGATTTTGttcgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtttatttgaacagtgagagacagcataacaa
>XM_021569329.2
AATAGAAGCCTCTGCTTCCCTTAGGGTAAACTTTGTTATTGCAAGGGAAGGTTCTTTACCATGAGAGTGCTCTGTGGTCATAGAGCAAGAATATGAGGCCTGGGATTTGACACTCAACACACCTGAACCCCTATTTAACCATTGTCTGACAGGGAAATAGATAGAAAATTGTGAAACATGACAATAGTGTCAGTTGATAGTAGTGGTACATTCAGACTACTTATGTAATTAcatgaaatatgtttttcttAAATTATGGATGAACACTGGTGCCTAGTAGTTACTGTACTACAGTCATAAGGGTTGATGTTCAGGACTTGTCTCTACATGTCCATAGAGCTTTGTCCAGACATGTACTAGATCAGGAAAGTAGGAAGGCTTTGTGAATCACTGTCTGATGGCTGTTAAATACAACTGCAGCGTTCTCAATACACAGTCCAGTTCCTCTGTTACACATATGAAAACCAGAACAACCATGGCCAGTCGTAAGCACATCCTGAGCTCTCTGGGGAAAAGTCCTGCCAGGCAGAACCTGTTTGGCCCAGTTGACCGTGAGCAGCTGCAGCAGGAGTACCAGGACACCCTGCGCAGAGACCTGGAGGACGCCTGTCGCCGCTGGGGCTTCGACTTCCTGTCAGATAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAAGAGGTACCGGGCACCAAGGTGCCTCTCCTCTACCTGCCCTACCTGTTGAGTCAGGGGGAGGCACAGAAGATCAGAGGGCCGGCAGCATCCACAGGGAGGGTCAGGGCGGGGCCATGGCACCGTGGCAAGGAAAACATCCCTTGCACCCCTGAGAAGTACAGAGCCAACCTCCAGAACCTGGAGAAACCGCAAGACAAGAACGAGAACAAACTGAAGAGGAAACAGACCAACCTCACAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGTCGCTTAAGTCAGGCCGGTGATTTCAGAGACACAGTCACAGCTGCCAGGGAGCCAACAGTCGGACAAAATCACAGCAAGCACTACTTCTCTCAGGAACCCACACGCTGAATAGActgagtacatacagtacacttaCCAGGAGGAATACATAACCAATCCTCTAAACAAACACAGTGAAAAATGAAACAACCTATTTTATTGCATCCATTACCGATGCatactgttttatttttttatccatgTAGGTTAACCGATGTACAATTGATTTCAATGTAAGGGGGCTTGTGTTCTCCCTGTGGTAAGGGAGGGACATTCTAATGGTGCATCCATGACCATTTGTGAGTCATGAAAGAACATCCTCTGCACCTTTATGACCGTTTAGTGTAAGGAAGACTTGAACATCTAAGTCTGGACAGTTAAGGTCCTGCATTCCACAGCACTGATATAGACCAATCGAAACCATGCCTCTGGGTCTACGCATAAATCGTCTTGTTTTGATGACATGTTGAAATTCTGAAACCATACTGTTTACGGTGCTGAGTTTGAATCTACTGTAATATGGTGTCACATTGAGAGGACGCTTGTAAAAAATGACCGCAACAACACAATAGTCTTCAACAGTCTTCCCAGTTCAAATATCCAAATGTATGGATTGATGTTTTTTTCATTATGATGTGTCTCTCATGAAGAGGGCCAGGAATCATGTTATTGTCTGTCATTTGCAAGCACTTCCTTTCCAATGTATGTGTTGTTGTACATGAGATTTCACAATTTAAATATGTGTCTCAACATGTACTCATAGGAATCTACTTGAAGGGTACTGCTCTGCATAAAATTATGCAAACTCCTGTATAGAAATGgcactcttttttttttctcacctttttatttaagaacaaattcttattttcaatgacggttaggaacattgggttaaaactgccttgttcaggggcagaattacagatttttaccttgtcagctcggggttttgatcttgcaaacttccggttacttgtccaatgctctaaacactaggctacctgccacccaatgtCCCCCTTTCTACCTAACTAGGGCTTCTTGCTATAATACTCTTGGGAATTTGTTGATAGGGACCTCTGCTATGTTCTTTCAAGcttttcaagtatttttacaaAGTCTATTTAGCATCTGAACACAAAGCCAGACATTCACGTTTCCTTAGATACAGTGAGGGGGAAATTTGATCCCCTACTGATTTTGttcgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtttatttgaacagtgagagacagcataacaa
>TU1686663
GTAAAGAATGTGGTTCCTTGtcaaaaatgtatacatttagctTACAGTTACATAAATATAGCTTGCGTAATTATCTCCTAAGGGAGTAATAGAAGCCTCTGCTTCCCTTAGGGTAAACTTTGTTATTGCAAGGGAAGGTTCTTTACCATGAGAGTGCTCTGTGGTCATAGAGCAAGAATATGAGGCCTGGGATTTGACACTCAACACACCTGAACCCCTATTTAACCATTGTCTGACAGGGAAATAGATAGAAAATTGTGAAACATGACAA
>TU1686658
AAACATCCCTTGCACCCCTGAGAAGTACAGAGCCAACCTCCAGAACCTGGAGAAACCGCAAGACAAGAACGAGAACAAACTGAAGAGGAAACAGACCAACCTCACAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGTCGCTTAAGTCAGGCCGGTGATTTCAGAGACACAGTCACAGCTGCCAGGGAGCCAACAGTCGGACAAAATCACAGCAAGCACTACTTCTCTCAGGAACCCACACGCTGAATAGActgagtacatacagtacacttaCCAGGAGGAATACATAACCAATCCTCTAAACAAACACAGTGAAAAATGAAACAACCTATTTTATTGCATCCATTACCGATGCatactgttttatttttttatccatgTAGGTTAACCGATGTACAATTGATTTCAATGTAAGGGGGCTTGTGTTCTCCCTGTGGTAAGGGAGGGACATTCTAATGGTGCATCCATGACCATTTGTGAGTCATGAAAGAACATCCTCTGCACCTTTATGACCGTTTAGTGTAAGGAAGACTTGAACATCTAAGTCTGGACAGTTAAGGTCCTGCATTCCACAGCACTGATATAGACCAATCGAAACCATGCCTCTGGGTCTACGCATAAATCGTCTTGTTTTGATGACATGTTGAAATTCTGAAACCATACTGTTTACGGTGCTGAGTTTGAATCTACTGTAATATGGTGTCACATTGAGAGGACGCTTGTAAAAAATGACCGCAACAACACAATAGTCTTCAACAGTCTTCCCAGTTCAAATATCCAAATGTATGGATTGATGTTTTTTTCATTATGATGTGTCTCTCATGAAGAGGGCCAGGAATCATGTTATTGTCTGTCATT

Function

NR:

description
cyclin-dependent kinase inhibitor 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569330.2 False 1887 mRNA 0.45 3 63665848 63671434
XM_021569331.2 False 2181 mRNA 0.44 3 63666760 63671434
XM_021569332.2 False 2322 mRNA 0.43 3 63668521 63671434
XM_021569329.2 False 2274 mRNA 0.43 3 63668522 63671434
TU1686663 False 271 lncRNA 0.38 1 63668435 63668705
TU1686658 True 863 lncRNA 0.42 2 63669802 63670827

Neighbor

gene id symbol gene type direction distance location
srsf3b LOC106565658 coding upstream 2593 63658373 ~ 63663255 (+)
LOC118940486 NA coding upstream 85259 63574560 ~ 63580589 (+)
LOC110494349 LOC106565665 coding upstream 122367 63516736 ~ 63543481 (+)
LOC110494347 LOC106565667 coding upstream 194599 63466101 ~ 63471249 (+)
LOC110494344 LOC106583073 coding upstream 293294 63356672 ~ 63372554 (+)
tmcc2 LOC106565656 coding downstream 12609 63684043 ~ 63691033 (+)
bysl bysl coding downstream 30644 63702078 ~ 63705600 (+)
dstyk LOC106565654 coding downstream 68928 63740362 ~ 63779877 (+)
LOC110494364 LOC106565650 coding downstream 206805 63878239 ~ 63883527 (+)
nbl1 nbl1 coding downstream 221564 63892998 ~ 63903875 (+)
G1474803 NA non-coding upstream 14556 63651034 ~ 63651292 (+)
G1474725 NA non-coding upstream 20439 63645011 ~ 63645409 (+)
G1474650 NA non-coding upstream 120253 63543506 ~ 63545595 (+)
G1474648 NA non-coding upstream 151432 63514147 ~ 63514416 (+)
G1474645 NA non-coding upstream 159012 63506409 ~ 63506836 (+)
G1474813 NA non-coding downstream 1466 63672900 ~ 63673428 (+)
G1474819 NA non-coding downstream 6328 63677762 ~ 63678148 (+)
G1474827 NA non-coding downstream 20370 63691804 ~ 63694554 (+)
G1474833 NA non-coding downstream 37458 63708892 ~ 63709124 (+)
G1474835 NA non-coding downstream 38262 63709696 ~ 63709960 (+)
G1474159 NA other upstream 448254 63216948 ~ 63217594 (+)
G1473177 NA other upstream 954712 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 967033 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 2108810 61555873 ~ 61558328 (+)
G1475820 NA other downstream 891940 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 936820 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1083887 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1631983 65303417 ~ 65304128 (+)
G1474814 NA non-coding upstream 735 63667475 ~ 63667700 (+)

Expression


Co-expression Network