tmcc2 (LOC106565656)


Basic Information

Item Value
gene id tmcc2
gene name LOC106565656
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63684043 ~ 63691033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569334.2
ACTGTCCCCCCCCCATCATCTGTGACTCAGCTCACGCAGCTGCGATAGAGCAGGGTGGCTAACGTttgagaaggggaaagagagggagggaaagaaagaaagagagagacgcagaggcaGACAGAGCAAGCGTACAATATACAAAAGAGTGcaagagcagagagagcgagagaaagagagatggaagacAGGGAGGCTGCAGACATCTTTGCTATCAACAATGGAGCATGAAGCTCTGCTGGATAAAAGCGAAGTGACAACGTTGTGCCTGCCTCCCTCAGCCAGCCATGGTGGCTCTGACAGTAACATCAGCTTGGATGGGGCCGGGGTGGGGGCTGAAGGTTCAGGGGTCGTCGATCCGCAACGAACACGGCTCGCTCTGGAGCACCTGCAGCAGAAGACCCTGAAGATCACAGAGCAGATTCGCATAGAACAGGAGGCGCGAGATGACAACGTAGCTGAGTACCTGAAGCTGGCCCACAACGCAGACAAGCTGCAGGCCTCGCGCATCAAACAGGTGTTTGAGAAGAAGAACCAGAAGTCTGCACAGACCATCGCCCACCTGCATAAGAAGCTAGATCACTACCACAAGAAGCTAAAGGAGATAGagcagAATGGTCCAGCTCGTCAGCCTAAGGATGTGCTGCGGGACATGCAACAGGGGCTGAAGGACATGGGGGCCAATGTACGAGCAGGGTTCCATGGCTTTGGCGGGGGTATGGTGGATGGGGTCAAAGGAGGGGTGGAAGGGGTCAAAGGAGCTGTGGTGTCTAAGCCACGGGAGTTCGCCAGCTTGATCCGCAACAAATTTGGCAGTGCAGACAACATCTCCCACCTCATAGAGGACGGGGTGGGAGGGCACTCGGAGGATGTGCCTGCTCAAAGAGCCCTGAGTGGCAGTGCCACCCTGGTCTCCAGCCCCAAGTATGGTAGTGATGACGAGTGCTCCAGTGCCTCCTCTGGCTCAGCACCAGGCAGTCACTCAGGTTGGGCCGGGGGAGGAGGTGGGATGTTGGGGCATGGGCAGGCTGGCCTGGGGAGCCCCAGATTGGAagggcaccaccaccaccaccaccacatccacAGCTCCTGGGACACTCTGCTGGAAGGCCTGCAGGAGATCAAGGCCAGCCAAGCCCACATGGAGGATACCATCGAGGACATGAAGAGTCAGCTGCAGAGTGACTACTCCTACATGACCCAGTGCCTACAGGAGGAGAGATACAGGTACGAGCGACTGGAAGAGCAGCTGAATGACTTGACAGAGCTGCACCAGAACGAGATGACTAATCTGAAACAGGAGCTGGCCAGCATAGAGGAGAAAGTGGCCTACCAGTCCTATGAGAGAGCCAGAGACATTCAGGAAGCAGTGGAGTCGTGCCTGACTCGCATCACTAAATTGGagctccagcagcagcagcagcaggtggTGCAGTTGGAGGGTGTGGAGAACGCCAACGCCCGTGCCTTACTGGGCAAACTCATCAACATAATCCTGGCACTCATGGCTGTAGTGCTGGTCTTTGTCTCCACCCTGGCCAACTTCATCACCCCACTCATGAAGACCCGAGCACGGGTGGCCGCCACGGTCATGCTGGCTCTTTTCCTGTTCATCCTCTGGAAGCACTGGGACTTCCTGGAGCTGTGGCTACTGCCCACCTGAGCTCCCCACAGCCAATCACCCACTCCGCTGTGTCTGAGTGACCAGAATGTGGACAGAGGGACCACATTGATACACTAAGCTGCCCCAGACAAACTAAAAGTCTGGAACTCAGTCATATTTCTGAAAGGAAACCGTTGCACTTTTTTCATAGGGTTTATGCTTGGAGAGTTGAACTTATGAGTGTTGTAAGGCACAAAACCTTTTCTTTACAAAGCAACTGACGAAGACTCCCGTTGGATGGCAGATGGTGGCCATTTTTGGTTGAGAGACTTCTTAGGAGGTGATTTAATGGTGATTACAAGGAACCCGAGAAACTATCTGCCTGGTCGCTTGGCAACTCAagcattttctctttctcttgacTAATCTAGTGGCGTCAACTCACCATCGTAGTCACTATGATTTCATTACAATTTGGGAATTAATGTTGAAATTCTTTGACACATCTCAAAATTGTAGTGTAGGCCATCACTTAAAAATGATAATAGATAGAATAACAAATTATGCTTTGCTAAACCATGTTTGCTGTTACAGTTCCTTTGTACTGAGCCAATTGTATATTTGGAGGACATGGCTTAGCAAAAGGATTGCTTTTTTTCTGAATGTTAGGGTATGTACTACTCATGCATGTCCTCACGTGTGCATTTGTACCTGTGTGATGCACTTGGCATGAGTAACATTCCAACACTTACAGAAATACACGTTGCTCTTTTCTCGGTATTCTGTTGTCTATAGACAGTTTGTACCTAAATGTTCTTCTCCATATTAATTCTAAAACAGTCAACTAAATCACTTCTGGtgtttaaactacactttttggGTGCATCAATCGTTTGTGTCTCTTATGTGTGATGTAAAGGAGAACTTGAGGGCCAGGATGTATTCTGGTGAGATGGATCCTCACAACTACTGAATGATCTATTAGCTATTCTGAGCATCAATGCCATTTCATAACCACTGTTGTAGAGCAGCTAAGAAACTATGTAACGTCAGATCCACAGCATGTTTGACCATTGCTTCCATATTTCTATCCAGTTTGCTAACTCCATCACAACTGTTCCATTCTTAATAAATCAATTCTGAAACTATGCTAATGTTGCATGATATTGGAAAGTCGGATGGTTTTCATGGAACTGTGTATATCTAACAGTATCGACTACAGAGAGAAGAATAATAATACTAAGTAATCAGTGATAGCCTGTGATCTGTATCATGAAAAAGGTACTAATTTCAAAGACAGTCCCTCAATGTACCCCCCTGCAAAATTTAACTCCAGGCTGGTTCAATCTAAAGGTTTGTATATCAACTCCCTGTAGGAGACAGTTTGTTTAAGCAGTAACCTATAATAAGTGCATCTTTTTACTAATCGAGTGTCCATCATGGGtcagcagcgtagcctagtgttaagagcattggactagtaaccgaaaggttgc
>XM_021569335.2
GGCTGACATTGGGGAGGGGAGTGACATTGAGGAGAGGGGGTCTCGTGTGACCACGGGGAGGGTGGGGGGTGAAGGATGGGCCTCCAACATAGACCTGCAGTGGCACTGCCAATCTTGGATTAAACAGTATGCTGGATAAAAGCGAAGTGACAACGTTGTGCCTGCCTCCCTCAGCCAGCCATGGTGGCTCTGACAGTAACATCAGCTTGGATGGGGCCGGGGTGGGGGCTGAAGGTTCAGGGGTCGTCGATCCGCAACGAACACGGCTCGCTCTGGAGCACCTGCAGCAGAAGACCCTGAAGATCACAGAGCAGATTCGCATAGAACAGGAGGCGCGAGATGACAACGTAGCTGAGTACCTGAAGCTGGCCCACAACGCAGACAAGCTGCAGGCCTCGCGCATCAAACAGGTGTTTGAGAAGAAGAACCAGAAGTCTGCACAGACCATCGCCCACCTGCATAAGAAGCTAGATCACTACCACAAGAAGCTAAAGGAGATAGagcagAATGGTCCAGCTCGTCAGCCTAAGGATGTGCTGCGGGACATGCAACAGGGGCTGAAGGACATGGGGGCCAATGTACGAGCAGGGTTCCATGGCTTTGGCGGGGGTATGGTGGATGGGGTCAAAGGAGGGGTGGAAGGGGTCAAAGGAGCTGTGGTGTCTAAGCCACGGGAGTTCGCCAGCTTGATCCGCAACAAATTTGGCAGTGCAGACAACATCTCCCACCTCATAGAGGACGGGGTGGGAGGGCACTCGGAGGATGTGCCTGCTCAAAGAGCCCTGAGTGGCAGTGCCACCCTGGTCTCCAGCCCCAAGTATGGTAGTGATGACGAGTGCTCCAGTGCCTCCTCTGGCTCAGCACCAGGCAGTCACTCAGGTTGGGCCGGGGGAGGAGGTGGGATGTTGGGGCATGGGCAGGCTGGCCTGGGGAGCCCCAGATTGGAagggcaccaccaccaccaccaccacatccacAGCTCCTGGGACACTCTGCTGGAAGGCCTGCAGGAGATCAAGGCCAGCCAAGCCCACATGGAGGATACCATCGAGGACATGAAGAGTCAGCTGCAGAGTGACTACTCCTACATGACCCAGTGCCTACAGGAGGAGAGATACAGGTACGAGCGACTGGAAGAGCAGCTGAATGACTTGACAGAGCTGCACCAGAACGAGATGACTAATCTGAAACAGGAGCTGGCCAGCATAGAGGAGAAAGTGGCCTACCAGTCCTATGAGAGAGCCAGAGACATTCAGGAAGCAGTGGAGTCGTGCCTGACTCGCATCACTAAATTGGagctccagcagcagcagcagcaggtggTGCAGTTGGAGGGTGTGGAGAACGCCAACGCCCGTGCCTTACTGGGCAAACTCATCAACATAATCCTGGCACTCATGGCTGTAGTGCTGGTCTTTGTCTCCACCCTGGCCAACTTCATCACCCCACTCATGAAGACCCGAGCACGGGTGGCCGCCACGGTCATGCTGGCTCTTTTCCTGTTCATCCTCTGGAAGCACTGGGACTTCCTGGAGCTGTGGCTACTGCCCACCTGAGCTCCCCACAGCCAATCACCCACTCCGCTGTGTCTGAGTGACCAGAATGTGGACAGAGGGACCACATTGATACACTAAGCTGCCCCAGACAAACTAAAAGTCTGGAACTCAGTCATATTTCTGAAAGGAAACCGTTGCACTTTTTTCATAGGGTTTATGCTTGGAGAGTTGAACTTATGAGTGTTGTAAGGCACAAAACCTTTTCTTTACAAAGCAACTGACGAAGACTCCCGTTGGATGGCAGATGGTGGCCATTTTTGGTTGAGAGACTTCTTAGGAGGTGATTTAATGGTGATTACAAGGAACCCGAGAAACTATCTGCCTGGTCGCTTGGCAACTCAagcattttctctttctcttgacTAATCTAGTGGCGTCAACTCACCATCGTAGTCACTATGATTTCATTACAATTTGGGAATTAATGTTGAAATTCTTTGACACATCTCAAAATTGTAGTGTAGGCCATCACTTAAAAATGATAATAGATAGAATAACAAATTATGCTTTGCTAAACCATGTTTGCTGTTACAGTTCCTTTGTACTGAGCCAATTGTATATTTGGAGGACATGGCTTAGCAAAAGGATTGCTTTTTTTCTGAATGTTAGGGTATGTACTACTCATGCATGTCCTCACGTGTGCATTTGTACCTGTGTGATGCACTTGGCATGAGTAACATTCCAACACTTACAGAAATACACGTTGCTCTTTTCTCGGTATTCTGTTGTCTATAGACAGTTTGTACCTAAATGTTCTTCTCCATATTAATTCTAAAACAGTCAACTAAATCACTTCTGGtgtttaaactacactttttggGTGCATCAATCGTTTGTGTCTCTTATGTGTGATGTAAAGGAGAACTTGAGGGCCAGGATGTATTCTGGTGAGATGGATCCTCACAACTACTGAATGATCTATTAGCTATTCTGAGCATCAATGCCATTTCATAACCACTGTTGTAGAGCAGCTAAGAAACTATGTAACGTCAGATCCACAGCATGTTTGACCATTGCTTCCATATTTCTATCCAGTTTGCTAACTCCATCACAACTGTTCCATTCTTAATAAATCAATTCTGAAACTATGCTAATGTTGCATGATATTGGAAAGTCGGATGGTTTTCATGGAACTGTGTATATCTAACAGTATCGACTACAGAGAGAAGAATAATAATACTAAGTAATCAGTGATAGCCTGTGATCTGTATCATGAAAAAGGTACTAATTTCAAAGACAGTCCCTCAATGTACCCCCCTGCAAAATTTAACTCCAGGCTGGTTCAATCTAAAGGTTTGTATATCAACTCCCTGTAGGAGACAGTTTGTTTAAGCAGTAACCTATAATAAGTGCATCTTTTTACTAATCGAGTGTCCATCATGGGtcagcagcgtagcctagtgttaagagcattggactagtaaccgaaaggttgca
>TU1686672
GAGCAGGGTGGCTAACGTttgagaaggggaaagagagggagggaaagaaagaaagagagagacgcagaggcaGACAGAGCAAGCGTACAATATACAAAAGAGTGcaagagcagagagagcgagagaaagagagatggaagacAGGGAGGCTGCAGACATCTTTGCTATCAACAATGGAGCATGAAGCTCTGCTGGATAAAAGCGAAGTGACAACGTTGTGCCTGCCTCCCTCAGCCAGCCATGGTGGCTCTGACAGTAACATCAGCTTGGATGGGGCCGGGGTGGGGGCTGAAGGTTCAGGGGTCGTCGATCCGCAACGAACACGGCTCGCTCTGGAGCACCTGCAGCAGAAGACCCTGAAGATCACAGAGCAGATTCGCATAGAACAGGAGGCGCGAGATGACAACGTAGCTGAGTACCTGAAGCTGGCCCACAACGCAGACAAGCTGCAGGCCTCGCGCATCAAACAGGTGTTTGAGAAGAAGAACCAGAAGTCTGCACAGACCATCGCCCACCTGCATAAGAAGCTAGATCACTACCACAAGAAGCTAAAGGAGATAGagcagAATGGTCCAGCTCGTCAGCCTAAGGATGTGCTGCGGGACATGCAACAGGGGCTGAAGGACATGGGGGCCAATGTACGAGCAGG

Function

NR:

description
transmembrane and coiled-coil domains protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569334.2 False 3099 mRNA 0.49 5 63684043 63691032
XM_021569335.2 False 2993 mRNA 0.49 5 63684292 63691033
TU1686672 True 649 TUCP 0.54 3 63684090 63688090

Neighbor

gene id symbol gene type direction distance location
cdkn1a LOC106565657 coding upstream 12609 63665848 ~ 63671434 (+)
srsf3b LOC106565658 coding upstream 20788 63658373 ~ 63663255 (+)
LOC118940486 NA coding upstream 103454 63574560 ~ 63580589 (+)
LOC110494349 LOC106565665 coding upstream 140562 63516736 ~ 63543481 (+)
LOC110494347 LOC106565667 coding upstream 212794 63466101 ~ 63471249 (+)
bysl bysl coding downstream 11045 63702078 ~ 63705600 (+)
dstyk LOC106565654 coding downstream 49329 63740362 ~ 63779877 (+)
LOC110494364 LOC106565650 coding downstream 187206 63878239 ~ 63883527 (+)
nbl1 nbl1 coding downstream 201965 63892998 ~ 63903875 (+)
LOC110494366 LOC106565648 coding downstream 218007 63909040 ~ 63919556 (+)
G1474819 NA non-coding upstream 5895 63677762 ~ 63678148 (+)
G1474813 NA non-coding upstream 10615 63672900 ~ 63673428 (+)
G1474814 NA non-coding upstream 16343 63667475 ~ 63667700 (+)
G1474803 NA non-coding upstream 32751 63651034 ~ 63651292 (+)
G1474827 NA non-coding downstream 771 63691804 ~ 63694554 (+)
G1474833 NA non-coding downstream 17859 63708892 ~ 63709124 (+)
G1474835 NA non-coding downstream 18663 63709696 ~ 63709960 (+)
G1474846 NA non-coding downstream 34588 63725621 ~ 63725839 (+)
G1474849 NA non-coding downstream 38647 63729680 ~ 63729913 (+)
G1474159 NA other upstream 466449 63216948 ~ 63217594 (+)
G1473177 NA other upstream 972907 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 985228 62698503 ~ 62698815 (+)
LOC110494283 LOC106565563 other upstream 2127005 61555873 ~ 61558328 (+)
G1475820 NA other downstream 872341 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 917221 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1064288 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1612384 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1634844 65325877 ~ 65327163 (+)

Expression


Co-expression Network