bysl (bysl)


Basic Information

Item Value
gene id bysl
gene name bysl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63702078 ~ 63705600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569338.2
TATGTTTCGTCTCCGATAGGACGTCACTTCCGTTGGATAAAAAAAAAGCACGTGTGTTGACTGGAACTTTGGTGAGAATTTCCACATTAGCTACTTTATGAATTGTTAAACCAACTAGCTAGATTAATAGTACATTTCTAACAGGTCTGTATAATAAACTAGCACAGATGCCGAAAGTGAAGAAACCCAAATGTGGAGGTGGGGAGAAAAGTGGCGACGGAATGGTTGCGCTTGCTGACCAGATTCTTCAAGGGGATATGGTTCGAGTACATGGCCGAGTGAAGACCAGGGATCAACGGGGAGAAGATGAAGATGAGGACGAGTACGTGGACGAACGCCTATCAAGGAAGATCCTGGAGCAGGCACGAATCCAACAAGAAGAACTACAGACAGAATATGGTTTGGCACCAGAGGTCAAGAAAAAGCAAGCCACTGTTTTAGGGCCAGATTCTCAGGATGCAGACTCTGATGAGGAGTGGCCGGCACTGGGTGAAGCCGGGGCCGGTGAGGAGGCAGAGGCTAACTGTGGTACAGAAGTGGTGGTGGACCCAGAGGATGAGAAAGCTATGCAGATGTTCATGAACAAGAATCCTCCCATGAGACGAACTCTAGCAGACATCATCATGGAGAAGATcacagagaagcagacagaggTGGGGACAGTGATGTCTGAGGTGTCAGGAAGACCCATGCCCCAGCTGGACCCAAGGATCATTGAAGTGTACAAAGGTGTCAACAAGGTTCTGTCAAGATATCGTAGCGGCAAGCTGCCCAAAGCTTTCAAGATCATTCCAGCACTGTCAAACTGGGAGCAGGTTCTGTACTTGACAGAGCCTGAGACCTGGACTGCGGCTGCTATGTACCAGGCAACAAGAATCTTCTCATCCAATCTGAAGGAGCGAATGGCCCAACGGTTCTACAACTTGGTGCTACTGCCAAGGATACGAGATGACATTGCAGAGTATAAAAAACTAAACTTCCACCTGTACATGGCCCTGAAGAAGGCTCTTTTCAAGCCAGGGGCATGGTTCAAAGGCATCCTCATCCCGCTCTGTGAATCTGGAACATGTACTCTGAGGGAGGCTATCATCATTGGCAGCATACTCACTAAGTGCTCAATCCCTGTACTGCACTCCAGCGCTGCCATGCTGAAACTGGCAGAGATGGAATACAATGGAGCCAACAGCATCTTCCTGCGACTCTTACTGGATAAAAAATATGCCCTGCCCTTCCGTGTCCTGGATGCCCTGGTCGGCCACTTCCTGTCCTTCCGCAGTGAGAAGCGTGTCCTTCCTGTGCTGTGGCACCAGAGTCTGCTTACCCTGGCACAGCGCTACAAGGCCGACTTGGCATCCGAACAAAAGGCTGCTCTACTGGAGCTACTTAAGGTGCAGACACACCCCCAGATTTCTGCAGAGATCCGCCGGGAGCTGCAGAACTCAGAGTCCCGTGATCTGGAAACCGCTATGCCAGTCACAATGGCCATGGACTGAGTATGGAGCTGAGCAAGGCTGCACCCTCTCAGTCCCCacctttcccctctttctccccaacGTACCATCATTCACTAAACTGCCCACAACACATGCACATATGAACTGTTTTTCCCCTGCCAAATGCTCTATCATTGCTATGGGAGATAAGAGTAAAGGCCACGAGATGGATTACAGATTAACATTCATTCAACATCCTGACTATCAAAGTGATATTATGGAATTCCTTTCTGATGTGCAAGTGAGGATGTCATTTACAAACTGAAATACATAAATGTTGTAAACAGACATTACATTTATTGAGTGGAAATGATAGAGATGTGTTTGCCAGTTTTGAGGCAATGTCGGTTTCACAAGTAAAGATAATGTATAGCTGACTTGTTTGTATGACACCTACATTTCCAAAGGAATTTAGAGAAGCTACAGCACACTGACCCTTTTGgtggaaaaaaactattttcaaTGAGTGCATGTTTGTAACATGGTTAAGTAACTTAATGAAGGAAAATTATACAAAATACTATTCAAATGTTACTGTAAAAATTAACATTTTGAATAAATTATTTCCTTGGTTTAAAGTGAAA

Function

symbol description
bysl Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytoplasm and nucleolus. Is expressed in several structures, including alar plate midbrain region; musculature system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human BYSL (bystin like).

NR:

description
bystin isoform X1

GO: NA

KEGG:

id description
K14797 ENP1, BYSL; essential nuclear protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569338.2 True 2077 mRNA 0.46 7 63702078 63705600

Neighbor

gene id symbol gene type direction distance location
tmcc2 LOC106565656 coding upstream 11045 63684043 ~ 63691033 (+)
cdkn1a LOC106565657 coding upstream 30644 63665848 ~ 63671434 (+)
srsf3b LOC106565658 coding upstream 38823 63658373 ~ 63663255 (+)
LOC118940486 NA coding upstream 121489 63574560 ~ 63580589 (+)
LOC110494349 LOC106565665 coding upstream 158597 63516736 ~ 63543481 (+)
dstyk LOC106565654 coding downstream 34762 63740362 ~ 63779877 (+)
LOC110494364 LOC106565650 coding downstream 172639 63878239 ~ 63883527 (+)
nbl1 nbl1 coding downstream 187398 63892998 ~ 63903875 (+)
LOC110494366 LOC106565648 coding downstream 203440 63909040 ~ 63919556 (+)
LOC110494367 LOC106565647 coding downstream 337555 64043155 ~ 64052786 (+)
G1474827 NA non-coding upstream 7524 63691804 ~ 63694554 (+)
G1474819 NA non-coding upstream 23930 63677762 ~ 63678148 (+)
G1474813 NA non-coding upstream 28650 63672900 ~ 63673428 (+)
G1474814 NA non-coding upstream 34378 63667475 ~ 63667700 (+)
G1474833 NA non-coding downstream 3292 63708892 ~ 63709124 (+)
G1474835 NA non-coding downstream 4096 63709696 ~ 63709960 (+)
G1474846 NA non-coding downstream 20021 63725621 ~ 63725839 (+)
G1474849 NA non-coding downstream 24080 63729680 ~ 63729913 (+)
G1474852 NA non-coding downstream 27285 63732885 ~ 63733103 (+)
G1474159 NA other upstream 484484 63216948 ~ 63217594 (+)
G1473177 NA other upstream 990942 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 1003263 62698503 ~ 62698815 (+)
G1475820 NA other downstream 857774 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 902654 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 1049721 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1597817 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1620277 65325877 ~ 65327163 (+)

Expression


Co-expression Network