nbl1 (nbl1)


Basic Information

Item Value
gene id nbl1
gene name nbl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63892998 ~ 63903875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569354.2
TCGCCCAAAGACACAGCGGGACTCCTTTCTGGAGGCGCAGCCGCGCCTATACCCAAATCCAGCGACCAAAGCAAAGGCGAGATAAAGTTTGAGAGAACGGAGTAGTTTACAGCTTCACCgaaatgacagcctaccggtGAAACGTTTTTGGGGAGAAGAGGTGGAAACGGACTCCGGACGGGAGGGATAGAGCACGGACGGGAGGGGAGGGACCCAGTGCGCTGATGGACTGGAAGACAGATAGTGTGCATTAGAAActatctcctcatccctctccataTGACCGTCCCTCTCTGGCGGATGATGTAATTGTTTTCTATGAACCTTGCCTTTCTGAAAGCAGTTATATTTTCCATTTCCAAGTAGCAACTACAGCGCATAGACTCCACgcatctctcctgtctcctgcggGACGGGTGGCGAGGGAGGGTTGGGAGAGACGGGCGTTGGAGATCTAGTGAGGGGTCTCAGCAGGATATTGCTGCATTTCGGTGATTCCCAACGGTGCAGTCATGTGGAAAAGAATTGTGATTTGCTGCGCGCTGCTTGCGCTCTGTTCAGCAGCACCGCCCGCTCACATCAACCGTCTGGCGCTGTTCCCTGACAAGAGCGCTTGGTGCGAGGCCAAGAACATCACACAGATAGTCGGGCACACCGGCTGCCAGCCTCGCTCTATCCAAAACAGGGCATGTCTGGGGCAGTGCTTCAGCTACAGCGTCCCCAACACCTTCCCCCAGTCCACTGAGTCCCTGGTGCACTGTGACTCCTGCATGCCTGCACAGACTCAGTGGGAGGTGGTGACTTTGGACTGCCCGGGCAGTGATGATGCGCCTCGTGTGGATAAGCTGGTGGAGAGGATCCTCCACTGCAGCTGCCAGTCATGCAGTAAGGAGGGAGCCCAGGAGGGGGCACTGATGCAGCTATACCCATCAGAGAGTGCCCAAGACCCCCCTATCCTACCAGAGAGCCACCACAGTGGCACACACTCTcagcacgctcacacacacacagagccacacacacacacatctgatggAGGGTAGGTCGCTCGATCACCACtgacacttcctctctctccattcctgaTTCTTCTCCCAAACCTCTCCACAAGTTGTTTCTTCTACACACAGTTACAGCACTTGATGCATTTCCCTTCTCTTCCATCCAACCTCTGTTTCTACATTCAACAGCTTAAAAGCACTTTGAAAGTAAAACTTCACTTCACATGATAACTGCTTATAAAAGCACATGCAACCAAGCTCCCTCATGCTGTTCTCTTCACAAGACAACCACAGTATAAGTGAACACATACAAAGACACGAGCTTATCTAAACTGTTTTTGTCATCTGACTTCTCACTTAGGAGGACAACAAATATAACAatcctacacacacgcacatatgcaCCCAGGCATGCACTCTGACACTAGACTTTTGATGCTGTAGTCTTATATCTGTAAATCTGTCttgaaaaaatgtattaaaaaaaagcaTAGAGCTACAAAGTTTCTTGCCTTAATTTCTGTTTATCACCAATTTGCATTAGTATCTGACCTAATGCTATATGTTCCAATGATTGCTTTTCCAATGAGAATAAAGCTATTTTTGTTCAATCTTA
>XM_021569353.2
TACAGCCGCGGGGCAGTTGGTCGTTGCACAGGGATATTGAATTCTTTAGGAATGTTATTTGCCCGAAGGCACAGCAAAGCGTCTTCAATACTAAAAAGTCCATGGAAGTAAAACTGTATTGGTGGAAAGGTGCAGTCATGTGGAAAAGAATTGTGATTTGCTGCGCGCTGCTTGCGCTCTGTTCAGCAGCACCGCCCGCTCACATCAACCGTCTGGCGCTGTTCCCTGACAAGAGCGCTTGGTGCGAGGCCAAGAACATCACACAGATAGTCGGGCACACCGGCTGCCAGCCTCGCTCTATCCAAAACAGGGCATGTCTGGGGCAGTGCTTCAGCTACAGCGTCCCCAACACCTTCCCCCAGTCCACTGAGTCCCTGGTGCACTGTGACTCCTGCATGCCTGCACAGACTCAGTGGGAGGTGGTGACTTTGGACTGCCCGGGCAGTGATGATGCGCCTCGTGTGGATAAGCTGGTGGAGAGGATCCTCCACTGCAGCTGCCAGTCATGCAGTAAGGAGGGAGCCCAGGAGGGGGCACTGATGCAGCTATACCCATCAGAGAGTGCCCAAGACCCCCCTATCCTACCAGAGAGCCACCACAGTGGCACACACTCTcagcacgctcacacacacacagagccacacacacacacatctgatggAGGGTAGGTCGCTCGATCACCACtgacacttcctctctctccattcctgaTTCTTCTCCCAAACCTCTCCACAAGTTGTTTCTTCTACACACAGTTACAGCACTTGATGCATTTCCCTTCTCTTCCATCCAACCTCTGTTTCTACATTCAACAGCTTAAAAGCACTTTGAAAGTAAAACTTCACTTCACATGATAACTGCTTATAAAAGCACATGCAACCAAGCTCCCTCATGCTGTTCTCTTCACAAGACAACCACAGTATAAGTGAACACATACAAAGACACGAGCTTATCTAAACTGTTTTTGTCATCTGACTTCTCACTTAGGAGGACAACAAATATAACAatcctacacacacgcacatatgcaCCCAGGCATGCACTCTGACACTAGACTTTTGATGCTGTAGTCTTATATCTGTAAATCTGTCttgaaaaaatgtattaaaaaaaagcaTAGAGCTACAAAGTTTCTTGCCTTAATTTCTGTTTATCACCAATTTGCATTAGTATCTGACCTAATGCTATATGTTCCAATGATTGCTTTTCCAATGAGAATAAAGCTATTTTTGTTCAATCTTA

Function

symbol description
nbl1 Predicted to enable BMP binding activity and receptor ligand activity. Acts upstream of or within semicircular canal formation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; head; pharyngeal arch 3-7; pharynx; and semicircular canal. Orthologous to several human genes including MICOS10-NBL1 (MICOS10-NBL1 readthrough).

NR:

description
neuroblastoma suppressor of tumorigenicity 1-like isoform X1

GO:

id name namespace
GO:0060876 semicircular canal formation biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K19558 NBL1; neuroblastoma suppressor of tumorigenicity 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569354.2 False 1617 mRNA 0.50 4 63892998 63903875
XM_021569353.2 True 1242 mRNA 0.48 4 63894081 63903875

Neighbor

gene id symbol gene type direction distance location
LOC110494364 LOC106565650 coding upstream 9471 63878239 ~ 63883527 (+)
dstyk LOC106565654 coding upstream 113121 63740362 ~ 63779877 (+)
bysl bysl coding upstream 187398 63702078 ~ 63705600 (+)
tmcc2 LOC106565656 coding upstream 201965 63684043 ~ 63691033 (+)
cdkn1a LOC106565657 coding upstream 221564 63665848 ~ 63671434 (+)
LOC110494366 LOC106565648 coding downstream 5165 63909040 ~ 63919556 (+)
LOC110494367 LOC106565647 coding downstream 139280 64043155 ~ 64052786 (+)
LOC110494368 LOC106565646 coding downstream 149353 64053228 ~ 64056392 (+)
LOC110493238 NA coding downstream 153122 64056997 ~ 64058645 (+)
fndc10 LOC106565645 coding downstream 159895 64063770 ~ 64066586 (+)
G1474858 NA non-coding upstream 110069 63780589 ~ 63782929 (+)
G1474855 NA non-coding upstream 156518 63735944 ~ 63736480 (+)
G1474852 NA non-coding upstream 159895 63732885 ~ 63733103 (+)
G1474849 NA non-coding upstream 163085 63729680 ~ 63729913 (+)
G1474977 NA non-coding downstream 40244 63944119 ~ 63951085 (+)
G1474995 NA non-coding downstream 62485 63966360 ~ 63966573 (+)
G1475005 NA non-coding downstream 71471 63975346 ~ 63975546 (+)
G1475008 NA non-coding downstream 73793 63977668 ~ 63977920 (+)
srsf3b LOC106565658 other upstream 229744 63658373 ~ 63663255 (+)
G1474159 NA other upstream 675404 63216948 ~ 63217594 (+)
G1473177 NA other upstream 1181862 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 1194183 62698503 ~ 62698815 (+)
G1475820 NA other downstream 659499 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 704379 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 851446 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1399542 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1422002 65325877 ~ 65327163 (+)

Expression


Co-expression Network