LOC110494368 (LOC106565646)


Basic Information

Item Value
gene id LOC110494368
gene name LOC106565646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64053228 ~ 64056392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569358.2
ACAACCCGTATGAAGAATAGCAAGGGGCGCGGTTTACATACGGCCCATCCAATCGGTAGAGGCTGTACTGGAGTCCCGTGCTGGACTGGGCCTCGGTCTTGCCTGGTGTCATGCAACCGACAATTGAATATGTGATGGCGGCAGAAGACTTGAGAATTCCCGGGGAGGGAATTCTTATAGGGGATAAGATATACTCTGGTGTAACCCTAACTTTAGATAACTGTCTCCTGCCACTGGAGCGACTACAGCAGAGTCCGTCCGCTGAACATGGGCTCTCCGCGGATACCGAGGAGCAGCTGCGAATGCGGGGCTGTGAGTTGATACAGGCCGCGGGTATTCTGCTTAGACTCCCGCAGGTAGCCATGGCCACGGGGCAGATCCTTTTCCAGAGGTTCTACTATTGCAAATCGTTCGTCAGACACTGTGCAGAGATGGTTGCCATGGCTTGTGTGCACCTGGCTTCAAAGATCGAGGAGGAACCGCGCAGGGTACGAGATGTTCTCAATGTGTTCTACCACCTCAAACACAGCAAAGGCAAAAGGGCCCAGGTCCCCATGCCTTTGGATGCCAGCTACATCAGTGCCAAGGCTCAGGTGATCAAGACGGAGAGGAGAGTACTGAAGGAGCTGGGCTTCTGTGTGCATGTCAAACACCCCCACAAGATCATTGTGATGTACCTCCAGGTGCTGGAGTGTGAGAAGAACACCAAGCTGGTACAGACAGCTTGGAACTACATGAATGACAGTCTGAGGACAGATGTGTTCCTGAGGTTCAGTGCTGAGACCGTGGCCTGTGCCTGTATCTACCTGTCAGCCAGAACACTTCAGATCCCTCTGCCGGACCAGCCTCCCTGGTTCCTGCTGTTTGGTGCGTCTGAGGAGGACCTGAGGGAGATCTGTGGGCGGATCCTGAGGCTGTACTCACTGCCCAACGTCTCCCTCCCCAGTATGTTAAAAGAAGTGGACCAGTGTCACCTGGCCCTGGATGCACGCATCGCCAAGGCTAAGCTGGCAGGAGGGGGACTGCTGGCTGTGGGCACCCCCACCCTGGACGTCCCCTCCAGCTTCTCCCCTGCCTCCAAAGCAGCGTCGCCTGCTGTACCACAGACCAACAGGGAGTCTCCCCTAAATCAAGTCGCCCTAAAAAATGCCTGCCGGAAACTCACTAACGGAGACGAGAAGAAAAGAGGGAGTCGTAgtgatgagagaagagagactcAGTCCATGTCTCCTTCCAGAAGAAGACGCAGTCGCAGTGTCTCTTCTCCTTTgcgctctgtctctcccacccACCGCCAGAAAATCAGTCGCAGGGATAGAGAAAGGGAAAAAGAGCGGGAGCGTCGGCGGGAACGGGAGAGGGAGcggggaagaggaaggagagatgaataCTCACGTAGAAGATAACTCTCATAGGTGTTATCAAGGAAGAGCTATCGTAGATGACCTATGGAACAGCACATCATGGACCAAATACAAGCCAGACTTTCCAATGTTTTCACTTTTGTAGATTGTTTGTGTTACATTATAATTTGGGAAACTATGCTCTAAGATCATAGTCCAAAGCTTTTGTCTGAACAATATTTTTGAAATAAAAATGCTTTTAGATGA

Function

NR:

description
cyclin-L1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K23966 CCNL; cyclin L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569358.2 True 1610 mRNA 0.52 10 64053228 64056392

Neighbor

gene id symbol gene type direction distance location
LOC110494367 LOC106565647 coding upstream 442 64043155 ~ 64052786 (+)
LOC110494366 LOC106565648 coding upstream 133672 63909040 ~ 63919556 (+)
nbl1 nbl1 coding upstream 149353 63892998 ~ 63903875 (+)
LOC110494364 LOC106565650 coding upstream 169701 63878239 ~ 63883527 (+)
dstyk LOC106565654 coding upstream 273351 63740362 ~ 63779877 (+)
LOC110493238 NA coding downstream 605 64056997 ~ 64058645 (+)
fndc10 LOC106565645 coding downstream 7378 64063770 ~ 64066586 (+)
ssu72 ssu72l coding downstream 10379 64066771 ~ 64071414 (+)
LOC110494371 LOC106565644 coding downstream 18525 64074917 ~ 64079438 (+)
sdhb sdhb coding downstream 64129 64120521 ~ 64128339 (+)
G1475012 NA non-coding upstream 72374 63980619 ~ 63980854 (+)
G1475008 NA non-coding upstream 75308 63977668 ~ 63977920 (+)
G1475005 NA non-coding upstream 77682 63975346 ~ 63975546 (+)
G1474995 NA non-coding upstream 86655 63966360 ~ 63966573 (+)
G1474977 NA non-coding upstream 102143 63944119 ~ 63951085 (+)
G1475066 atad3 non-coding downstream 33365 64089757 ~ 64091921 (+)
G1475072 NA non-coding downstream 39313 64095705 ~ 64096426 (+)
G1475078 NA non-coding downstream 50840 64107232 ~ 64107471 (+)
G1475111 NA non-coding downstream 122864 64179256 ~ 64180301 (+)
G1475223 NA non-coding downstream 317153 64373545 ~ 64379198 (+)
tmcc2 LOC106565656 other upstream 365138 63684043 ~ 63691033 (+)
srsf3b LOC106565658 other upstream 389974 63658373 ~ 63663255 (+)
G1474159 NA other upstream 835634 63216948 ~ 63217594 (+)
G1473177 NA other upstream 1342092 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 1354413 62698503 ~ 62698815 (+)
G1475820 NA other downstream 506982 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 551862 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 698929 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1247025 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1269485 65325877 ~ 65327163 (+)

Expression


Co-expression Network