fndc10 (LOC106565645)


Basic Information

Item Value
gene id fndc10
gene name LOC106565645
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64063770 ~ 64066586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569359.2
CAAAAGACTACACACATCAGCCTTGAAGACTACATACAGCCTAACACCAAAtgtgggaaagaggagagggaggaaggacggATGGGTGGAAGGAAGGATGGAAAGGCACAAAAAAGTAACGGAAATGGTGTCAGGGAAATTAAGATTGGAGTGGGGATTTGAAATGATGACTCATGATGTAATTGACTGCTGATGACTAGGCTACAAACattctgacagacacacacaaacacacacttcctcACAACAACCATCAAAGAAAGGAGGACAAGACTGGGCCAAATGTGATTAAAAAGATAACTGCCGCGGTCCTCGTTCTCGAAAACCCAGACATATTGTTTTCGTGCTCTGCACCGGGGAGAGGCTACACCGCATTGTTGGTGTAAGACTGTTATGGAAGCCACATGACCCggtacctctctttctcttctcggATCTCCGCTGACAATAACGGCGCAGTCCACTATCAATTTGCACTAAATACAGTGAGAGTGAACCTGTAAAACGGGAAGACATGAGAGGCCAACCGCGGCTGTCCCTGGTCGCCTTCTCGGCAGTGCTTCTCTGTCTGTGTCGCGCAACAATCGCAGTTTCCAACCAGACACGCGGCGGCCGCGATGCGCAATTACCATCAGCGTCAGCATCTTCATCAGACGAGGGAAGCGAGAAGGACGTGGATGTCTCCCCAAACTCTGGCCAACACCATAACTACGGTATTGATTATTTCAGTAAGAATGAAACTATGAGCACACCAAAGCTGGAGGGGGACCTCAGCTATAGGAATGGCACTTCATCCATCAACATCAGCAGAGGCAATACAGGAACCACTGTGATATCTGGCAGGCCAGACCATGTGCAAGGTGAAACAAGGTGGGTCATGGCCATGGAGGGAGAAGTGGCACCAATATGTGCCTACCGGGTAACAGATGGGGGAATCGGGGGGCGGTTGTGTTTTCGACACACACAGCAGGGGTTCAAGTGTCATCATGGAGACTGCCGGACTGTTCCGTCTCCAGGAGGGTCCCTGGTGGCCAATGTTCTGACCAATGGTAGCGTGCTGCTACAGTGGACATACGAAGGTCTGAGGGGAGAGGCTCAAGGGACAACCAAAGGAAACACAGCTGGATATGACCTAGATAAACAAGAGACTAAGACTAGAGGAACAAGTGTAGAGGGACAGAAAGGGGCTCCTAGGACAGGGCTTGGGGTAGAGAGCAGGATTTTGATTGCACCACCAAAGAGGGTATTCAGTGGACGACGGGTCAGAAGAGGTGGGTTTGCGCTGAGCTGCTGGTGGAATGGGAGCTACACCCAGTTTGAGTGCGCTGGTCTTCATCTTGGCTCCGGTTGCAGGGACTTCCTGCTGACTGAGCTCCATGAGAACGTCCCCTACCGCATCTGCCTACATCCGCTGGCCTCCACCCTGACCCCACCGCCCCACTCAGGAGGAGCAGGCCAAAGACAGGACCTGGGAGACTGCTTGGAGTTCACTGTCTCACCATTGGGCATGCAGGACATTGTGATCGCCATGACAACAGTGGGAGGAGCCATCTGTGTGATGCTGGTCATCATCTGCCTGTTGGTGGCATACATCACTGAGAACATCATGAGCCCCACGACACAGCACTCACActccacataccacacacactctcaccaCTAATGTCactcacacacgcaaacacacgcacacacacgggcacacacttGTATCCTTGTTAAGCAATATCACACAAATGTATTTTACTCCCACATCTAAATCAATACACTAAAAACACATGTATGTAACATACAGTGATtgaacaaccacacacacataatagAAATCTCACACAGATTCAGGGCATCGCACCTTACACACGACTAAAATACATCATACCTGTGCAAGCTTGTGGAAGAACGATGAACTAAGCCTCCGAATAGACCACCACACTTTCAAATAGTATTAAATACTTTTCAAATGATAGGGCTCAGATAATTACAtatctgtttgtgtgtgcatatttTCCTCTCATGTGTATTTATCTCATAAGCCTTTCTGCTAGTAATCAACGTGTGCTGTGTTAGAGATAGTAAGATGGTAGTCGGTAGGCCTACCTAAGAGTGAAACATTGTCTACAGTTGAGCAGAGGAAAAACAAATGTGTACCAACCAGTATAAACCAGCATTTCTAAAGATGTCTCTATTTTTTTGGAGCCCAGTTATAGATTGGTTATGATTACCTCTGTTAAGTGCCAAATAATAAGTGCAAGCACAGTAGGTAATTTAATTAGTGCTTTCTTCATTTTTACCTCAGAGAGGATTCATTTAATTAATGTCAACAATTAACCCCCATGCAGCCAAGAATGATTCCTATTGCCATATCTTGTCATGGCTGTATGTCATAGACCTTCAACAGGCTGGTCTGCTTTGCAGTCTGCCAAATACTGTACCAAACCTCTATTTTAGGAGGCTCCGTGGAATCAATAAAACACACcgaatatgtgtgtatgtgtacccgTGTACAGAAAATATTATTAATATTTGTATCTATCCGTCCATCGTACAAATAAAATATAGATGCCTA

Function

NR:

description
uncharacterized protein LOC110494369

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569359.2 True 2566 mRNA 0.47 2 64063770 64066586
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493238 NA coding upstream 5125 64056997 ~ 64058645 (+)
LOC110494368 LOC106565646 coding upstream 7378 64053228 ~ 64056392 (+)
LOC110494367 LOC106565647 coding upstream 10984 64043155 ~ 64052786 (+)
LOC110494366 LOC106565648 coding upstream 144214 63909040 ~ 63919556 (+)
nbl1 nbl1 coding upstream 159895 63892998 ~ 63903875 (+)
ssu72 ssu72l coding downstream 185 64066771 ~ 64071414 (+)
LOC110494371 LOC106565644 coding downstream 8331 64074917 ~ 64079438 (+)
sdhb sdhb coding downstream 53935 64120521 ~ 64128339 (+)
mfap2 mfap2 coding downstream 62366 64128952 ~ 64133653 (+)
ap5b1 ap5b1 coding downstream 111081 64177667 ~ 64198472 (+)
G1475012 NA non-coding upstream 82916 63980619 ~ 63980854 (+)
G1475008 NA non-coding upstream 85850 63977668 ~ 63977920 (+)
G1475005 NA non-coding upstream 88224 63975346 ~ 63975546 (+)
G1474995 NA non-coding upstream 97197 63966360 ~ 63966573 (+)
G1474977 NA non-coding upstream 112685 63944119 ~ 63951085 (+)
G1475066 atad3 non-coding downstream 23171 64089757 ~ 64091921 (+)
G1475072 NA non-coding downstream 29119 64095705 ~ 64096426 (+)
G1475078 NA non-coding downstream 40646 64107232 ~ 64107471 (+)
G1475111 NA non-coding downstream 112670 64179256 ~ 64180301 (+)
G1475223 NA non-coding downstream 306959 64373545 ~ 64379198 (+)
tmcc2 LOC106565656 other upstream 375680 63684043 ~ 63691033 (+)
srsf3b LOC106565658 other upstream 400516 63658373 ~ 63663255 (+)
G1474159 NA other upstream 846176 63216948 ~ 63217594 (+)
G1473177 NA other upstream 1352634 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 1364955 62698503 ~ 62698815 (+)
G1475820 NA other downstream 496788 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 541668 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 688735 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1236831 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1259291 65325877 ~ 65327163 (+)

Expression

fndc10(LOC106565645) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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fndc10(LOC106565645) Expression in each Bioproject

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fndc10(LOC106565645) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network