ssu72 (ssu72l)


Basic Information

Item Value
gene id ssu72
gene name ssu72l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64066771 ~ 64071414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569360.2
CCTTGTGGATAAAACTCCCCGTCGCCATTTTAACAGGCTCACAGAAAGAAGGTTATCCGATTGCTTTGACTCATTTATATATACCCTGTTGTATTTGGTTGGTTAGTTAAAACGAAGGTCTTCCCTACAGTCTTTTTGTGATAGCTACATTTGTACCACGTTTAAACTAGTTGTGTGTAGTACTTTCTTAACATTCGATTGCTAGTTCTTTCAGAAAAATAGCATTCGCAATGCCGAGCCACCCGCTGCGCGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGCAGCATGGAAGCGCACAACATCCTCAGCAAACGTGGCTTTGACGTGCGCTCTTTTGGGACAGGGTCCCATGTGAAGCTACCTGGTCCAGCACCGGACAAGCCCAATGTGTATGACTTCAAAACGACTTATGAACAGATGTACAACGACCTGGTCCGCAAGGACAAGGAGCTATACACGCAGAACGGAATCCTGCACATGTTGGACCGCAACAAGCGGATTAAGTCCCGACCCGAACGCTTCCAGAGCTGTAAGGACCAGTTTGACCTGGTCATCACCTGTGAGGAGAGGGTCTACGACCAAGTGCTGGAGGACCTGAGCTCTCGGGAGCAGGAGACCTTCACGCCGGTTCACGTCATCAACGTGGACATCCAGGACAACCACGAGGAGGCAACACTGGGGGCTTTCCTCATCTGTGagctgtgtcagtgtATCCAGCACACCGATGACATGGAAAACGAGATGGACGAGCTGCTGCAAGAGTTTGAGGACAAGAGCAACAGGCCTTTCCTCCACACAGTCTGCTTCTACTGATGCGCCTGCTACCAAATCTGCAATATCATACGCCCCCTGACCAAACATGCACGTTTATACACAGACTCATGTACACTTCCGTATGAACTTACTGATTACTTTTCACACAGACCTACACAATGCTCAATCTCTGCTGTTGGTCAGGGCCGAGGGTGAAGGGATGGTTGCTTTCTCTATTAAGTGGACAGGCTCATCCCTCTTGCTCTGCCTTTCCTCCTTGGGGCCAAGGTGGGTCCAAAGTCCTCCCCCTATTCTATAGTGAAACCACTGACCTGCCTCCCCACAGAGAAATGCCTCTTTTGTCAAACATCCTCTACCTCCAaaggaggattttttttttttgttcaagtGTTGCACAGTGATGTGGATTGCAAAGCAACATTGATTTAAGTTCCTTTTAAAGAaagaatatattttttattttaagtaTACTTTGTCACATTTACTCTTGATTGTGGAGAGTAGTAGTGTTTACGGGATAGAGTGGAGACGGTTTAGGTATgaatgtgtttcagtgtgtgacTGTATCTGAGTGTGTACCAGTAGTTAATTAGGAATTAATCTAAATAGGGGGCTATATAATGAACAACCAAATAGAGACTTCAAGGTTCTCATTTTGCCCTCTTAATTTACGTTATGTATGATTCATATTTAAAAACCAGATTTGCTACCTTTTTCAGGGAGGAATATTTTTTTCTTTTGTAAATTGAAAAGAATGAAAACATTAATTATTTGCAAGCTGAGGACTCAGTCCATAGTGCCTGAATATTTCTGTATGTACATATGAATCCAATGAATGAATAAACATGTCTAGAAAAACA

Function

NR:

description
Ssu72 RNA polymerase II CTD phosphatase-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569360.2 True 1636 mRNA 0.44 5 64066771 64071414

Neighbor

gene id symbol gene type direction distance location
fndc10 LOC106565645 coding upstream 185 64063770 ~ 64066586 (+)
LOC110493238 NA coding upstream 8126 64056997 ~ 64058645 (+)
LOC110494368 LOC106565646 coding upstream 10379 64053228 ~ 64056392 (+)
LOC110494367 LOC106565647 coding upstream 13985 64043155 ~ 64052786 (+)
LOC110494366 LOC106565648 coding upstream 147215 63909040 ~ 63919556 (+)
LOC110494371 LOC106565644 coding downstream 3503 64074917 ~ 64079438 (+)
sdhb sdhb coding downstream 49107 64120521 ~ 64128339 (+)
mfap2 mfap2 coding downstream 57538 64128952 ~ 64133653 (+)
ap5b1 ap5b1 coding downstream 106253 64177667 ~ 64198472 (+)
p3h1 p3h1 coding downstream 138827 64210241 ~ 64218677 (+)
G1475012 NA non-coding upstream 85917 63980619 ~ 63980854 (+)
G1475008 NA non-coding upstream 88851 63977668 ~ 63977920 (+)
G1475005 NA non-coding upstream 91225 63975346 ~ 63975546 (+)
G1474995 NA non-coding upstream 100198 63966360 ~ 63966573 (+)
G1474977 NA non-coding upstream 115686 63944119 ~ 63951085 (+)
G1475066 atad3 non-coding downstream 18343 64089757 ~ 64091921 (+)
G1475072 NA non-coding downstream 24291 64095705 ~ 64096426 (+)
G1475078 NA non-coding downstream 35818 64107232 ~ 64107471 (+)
G1475111 NA non-coding downstream 107842 64179256 ~ 64180301 (+)
G1475223 NA non-coding downstream 302131 64373545 ~ 64379198 (+)
tmcc2 LOC106565656 other upstream 378681 63684043 ~ 63691033 (+)
srsf3b LOC106565658 other upstream 403517 63658373 ~ 63663255 (+)
G1474159 NA other upstream 849177 63216948 ~ 63217594 (+)
G1473177 NA other upstream 1355635 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 1367956 62698503 ~ 62698815 (+)
G1475820 NA other downstream 491960 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 536840 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 683907 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1232003 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1254463 65325877 ~ 65327163 (+)

Expression


Co-expression Network