LOC110494371 (LOC106565644)


Basic Information

Item Value
gene id LOC110494371
gene name LOC106565644
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64074917 ~ 64079438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569361.2
CTTCCAACAGAGTGTTGTTTTTTGGACCAGGTACCACTGGATAGTtctggtgagagagaaagaaactgcTGTTAAGAAGTTTGGATGCAAATGGCCACAACCACCATGATCTTTATGATTTTGGGGGCTTCACTTGTGATGGCAGTAGCGTGTCTAACGGACATGAACGCTCTACTAGACCGCTTTCACAACTACATCTTACCACATTTACGAGGGGAGGACCGCGTCTGCCATTGCAACTGTGGAAGGCACCATGTCCACTATGTGATCCCGTACGATGGGGACCAGTCTCTGGTAGACTCGGCAGAGAACTACTTTGTGAGTGATAGCGTGACCAAGCAGGAGCTGGACCTGATGCTGGGGCTGCTGCTGGGCTTCCTCCTCAGCTGGTTACTGCTGTGGCTGGACGGGGCGCTGCACGCTGCCCTCAGGGCCTGGAGGGCCAAACAGCACCATGATGTGTTCTCCTGGTCATGGGTTCCCCGCTTCTGTAACCTGAGAGACCTGGGGAGACGGGTGCACCTGAGGAAGCTGGAGGACTCCAGTGGGAACATGGTGCACATTAAGCAGAAGCTGTACCACAATGGACACCCCAGCCCTCGTAACCTCTGAGAGCCATTGCACATTGGACAGCCCAGCCCACGCCACCTCTGCGAGCCATGGCACAACGGCCACCCCATTCCACATCACCTCTGAGAGCAATGAGCTGGCTGAGACAGGCTGAGACCTGCTGTCAACTGACCAACCAGACTTCAGCCGCATGGGCAACTAAACAATGACTATTCAAGATATACCCTTCAAACCATACTGTTTCTTATGGACACTGGATAGAGCACTTTCTCAAGTGACCCCATGGTCTTTACCCACAGTGCACTCCTCACCCTCCATATTTTATGTAAAAAGATTGTAGTTAATGAGAATCCATTTAGGAGGGCGTAAGCAATTTTCCAGAGTGTGTTTGTTTTTCAAAatagttatatatattatatatttagttTTAGAATGTCAATTTTGCTAGAAGTGGGGATAGGGTGTATTCATTATTTTGCTTTTGTTTTGTCAGTTTGTagaaaaatgtgtttattttgccTGAAGATGTCAGTTTTGAAGTTAGAATATTTATTTTGCTCGAGGTTGTTTATTATTGACAGGGGTTTGTGTATTGGAAGAGgtacactatatatgcaaaagtatgtggacaccacttaaaattagtggattcggctatttcagccacacccattgctgataggtgtataaaatcgaacacacaatcaccatagacaaatattggcagt

Function

NR:

description
PREDICTED: transmembrane protein 240-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569361.2 True 1298 mRNA 0.47 4 64074917 64079438

Neighbor

gene id symbol gene type direction distance location
ssu72 ssu72l coding upstream 3503 64066771 ~ 64071414 (+)
fndc10 LOC106565645 coding upstream 8331 64063770 ~ 64066586 (+)
LOC110493238 NA coding upstream 16272 64056997 ~ 64058645 (+)
LOC110494368 LOC106565646 coding upstream 18525 64053228 ~ 64056392 (+)
LOC110494367 LOC106565647 coding upstream 22131 64043155 ~ 64052786 (+)
sdhb sdhb coding downstream 41083 64120521 ~ 64128339 (+)
mfap2 mfap2 coding downstream 49514 64128952 ~ 64133653 (+)
ap5b1 ap5b1 coding downstream 98229 64177667 ~ 64198472 (+)
p3h1 p3h1 coding downstream 130803 64210241 ~ 64218677 (+)
cldn19 cldn19 coding downstream 177466 64256904 ~ 64280613 (+)
G1475012 NA non-coding upstream 94063 63980619 ~ 63980854 (+)
G1475008 NA non-coding upstream 96997 63977668 ~ 63977920 (+)
G1475005 NA non-coding upstream 99371 63975346 ~ 63975546 (+)
G1474995 NA non-coding upstream 108344 63966360 ~ 63966573 (+)
G1474977 NA non-coding upstream 123832 63944119 ~ 63951085 (+)
G1475066 atad3 non-coding downstream 10319 64089757 ~ 64091921 (+)
G1475072 NA non-coding downstream 16267 64095705 ~ 64096426 (+)
G1475078 NA non-coding downstream 27794 64107232 ~ 64107471 (+)
G1475111 NA non-coding downstream 99818 64179256 ~ 64180301 (+)
G1475223 NA non-coding downstream 294107 64373545 ~ 64379198 (+)
tmcc2 LOC106565656 other upstream 386827 63684043 ~ 63691033 (+)
srsf3b LOC106565658 other upstream 411663 63658373 ~ 63663255 (+)
G1474159 NA other upstream 857323 63216948 ~ 63217594 (+)
G1473177 NA other upstream 1363781 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 1376102 62698503 ~ 62698815 (+)
G1475820 NA other downstream 483936 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 528816 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 675883 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1223979 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1246439 65325877 ~ 65327163 (+)

Expression


Co-expression Network