sdhb (sdhb)


Basic Information

Item Value
gene id sdhb
gene name sdhb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64120521 ~ 64128339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569365.2
CCAGTGTGATCTAGGCGTAAAGGAAATACCGCAGTGCATTCTGGTATAGCATATACAGCGAGAGGTCAGAGGAACGTTGTTCAAGATGTCGGTCGTTTGTCTCTCGTCCTTGGGTCGCTGTAGCGCCGTGGCATTCCGATCTTCCGCCGGAATGGTGGCGGTTCGGTATGCCCAGACAGCAGCGGCCACAGCCCCACAGCCTAGAATCAAGAAGTTCCAGGTGTACCGCTGGGACCCAGACACAGTTGGGGACAAGCCCCGCATGCAGACCTTCGACATTGACCTCAACACCTGTGGCCCCATGGTATTAGATGCCCTCATCAAGATCAAGAACGAGATGGACGGCACTCTGACTTTCCGTCGCTCCTGCAGAGAGGGTATCTGTGGATCCTGTGCAATGAACATCAATGGAGGCAACACACTGGCCTGCCTCAACAAGATTGACACCAACACCAGCAAGGCTACCAAGATCTACCCTCTGCCACACATGTACGTGGTCAAGGACCTGGTGCCTGATATGAGTAATTTCTATGCTCAGTACAAGTCAATCGAGCCCTACCTGAAGAAGAAAGATGAGACAAATGAGGGAAAGGAACAATACCATCAGACTGTGGAGGACAGACAAAAACTGGACGGGCTGTATGAATGTATCCTGTGTGCGTGCTGCAGCACCAGCTGTCCCAGCTACTGGTGGAATGGAGACAAGTACTTGGGACCTGCTGTCCTCATGCAGGCCTATCGTTGGATGATCGACTCGCGAGACGAGTTCACAGAGGAGCGTCTTTCCAAACTGCAggatcctttctctctctaccgctgTCACACCATCATGAACTGCACTAAGACCTGCCCCAAGGGCCTTAACCCAGGGAAGGCGATTGCAGAAATTAAGAAGATGATGGCCACTTACAAGGAGAAGAAATCAGCTTCTgcttgaacccccccccccccataaattaTACTATAATTAAGATTCCCTACCAGTAGGTTCTGCTGGGCCTACACACCTGTTCAACACCTCCACACTCTAGCACTACTGACTGACACTGGACTCCAAGGGCAATGGGTGCATGGTCCACGCCggattggtgtgtgtgtactgtagcgcgagagcgtgtgtttgtgtgtaagagaATGCATGGGTGCATACTGTATGTGAGACTTGACCCACTGACTTAAATTGTGCATTCCTTAGTTCATATACCCATTGTTTGGTCTCgtaggtgtgtgtgggggtgggtttGAGTTCAGAGTGTGATGTATTCACAGATATTAAATATGTATATGATCTGCAGCTCTTCCGTCATACCTATATCTATCAGGAGTCTGCTTGTAATAAATCCAATGCTTTAATGCC

Function

symbol description
sdhb Predicted to enable iron-sulfur cluster binding activity and ubiquinone binding activity. Predicted to be involved in aerobic respiration and respiratory electron transport chain. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Predicted to be active in mitochondrial membrane. Is expressed in several structures, including alar plate midbrain region; immature eye; optic tectum; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma. Orthologous to human SDHB (succinate dehydrogenase complex iron sulfur subunit B).

NR:

description
succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569365.2 True 1357 mRNA 0.50 8 64120521 64128339
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Neighbor

gene id symbol gene type direction distance location
LOC110494371 LOC106565644 coding upstream 41083 64074917 ~ 64079438 (+)
ssu72 ssu72l coding upstream 49107 64066771 ~ 64071414 (+)
fndc10 LOC106565645 coding upstream 53935 64063770 ~ 64066586 (+)
LOC110493238 NA coding upstream 61876 64056997 ~ 64058645 (+)
LOC110494368 LOC106565646 coding upstream 64129 64053228 ~ 64056392 (+)
mfap2 mfap2 coding downstream 613 64128952 ~ 64133653 (+)
ap5b1 ap5b1 coding downstream 49328 64177667 ~ 64198472 (+)
p3h1 p3h1 coding downstream 81902 64210241 ~ 64218677 (+)
cldn19 cldn19 coding downstream 128565 64256904 ~ 64280613 (+)
nucks1a LOC106565634 coding downstream 398734 64527073 ~ 64553355 (+)
G1475078 NA non-coding upstream 13050 64107232 ~ 64107471 (+)
G1475072 NA non-coding upstream 24095 64095705 ~ 64096426 (+)
G1475066 atad3 non-coding upstream 28600 64089757 ~ 64091921 (+)
G1475012 NA non-coding upstream 139667 63980619 ~ 63980854 (+)
G1475008 NA non-coding upstream 142601 63977668 ~ 63977920 (+)
G1475111 NA non-coding downstream 50917 64179256 ~ 64180301 (+)
G1475223 NA non-coding downstream 245206 64373545 ~ 64379198 (+)
G1475261 LOC100194703 non-coding downstream 313882 64442221 ~ 64442495 (+)
G1475265 NA non-coding downstream 321692 64450031 ~ 64450493 (+)
G1475268 NA non-coding downstream 329452 64457791 ~ 64458036 (+)
tmcc2 LOC106565656 other upstream 432431 63684043 ~ 63691033 (+)
srsf3b LOC106565658 other upstream 457267 63658373 ~ 63663255 (+)
G1474159 NA other upstream 902927 63216948 ~ 63217594 (+)
G1473177 NA other upstream 1409385 62710339 ~ 62711136 (+)
G1473171 LOC106581772 other upstream 1421706 62698503 ~ 62698815 (+)
G1475820 NA other downstream 435035 64563374 ~ 64565146 (+)
LOC110494386 LOC106565630 other downstream 479915 64608194 ~ 64625111 (+)
LOC110494389 NA other downstream 626982 64755321 ~ 64780475 (+)
G1476510 NA other downstream 1175078 65303417 ~ 65304128 (+)
G1476520 NA other downstream 1197538 65325877 ~ 65327163 (+)

Expression

sdhb(sdhb) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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sdhb(sdhb) Expression in each Bioproject

Bar chart with 21 bars.
sdhb(sdhb) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network