LOC110494388 (LOC106565628)


Basic Information

Item Value
gene id LOC110494388
gene name LOC106565628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64626029 ~ 64637743 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569396.2
CATGAGGACCGACAGGTGGCGCTAGCTCCACAACAGAGGCCAAATAGACAGGTCTACAGATATATTTCATAAACAGATCCAGAAAATGTAGTCATCCATACAAATGCATTACACGGAAAATAACGCGTAATCATGACACTTCACATCGCCGTGGAAGATGCCCTAGTCTCCTACACTGCGGCACAGTTAACTGATGGACATCGGTTTCCAGGGGAGGGCACTGCTAGTTCGACAGGTTTATCAGCGTGACGTGACTGGAAGGCAAATAAAAGTTTATCAACTCTCCGTAACAACCATATATGCTAGCCATATGCAGGCATCCCAACTTTGCCAGTCCACTTAAACAAACGTCAAGGGTTGTGTTGTCGGCGCGCTTAAAGATTCCTTAAAACCTTCCTCCCAATGAAACCATAACCTGCTCCAGCGTTCATCACGCAACCCACAAGCAACAACGAGATGATGTTAGTAGATGATCGTGTCTGGGCTCTGTTCAAGGGACACTGGCAGCACACACTGACTTACTGGAGCGTGTTCTTCAGTTTCGGGCTGTGTATCGCGTTCCTGGGGCCGACCATCCTGGACCTGAGGTGTCAGACTCAGTCCACTCTGCAGGAGATCACTTGGGTCTTCTTCGCCCAACAGCTCTTCCTCATGCTGGGGAGCGCCCTGGGAGGACTCTTCAAGAAGACGCTCCGCTGCTCCCTCTCAGCTCTCTTCGTCTCCAGTCTTGTCATCTCCGTGGTGTTTGCCATCATCCCACTTTGCCACCATGTGCTGATGCTGGCTGTTGCCATGGCGATATCTGGCACGGCAATGGGGGTGATTGACACCATCGCCAACCTGCAGCTGGTGAAGCTCTACCAGAAAGACTCAGCCATTTTCCTACAGGTCCTGCATTTCTTCATAGGGCTGGGAGCGTTGGTCAGTCCCCTGGTAGCAGACCCATTCCTGTCGGAGGGGAGTTGTGTTCTGGGGGGGAACATGACAGCCAACTCCTCCACTGACCTCCATCACCTCCGCAGCTACCTGGCAGGTAAGGGGACAACCCCTCTGCACAACGTAtcccaccactaccacctccacacAGAGGGCATCATCACCACCAATGTGTCCTACGCATTCTGGATCATGGCTCTTATCAATCTGCCTGTACCAGTAGCAGTGTATGTCTTGATGTATCGTGAGAGGCTGTTCCCCTGCTCGAACCACAGCCCACGTCTACTGGACAAGGAGAAAAACTCACAGAAGAACCAACAGGACCACAATATCCAGGGTCACGGGGGTTTGTTTGGCTGCTGTAACTATGCTGATGTGAAGGATCGCCCTGCCTCCTATTTCCTCCTCTACATTCTGGGTGGAGCCGTGCTCTTCATCACTGACGGCATAATAATTTGTTCTCTTACACAGGGTTCTTACACAGGATTCATTTACACCTACGCagtgtctcctcccctctctctgcctcacaaGACGGCAGGCTGTCTGACCAGTGTGTTCTGGGCATCCGTCACCGCGGGCAGACTGGCGTCTATATATCTGTCATACAGATACACACAACAACGACTCATCTCGGTCAGCCTGgcaGGGATGATGGCGGTGCAGTGTCTGCTGTTGATCCTGTACTCCAGCCCTGTGTTCCTCTTCATGGGGACGTGTGTGTTAGGCCTCTTCATCAGCAGTGTGTTCCCCTGCATGGTGGCCCTCACAGAAGACATGGTCAACTATAAAGGGTGTGCCACTACTGTCCTGGTGACCAGTGCTGGTACAGGAGAGATGGTGCTGCAGCTTCTCACAGGACAGTTGATCCACAGTAAAGGCAGTTATAGTTTCATGTTGGTTGGTATGATATCATCCTGCATCGGATTCACAGTATTCCTGGGCCTAATCTACATCCAGCATCTACACAAGAGCTCCCAAgcagCCACTAGTAAGGAAATGGCCATGACAGAGAAGCCTTCAATGTAAAGCCATGAACAGGTGGAGACCAAAGCTTCCTCCATTGGCATGCTGTTTATTCAAACTCAACGGCAGCTGGTGTCCTGCTGGATCCTTACTGCTCCATGTCTTATAGAGCGTTCATGTAGACAGTGACCCGTGTGACTCCAGTGGAGTGGTCACATGAGGACAGATGGTGTTGCTATGTGAGCAAGGTGTGGTGGTTAGTTACCTCGTAAAACTCACTGGATTAGGAAAACATACTTCCAAATCTAGTCTTCAGAGGCTAAGGAACAGACAAACAGGGTGACTAGAGCAAGGTTTTTTTAATAGTCTTCTGTTAAACGTTTCCTATTTCACCTCAAACACAAACAGCTTGTAAACATTTGAAAAGCATTGAACAAATAATTTACAGAAGTGAACAAAACAAGAACGATAGAAGCAAATGTACTGGTTTCATAATTGAATTGTGATTCAAATAAAAACAattgttaaaatgtattttttttttacagaaatatcCACTAGGTGTAATGCTGGGTTGAATAGGGTCGAATGAATGAAACCTGAATCAGAATGATCACACCTACAATATGGCTGCCTATTCAGAGGTTGTCTTTATCAAAACTGGTCATATTATAGAACTCTGACTACTGTATCAAGTTAACAAATCTAACTCTTTAGAAAATACACATTTGTAATAGGGCTTAACTAAAGGGACTCTGCCACTTTAAGAGGCATTAGGATTTTAAATGaagcaatcagcagttgaaatgATAAAGCGGTGACTCACCCttgtttcggtaaaaagctgaggatggggctggagaaatgtaagcaCTCAAATTCAGATGGATGCGAGGACTAtatcaaaactatagttttaaacatgttttgaggctatatagtgtttgtttacgttTACTTTTTTTTCAAACacgagtaaaacaagcttattcTGGGTTCTGTTGGCCAGGAGATTTGAACTAAGCTCAATAGGTACATATTCATAAGtcaaatggatgtagcaactgctgattgcccctttaaagacGCACTTCCttagaataaacattttaaatgtaatctTTAGATTTGCAATATTAAAGTATTTTGTGCATAGTTTTACTGTTGATTTGGGAAAATAAATGTACAGAATTCGTTTACAACTATAATTAGGGTTAATATAGATTTTTCAAACACaggaaaaaaagttatttaaaacaaaggacaaaTCCAATACGACAGGTACCCTATTGTTCTAAGTGCCaatgttgacacacacacacacacaatattaaaGTCCAATGCATCAGTTTTTCAACATCAAATATTTTATGGGCAACGATTACCTTACTGATTGTTTAATAAAATTTGTCAAAAAGCAACAAAAATAGCAATATctcaatcaataattttgctaggactgtcagggagtggtctgagtggggagggggaaaccGAAAAGGAGTTAGGTTTGGAAttgtttcttattggtctattaactaatttaccgcatggTGTCGCCAtagaaggccaaaactccatcccaccaaaacgggcttaaatttcaggcagtcttttcaaacagctcttaaacagaaagggcattatcattttcacaatatcattttcacaatttcattaTTCTTCCAACCTCTGGATGGATGGATAAAAACACATGAAATCAAgtctgactgcactgggcctttaacaatATCAAAATACTTAACAaagacggatttaagtttccctctGTAAGGCTTTGATTTGCAAATAGTCAAATGTCATCATCACTTCCCAACACTGAGTAAAGAAAACCCACGGAAAAAACAAAATCAAATAAGACATCAGCGTTAAAAACAGACTGCAGAACAGCATTGAGCCTAGCATCTGGCCATGttacaaaaacacattacaaTTCAGTCGGGGGGGTAAATGGAATTCAGCTGAAGTAAATACACACTTGTGTTATTTGATTGTCTTATTTACttgtcagatacagagggaaagGGAGCTTTGATtgtgtatggaaaatgtcttAGTTGTGCAAAATCGAGCTTAGCAGAATCACTCTAAACAGGATTCTGGTACATTAAAACCTCATTCATTTTCCTGATTCACAGGACTTGCAAATGTGGGTGACGATATTCCATACTGCTGGAATCCTTAATTGTGAAACAGCCACGTCCGTTTGCGATATTAgaacaaagaagttactgcaaacagttttttcccccctcGGACATCATTGTACGCACGATAGAAGACCTATGTCCTGCATTTTTTTTCTCAGCTcggccagaataacaacaacaatggtGGTGTGGCCAGGGGCACAGATTCCATCTTTAAGGCAACTGTCATTAAAATCAAAATAACTATACAAACCTGTTCTAAAACATGAATCATACAAAGAAAATGTGTTAAGTCACAAACCATATTGCTTTGTGTCATACTTTGTGAACACCCTGTGTGGGTTTTCTCCcagtagcctgggtaccagactgGTTATGCCTTCAACCATGCCACATCAGTGCCCTTCCCAAAGTCTTGGCACGGTGACATGTTGGCAaagcagaaacagactgacacCAACCAGGCTATTCACTGGCCATGTCATGGGAATGGCTGTTTCACCCCCACCTGTTAGTTCAATGGGAGaggaaacatactgtacataggaGAGCAGACATTAGACAAGTAAAGGACTGGTAGAAATCTAGAATACTTACACTCTGTATTCTAGTACTTCACCAAATACTGTTGTAGTGCTCTGTTGAAGTTTGCGCCCAGGGAGACCAGGGCAGtggggaggagggtagagagtgGACAGGGGAGGGGATGGCTGTTCCCACACTCCTCAGGTTTGGCTTTAGAGGTTTAAGGCACCACGTTAACATGGCTGATTCTTATGGCGCAACCTTACAGGTTAGTGACAAACTCCTCTGCCATCCAACAATTCAATTCTATCAGAGTCCAGATGTGATTTCCCTTCACACATTTCATGTTTTCCTTATAGCTTCACAACAGAAATGCACAGccttagggttagtttatggcgAGGATCCTTATTTGCTCAATCTCCACAAGGTTAGTAGTTATTTGGCAAAGGAGGTGATATTAATCTGTCCAACTATCTGAGGCGGCAGGGTTGTTTATAAGTTAGGAATGTGGTTAAGGCTAGGTTTTAGGTTGGGGTTACAGTAAGGGTTATGGCTTCTCATAAACTGACCTATAGCCATAGGGCCTTTTTGCATACATAAATTCAATATCTTCCAAGCATCACACATGCATAAGTCCCATAAATATGCATGTTTTTCTCTGGTAGAGACTGAGGTGGTTTGGTTCTGTTCTGATTTGGCTGCCTGTATACTGGTCTAAGTGAGAGAATTACAGTAAGGACATTTTGTTATGGCAAAAGACCATTACACACCGCAGAGAGCAGAGTCACGACCTCACACTGCTTCACTTATAGTGGCAGGCCTCGCACTGCTTCATATATACTGGCAGGCCTCGCACTGCTTCATATATACTGGCAGGCCTCGCACTGCTTCATATATACTGGCAGGCCTCGCACTGCTTTATATATACTGGCAGGCCTCGCACTGCTTTATATATACTGGCAGGCCTCGCACTGCTTTATATATACTGGCAGGCCTCGCACTGCTTTATATATACTGGCAGGCCTCGCACTGCTTTATATATACAGGTAGGCCTCGCACTGCttcatgcagttgaagtcggaagtttacatacaggttggagtcattaactcgtttttcaacaaactatagttttg
>XM_021569397.2
GACCGACAGGTGGCGCTAGCTCCACAACAGAGGCCAAATAGACAGGTCTACAGATATATTTCATAAACAGATCCAGAAAATGTAGTCATCCATACAAATGCATTACACGGAAAATAACGCGTAATCATGACACTTCACATCGCCGTGGAAGATGCCCTAGTCTCCTACACTGCGGCACAGTTAACTGATGGACATCGGTTTCCAGGGGAGGGCACTGCTAGTTCGACAGGTTTATCAGCGTGACGTGACTGGAAGGCAAATAAAAGTTTATCAACTCTCCGTAACAACCATATATGCTAGCCATATGCAGGCATCCCAACTTTGCCAGTCCACTTAAACAAACGTCAAGGGTTGTGTTGTCGGCGCGCTTAAAGATTCCTTAAAACCTTCCTCCCAATGAAACCATAACCTGCTCCAGCGTTCATCACGCAACCCACAAGCAACAACGAGATGATGTTAGTAGATGATCGTGTCTGGGCTCTGTTCAAGGGACACTGGCAGCACACACTGACTTACTGGAGCGTGTTCTTCAGTTTCGGGCTGTGTATCGCGTTCCTGGGGCCGACCATCCTGGACCTGAGGTGTCAGACTCAGTCCACTCTGCAGGAGATCACTTGGGTCTTCTTCGCCCAACAGCTCTTCCTCATGCTGGGGAGCGCCCTGGGAGGACTCTTCAAGAAGACGCTCCGCTGCTCCCTCTCAGCTCTCTTCGTCTCCAGTCTTGTCATCTCCGTGGTGTTTGCCATCATCCCACTTTGCCACCATGTGCTGATGCTGGCTGTTGCCATGGCGATATCTGGCACGGCAATGGGGGTGATTGACACCATCGCCAACCTGCAGCTGGTGAAGCTCTACCAGAAAGACTCAGCCATTTTCCTACAGGTCCTGCATTTCTTCATAGGGCTGGGAGCGTTGGTCAGTCCCCTGGTAGCAGACCCATTCCTGTCGGAGGGGAGTTGTGTTCTGGGGGGGAACATGACAGCCAACTCCTCCACTGACCTCCATCACCTCCGCAGCTACCTGGCAGGTAAGGGGACAACCCCTCTGCACAACGTAtcccaccactaccacctccacacAGAGGGCATCATCACCACCAATGTGTCCTACGCATTCTGGATCATGGCTCTTATCAATCTGCCTGTACCAGTAGCAGTGTATGTCTTGATGTATCGTGAGAGGCTGTTCCCCTGCTCGAACCACAGCCCACGTCTACTGGACAAGGAGAAAAACTCACAGAAGAACCAACAGGACCACAATATCCAGGGTCACGGGGGTTTGTTTGGCTGCTGTAACTATGCTGATGTGAAGGATCGCCCTGCCTCCTATTTCCTCCTCTACATTCTGGGTGGAGCCGTGCTCTTCATCACTGACGGCATAATAGGTTCTTACACAGGATTCATTTACACCTACGCagtgtctcctcccctctctctgcctcacaaGACGGCAGGCTGTCTGACCAGTGTGTTCTGGGCATCCGTCACCGCGGGCAGACTGGCGTCTATATATCTGTCATACAGATACACACAACAACGACTCATCTCGGTCAGCCTGgcaGGGATGATGGCGGTGCAGTGTCTGCTGTTGATCCTGTACTCCAGCCCTGTGTTCCTCTTCATGGGGACGTGTGTGTTAGGCCTCTTCATCAGCAGTGTGTTCCCCTGCATGGTGGCCCTCACAGAAGACATGGTCAACTATAAAGGGTGTGCCACTACTGTCCTGGTGACCAGTGCTGGTACAGGAGAGATGGTGCTGCAGCTTCTCACAGGACAGTTGATCCACAGTAAAGGCAGTTATAGTTTCATGTTGGTTGGTATGATATCATCCTGCATCGGATTCACAGTATTCCTGGGCCTAATCTACATCCAGCATCTACACAAGAGCTCCCAAgcagCCACTAGTAAGGAAATGGCCATGACAGAGAAGCCTTCAAGTGAGTAAGAGAGGCCGTGAGGATGAATCAATGGAAAGAGAGGACTGTTTAAACAAATGGTGGA
>XM_021569395.2
TGAGGACCGACAGGTGGCGCTAGCTCCACAACAGAGGCCAAATAGACAGGTCTACAGATATATTTCATAAACAGATCCAGAAAATGTAGTCATCCATACAAATGCATTACACGGAAAATAACGCGTAATCATGACACTTCACATCGCCGTGGAAGATGCCCTAGTCTCCTACACTGCGGCACAGTTAACTGATGGACATCGGTTTCCAGGGGAGGGCACTGCTAGTTCGACAGGTTTATCAGCGTGACGTGACTGGAAGGCAAATAAAAGTTTATCAACTCTCCGTAACAACCATATATGCTAGCCATATGCAGGCATCCCAACTTTGCCAGTCCACTTAAACAAACGTCAAGGGTTGTGTTGTCGGCGCGCTTAAAGATTCCTTAAAACCTTCCTCCCAATGAAACCATAACCTGCTCCAGCGTTCATCACGCAACCCACAAGCAACAACGAGATGATGTTAGTAGATGATCGTGTCTGGGCTCTGTTCAAGGGACACTGGCAGCACACACTGACTTACTGGAGCGTGTTCTTCAGTTTCGGGCTGTGTATCGCGTTCCTGGGGCCGACCATCCTGGACCTGAGGTGTCAGACTCAGTCCACTCTGCAGGAGATCACTTGGGTCTTCTTCGCCCAACAGCTCTTCCTCATGCTGGGGAGCGCCCTGGGAGGACTCTTCAAGAAGACGCTCCGCTGCTCCCTCTCAGCTCTCTTCGTCTCCAGTCTTGTCATCTCCGTGGTGTTTGCCATCATCCCACTTTGCCACCATGTGCTGATGCTGGCTGTTGCCATGGCGATATCTGGCACGGCAATGGGGGTGATTGACACCATCGCCAACCTGCAGCTGGTGAAGCTCTACCAGAAAGACTCAGCCATTTTCCTACAGGTCCTGCATTTCTTCATAGGGCTGGGAGCGTTGGTCAGTCCCCTGGTAGCAGACCCATTCCTGTCGGAGGGGAGTTGTGTTCTGGGGGGGAACATGACAGCCAACTCCTCCACTGACCTCCATCACCTCCGCAGCTACCTGGCAGGTAAGGGGACAACCCCTCTGCACAACGTAtcccaccactaccacctccacacAGAGGGCATCATCACCACCAATGTGTCCTACGCATTCTGGATCATGGCTCTTATCAATCTGCCTGTACCAGTAGCAGTGTATGTCTTGATGTATCGTGAGAGGCTGTTCCCCTGCTCGAACCACAGCCCACGTCTACTGGACAAGGAGAAAAACTCACAGAAGAACCAACAGGACCACAATATCCAGGGTCACGGGGGTTTGTTTGGCTGCTGTAACTATGCTGATGTGAAGGATCGCCCTGCCTCCTATTTCCTCCTCTACATTCTGGGTGGAGCCGTGCTCTTCATCACTGACGGCATAATAATTTGTTCTCTTACACAGGGTTCTTACACAGGATTCATTTACACCTACGCagtgtctcctcccctctctctgcctcacaaGACGGCAGGCTGTCTGACCAGTGTGTTCTGGGCATCCGTCACCGCGGGCAGACTGGCGTCTATATATCTGTCATACAGATACACACAACAACGACTCATCTCGGTCAGCCTGgcaGGGATGATGGCGGTGCAGTGTCTGCTGTTGATCCTGTACTCCAGCCCTGTGTTCCTCTTCATGGGGACGTGTGTGTTAGGCCTCTTCATCAGCAGTGTGTTCCCCTGCATGGTGGCCCTCACAGAAGACATGGTCAACTATAAAGGGTGTGCCACTACTGTCCTGGTGACCAGTGCTGGTACAGGAGAGATGGTGCTGCAGCTTCTCACAGGACAGTTGATCCACAGTAAAGGCAGTTATAGTTTCATGTTGGTTGGTATGATATCATCCTGCATCGGATTCACAGTATTCCTGGGCCTAATCTACATCCAGCATCTACACAAGAGCTCCCAAgcagCCACTAGTAAGGAAATGGCCATGACAGAGAAGCCTTCAAGTGAGTAAGAGAGGCCGTGAGGATGAATCAATGGAAAGAGAGGACTGTTTAAACAAATGGTGGA

Function

NR:

description
major facilitator superfamily domain-containing protein 4A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569396.2 False 5737 mRNA 0.44 11 64626029 64637743
XM_021569397.2 False 2000 mRNA 0.52 10 64630159 64637737
XM_021569395.2 True 2022 mRNA 0.51 10 64630159 64637741

Neighbor

gene id symbol gene type direction distance location
LOC118940104 NA coding downstream 163428 64451248 ~ 64462601 (-)
epha8 LOC106565635 coding downstream 187918 64333910 ~ 64438111 (-)
c17h1orf50 cssa12h1orf50 coding downstream 423081 64198426 ~ 64202948 (-)
necap2 LOC106583104 coding downstream 436513 64179239 ~ 64189516 (-)
LOC110494376 LOC106565640 coding downstream 447356 64135614 ~ 64178673 (-)
LOC110494387 LOC106565629 coding upstream 211 64637954 ~ 64698061 (-)
LOC110494392 LOC106565622 coding upstream 276863 64914606 ~ 64959680 (-)
LOC110494395 ruxe coding upstream 331285 64969028 ~ 64971368 (-)
wnt4a2 wnt4a2 coding upstream 431744 65069487 ~ 65102532 (-)
LOC118940154 NA coding upstream 592906 65230649 ~ 65235780 (-)
G1475942 NA non-coding downstream 24868 64600849 ~ 64601161 (-)
G1475935 NA non-coding downstream 32271 64593524 ~ 64593758 (-)
G1475933 LOC106565633 non-coding downstream 39933 64585287 ~ 64586096 (-)
G1475931 NA non-coding downstream 45033 64579696 ~ 64580996 (-)
G1475895 NA non-coding downstream 68082 64552808 ~ 64557947 (-)
G1476009 NA non-coding upstream 83485 64721228 ~ 64721446 (-)
G1476010 NA non-coding upstream 83981 64721724 ~ 64721942 (-)
G1476017 NA non-coding upstream 90513 64728256 ~ 64728487 (-)
G1476021 NA non-coding upstream 92151 64729894 ~ 64730139 (-)
G1476030 NA non-coding upstream 98211 64735954 ~ 64736229 (-)
G1475940 NA other downstream 26815 64598894 ~ 64599214 (-)
G1475896 LOC106565632 other downstream 46776 64578328 ~ 64579253 (-)
G1475493 NA other downstream 490688 64134179 ~ 64135341 (-)
mrpl20 mrpl20 other downstream 528858 64094912 ~ 64097564 (-)
G1474741 LOC100136012 other downstream 1115486 63510116 ~ 63510543 (-)
G1476697 NA other upstream 693805 65331548 ~ 65335853 (-)
G1476703 NA other upstream 799762 65421041 ~ 65484829 (-)
LOC110494416 LOC106565959 other upstream 1694431 66330724 ~ 66343028 (-)

Expression


Co-expression Network