Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110494389 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 64755321 ~ 64780475 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: probable serine/threonine-protein kinase clkA, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002469269.2 | False | 1703 | mRNA | 0.51 | 3 | 64755394 | 64774729 |
| TU1688055 | False | 1671 | TUCP | 0.51 | 2 | 64755321 | 64774706 |
| TU1688070 | False | 7440 | TUCP | 0.48 | 5 | 64755321 | 64780475 |
| TU1688056 | False | 5545 | lncRNA | 0.47 | 2 | 64774819 | 64780475 |
| TU1688060 | False | 5545 | lncRNA | 0.47 | 2 | 64774819 | 64780475 |
| TU1688067 | False | 5223 | lncRNA | 0.46 | 3 | 64774819 | 64780475 |
| TU1688068 | True | 5460 | lncRNA | 0.47 | 3 | 64774819 | 64780475 |
64,728,000
64,732,000
64,736,000
64,740,000
64,744,000
64,748,000
64,752,000
64,756,000
64,756,000
64,760,000
64,764,000
64,768,000
64,772,000
64,776,000
64,780,000
64,784,000
NC_048581.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110494386 | LOC106565630 | coding | upstream | 130283 | 64608194 ~ 64625111 (+) |
| si:ch211-117k10.3 | LOC106565633 | coding | upstream | 164930 | 64581666 ~ 64590850 (+) |
| LOC110494383 | LOC106565632 | coding | upstream | 174252 | 64572003 ~ 64581346 (+) |
| nucks1a | LOC106565634 | coding | upstream | 202039 | 64527073 ~ 64553355 (+) |
| cldn19 | cldn19 | coding | upstream | 474781 | 64256904 ~ 64280613 (+) |
| LOC110494390 | klhdc8a | coding | downstream | 28181 | 64802910 ~ 64823080 (+) |
| LOC110494391 | LOC106565625 | coding | downstream | 72239 | 64846968 ~ 64881151 (+) |
| LOC110494394 | LOC106565623 | coding | downstream | 122134 | 64896863 ~ 64914194 (+) |
| LOC110494396 | LOC106565619 | coding | downstream | 221853 | 64996582 ~ 65014790 (+) |
| LOC118940493 | NA | coding | downstream | 678623 | 65453352 ~ 65454830 (+) |
| G1476020 | NA | non-coding | upstream | 25261 | 64729894 ~ 64730133 (+) |
| G1476014 | NA | non-coding | upstream | 30299 | 64724767 ~ 64725095 (+) |
| G1476011 | NA | non-coding | upstream | 32488 | 64722463 ~ 64722906 (+) |
| G1475997 | NA | non-coding | upstream | 41763 | 64713430 ~ 64713631 (+) |
| G1475842 | NA | non-coding | upstream | 126001 | 64618731 ~ 64629393 (+) |
| LOC110494389 | NA | non-coding | downstream | 90 | 64755321 ~ 64780475 (+) |
| G1476059 | NA | non-coding | downstream | 10683 | 64785412 ~ 64785613 (+) |
| G1476083 | NA | non-coding | downstream | 45237 | 64819966 ~ 64840136 (+) |
| G1476140 | LOC106565622 | non-coding | downstream | 139774 | 64914503 ~ 64918526 (+) |
| G1475820 | NA | other | upstream | 190248 | 64563374 ~ 64565146 (+) |
| tmcc2 | LOC106565656 | other | upstream | 1067304 | 63684043 ~ 63691033 (+) |
| srsf3b | LOC106565658 | other | upstream | 1092140 | 63658373 ~ 63663255 (+) |
| G1474159 | NA | other | upstream | 1537800 | 63216948 ~ 63217594 (+) |
| G1476510 | NA | other | downstream | 528688 | 65303417 ~ 65304128 (+) |
| G1476520 | NA | other | downstream | 551148 | 65325877 ~ 65327163 (+) |
| G1476569 | NA | other | downstream | 643362 | 65418091 ~ 65466767 (+) |
| G1476898 | NA | other | downstream | 1007050 | 65781779 ~ 65783335 (+) |
| G1477313 | NA | other | downstream | 1514143 | 66288872 ~ 66290448 (+) |
| G1476178 | NA | non-coding | downstream | 143947 | 64924422 ~ 64924784 (+) |
