aldh4a1 (LOC106565909)


Basic Information

Item Value
gene id aldh4a1
gene name LOC106565909
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66844021 ~ 66853631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569451.2
ACTCGCGATACAAGTAACCAGTAGGCTACATTCTCAAGATATCAGACAGTTTCGATGTATCTTATCAGTTCTTGATACATTATATCGCTGGCAGTAGTGTGTTATTATTAGATTGCCCTTTCTCTCTACATATTTTCCATTGAAACATGCTGCGTGTGAGATCAGCATTGTGTCATTCTTGGAGGGGTTTCAGGACCTTCCCCTGTGCAGCTGTTGAGGTGAAGAATGAGCCCATCCTGGGATTCAACGAGGGCAGTCCAGAGAGGGCCGAGCTGCAGAAGgccCTGGATGACCTGAAGGGGAAGACAGAGGAGATTCCCTGTGTGGTTGGGGATGAACATGTGTGGACCAAAGACATCAGATACCAGCTATCACCCTTCAACCACTCACACAAACTGGCCAAGTTTTGCTATGCTGACAAGGACCTGCTCAACCAAGCTATCTTAGCCTCTGTGGCGGCGAGGAGAGAATGGGACCTGAAACCCATCCAGGACCGAGCCCAGGTCCTCTTTAAGGCTGCCGACATCATCAGTGGACCTAAGAGAGCTGAGATTCTGGCCAAGACCATGATAGGCCAGGGCAAAACTGTGGTGCAGGCAGAGATTGATGCGGCTGCAGAGCTAATAGACTTCTTCCGGTTCAATGCGAAGCACGCTGTTGAACTGGAGAGCCAGCAGCCCCTGGACAGTGATGGTAGCACCAACACCATGCTCTACCGTGGGCTGGAGGGTTTTGTAGCTGCTGTCGCCCCATTTAACTTCACTGCAATTGGTGGAAACCTAGCGGGTACACCTGCTCTCATGggtaatgtagttctgtggaagCCTAGCGACACAGCCATGTCAGCTAGCTACGCCGTATACAATGTTCTGCGGGAGTCAGGGTTACCCCCCAACATCATCCAGTTTGTGCCAGCCGACGGACCAGTGTTTGGAGACACCATCACTTCCTCTGAACATCTGGCTGGCATCAACTTTACCGGCAGTGTCCCTACCTTCAAGCGCCTGTGGAAACAAGTGGCCCAGAACCTGGATATCTACAAGAACTTCCCTCGGGTGGGAGGAGAATGTGGCGGTAAGAACTTCCACTTTGTGCATAAGTCTGCGGATGTGCGGAGTGTGGTGACTGGGACCATCCGCTCTGCGTTTGAGTACGGAGGGCAGAAGTGCTCAGCCTGCTCCAGGATGTAtgtaccagactccctgtggcccCAGATCAAACAGGGGCTCCTGGACATCCACAAGCAGCTCAAAGTTGGAGACCCTGTGGAGGACTGGAGTACATTCTTCTCTGCTGTGATTGATGACAAGTCCTTTGCTCGGATTAAGAAGTGGTTGGACCATGCCAAGTCATCCCCTAAGTTGAACATAATTGCTGGAGGCCACTGTGATGACAAGAAGGGTTACTTTGTGGAGCCGACCATCATTGAGAGCACAGACCCACAGGAAGCCATCATGGCCGAGGAAATCTTTGGCCCagttctgtctgtctatgtttacCCTGAGAACAACTACAAGGAGGTTCTAAACCTTATAGACAACACATCACCATACGCCCTGACAGGAGCGGTCTTCGCTCTTGACAAGAATGTTGTAGATGAGGCAGCTAAGGCCTTGAGGAACGCTGCAGGAAATTACTACGTGAATGACAAGTCCACCGGCTCGATTGTCGCCCAGCAGCCATTTGGTGGCGCCAGAGCTTCAGGTACCAATGACAAACCTGGTGGTCCTCACTACGTCCTGCGATGGACATCCCCACAGGTGGTCAAGGCCACCCACGTCCCGCTCAGAGAATGGAAGTACCCATACATGGGTtaaaaagacagtactgtaccCCCTCCCTAACCATTTGGCCCTCATCCAATCCTAGCTTTGTAGAGGAATCTGTCTGATTTTTGTCCTATCCCTTTCTCCAGTCAAGACTGACAATGAAATGAAGAGGGGAAACCCTCTCCTTACTCGTCCAAGTTTTAGTCCTTTTTAGCCCATACAAGCCTGCACTGAAGCTAGACACAAGTACAAATGTAATTTTTAGCTCAGGGTTTCCCCAACCTGGTCCTTGGGACCCCAAGGGCTGCACGtttttgtcctagcactacaccgttgattcaaataatcaactaatcaagctttgattatttgaaatcaactgtgtagtgttacggcaaaaaccaaaacatgcaccccttgaggtcccgaggaccgagttggAGAAATGCTCTATTAGCTGTTCTAAATTAAAAGGGGGAGCAAAGGCGCCCCTCTCTGGCACTTCATGAGATCAGCAGGAGCTGAGCCAGATCAGATGGCCTGCTAGCTGTACA

Function

NR:

description
delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

GO:

id name namespace
GO:0010133 proline catabolic process to glutamate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006561 proline biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function
GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity molecular_function

KEGG:

id description
K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569451.2 True 2323 mRNA 0.50 15 66844021 66853631

Neighbor

gene id symbol gene type direction distance location
iffo2b LOC106565910 coding upstream 5584 66798767 ~ 66840370 (+)
akr7a3 LOC100194670 coding upstream 53647 66785516 ~ 66790374 (+)
kcnab2a kcnab2 coding upstream 156257 66566779 ~ 66780792 (+)
park7 park7 coding upstream 277581 66559477 ~ 66566440 (+)
pax7a pax7a coding upstream 316414 66465455 ~ 66527607 (+)
LOC110494429 LOC106565956 coding downstream 13580 66867211 ~ 66867881 (+)
pank4 LOC106565907 coding downstream 69069 66922700 ~ 66941538 (+)
LOC110494434 LOC106565906 coding downstream 88551 66942182 ~ 66954149 (+)
agtrap agtrap coding downstream 107460 66961091 ~ 66967232 (+)
LOC110494437 LOC106582975 coding downstream 175826 67029457 ~ 67035830 (+)
G1477761 NA non-coding upstream 14025 66829790 ~ 66829996 (+)
G1477758 NA non-coding upstream 19953 66823826 ~ 66824068 (+)
G1477751 NA non-coding upstream 29688 66813921 ~ 66814333 (+)
G1477601 NA non-coding upstream 256849 66586951 ~ 66587172 (+)
G1477748 NA non-coding downstream 3158 66856789 ~ 66857411 (+)
G1477774 NA non-coding downstream 14848 66868479 ~ 66868696 (+)
G1477775 NA non-coding downstream 17026 66870657 ~ 66870901 (+)
G1477781 NA non-coding downstream 28156 66881787 ~ 66882140 (+)
G1477784 NA non-coding downstream 34680 66888311 ~ 66888672 (+)
G1477697 NA other upstream 125333 66717373 ~ 66718688 (+)
G1477578 LOC100194703 other upstream 286509 66557037 ~ 66557512 (+)
G1477313 NA other upstream 553573 66288872 ~ 66290448 (+)
G1478504 NA other downstream 808356 67661987 ~ 67663649 (+)
G1479621 NA other downstream 1268907 68122538 ~ 68125780 (+)
G1480254 pad other downstream 2080695 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 3797312 70638204 ~ 70656059 (+)

Expression


Co-expression Network