LOC110494429 (LOC106565956)


Basic Information

Item Value
gene id LOC110494429
gene name LOC106565956
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66867211 ~ 66867881 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110494429
CTCTCAGCTCACAACTCAACTTCCTCAGAgaagcacacacactctctctctttaccagAATGGCTCCCACCTACACAAGCGACTCTGCCAACACCATGCTCTCTGCTGAAGACAAGCATAAACTAAGGAAACCAGTTGGGAAAAAGATGTGTAGAGACCACATCAACACCTGCATAGAGCAGCTCAAGACCCTGTCTGGAGAGGGAGTTCCACAAACAGGACCCCAACACCAAGCTGGAGAAGGCTGACATCCTGGAGATGACGGTGGGGTTCCTGACGCAGAAGCTGCAGCCTCAGAGCCCAGTCCCCCAGAGGGCCCACAGTGAGGGCTACTCCCAGTGCTGGAGGGAGACCCTACACTTCCTGTCTTCTAGCTCCATGAAGGACATGATGCTTCAGAACCTCCAGAGAGCTGGCCAGGACGTCTGCCCCTCCTCGCCACTCTCCTCCCAACATCAACACCACAGCCAGGGCCCAGTGAAGCAGGCCACCAGTGGTCACAAAACAGTGTGGAGGCCCTGGTAGAACCACTACTTGGAGACTCTCTATCTCACAAAC
>TU1690094
AGGGAGTTCCACAAACAGGACCCCAACACCAAGCTGGAGAAGGCTGACATCCTGGAGATGACGGTGGGGTTCCTGACGCAGAAGCTGCAGCCTCAGAGCCCAGTCCCCCAGAGGGCCCACAGTGAGGGCTACTCCCAGTGCTGGAGGGAGACCCTACACTTCCTGTCTTCTAGCTCCATGAAGGACATGATGCTTCAGAACCTCCAGAGAGCTGGCCAGGACGTCTGCCCCTCCTCGCCACTCTCCTCCCAACATCAACACCACAGCCAGGGCCCAGTGAAGCAGGCCACCAGTGGTCACAAAACAGTGTGGAGGCCCTGGTAGAACCACTACTTGGAGACTCTCTATCTCACAAA

Function

NR:

description
transcription factor HES-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110494429 False 558 mRNA 0.58 2 66867211 66867881
TU1690094 True 356 TUCP 0.58 1 66867525 66867880

Neighbor

gene id symbol gene type direction distance location
aldh4a1 LOC106565909 coding upstream 13580 66844021 ~ 66853631 (+)
iffo2b LOC106565910 coding upstream 28774 66798767 ~ 66840370 (+)
akr7a3 LOC100194670 coding upstream 76837 66785516 ~ 66790374 (+)
kcnab2a kcnab2 coding upstream 179447 66566779 ~ 66780792 (+)
park7 park7 coding upstream 300771 66559477 ~ 66566440 (+)
pank4 LOC106565907 coding downstream 54819 66922700 ~ 66941538 (+)
LOC110494434 LOC106565906 coding downstream 74301 66942182 ~ 66954149 (+)
agtrap agtrap coding downstream 93210 66961091 ~ 66967232 (+)
LOC110494437 LOC106582975 coding downstream 161576 67029457 ~ 67035830 (+)
LOC110494438 LOC106565902 coding downstream 170129 67038010 ~ 67086398 (+)
G1477748 NA non-coding upstream 9800 66856789 ~ 66857411 (+)
G1477761 NA non-coding upstream 37215 66829790 ~ 66829996 (+)
G1477758 NA non-coding upstream 43143 66823826 ~ 66824068 (+)
G1477751 NA non-coding upstream 52878 66813921 ~ 66814333 (+)
G1477774 NA non-coding downstream 598 66868479 ~ 66868696 (+)
G1477775 NA non-coding downstream 2776 66870657 ~ 66870901 (+)
G1477781 NA non-coding downstream 13906 66881787 ~ 66882140 (+)
G1477784 NA non-coding downstream 20430 66888311 ~ 66888672 (+)
G1477788 NA non-coding downstream 27744 66895625 ~ 66896017 (+)
G1477697 NA other upstream 148523 66717373 ~ 66718688 (+)
G1477578 LOC100194703 other upstream 309699 66557037 ~ 66557512 (+)
G1477313 NA other upstream 576763 66288872 ~ 66290448 (+)
G1478504 NA other downstream 794106 67661987 ~ 67663649 (+)
G1479621 NA other downstream 1254657 68122538 ~ 68125780 (+)
G1480254 pad other downstream 2066445 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 3783062 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 3971739 70809971 ~ 70847390 (+)

Expression


Co-expression Network