LOC110494440 (LOC106565900)


Basic Information

Item Value
gene id LOC110494440
gene name LOC106565900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 67468416 ~ 67743756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950494.1
ATAGAGCGCGCGGGTGAGAGAGAAGAGCATTGACTGAGAAGCATAGATTTTCATCCAACCTATATCATTTTTTTCTAATCATCGACTGCACTGCTTAACGTTGATTGTCTAGCAGGAAAATATTTTTCTACGCAGTTGAGGAACCGTTTCAGTTGACGATTATTGGTCCTCTTTGCTGTATTTAAGTGTTCTTGGAACGAATTTATCATATTTCTATTTATACTTGAACTGCATCAtgaacagtttgtgggcacctcTCGATCTCACACCTTTGGAATGGTGGGGATTACGCAGCCGACAAATGGGGAGCATGTAAACGCAGATGGAGTTTGGGATTTATTGCAAAATAAGGGAAAGATGACTGTCTTCTCTTTGTGTCTCCTCTTGTTCGCGGATCTGCTGGATTTAGCCGTTGGATATCTGACAGTAACCATTGAGCCCCTTCCTCCTGTTGTTGTGGGAGAGACTGTGACCCTGAAGTGCAACTTCAAGACTGATGGAAGACTTCGAGAGATTGTGTGGTACAGGGTCACAGACGGGGGCACCATTAAGCAGAAGATTTTCACCTACGATGCTATGTTTAATACCAATTACTCACATATGGAGGACTATCGCAAACGAGAAGACCTTGTGTACCAATCTACGGTCCGGCTCCCGGAGGTTCGGATCTCGGACAATGGGCCTTATGAGTGCCACGTGGGCATCTACGACCGAGCAACGAGAGAAAAGGTGGTCTTGGCATCGGGAAATGTCTTTCTCACCGTTATGTCTCCTCCAAACAACATCTCAGTTACGGCAGAGAACTGTCCAGCTCCATTCAGCCGGTACCAGGCCCAGAACTTCACTCTACTGTGCACTGCAAAGGGAGGCAAACCTGCCCCTTCGgtgtacTTTAAGCGAGATGGAGAGTTGATAGAGGTGATTTCCTACATCCACCCCTCAGCTGTTGCAGAGGACGGCGGTGGCTCAGCGGGGGTGCGGGGTGCCAGGCCGCTCATCAGCAGGGACCTGGACGACACCAAGCTGCAGAGGTCCCTTTCCTTGTTGGATCCAGAGGGGCGGCCAGGCCGCCTGTTCACCGATAGCCCTGAGCGTGGTCGTAACACGGGCCAGCACACCCagggccagcagcagcagcccagCCCTGCCACCGAGGTCATTCCAGAGACTGTGGTGAGCCGGGAGTTCCCCCGTTGGGTGCAGAGCACTGACCCACTCTACTACTTCAGCCACACCCACATCCCCCAGAGTGATGGCTCTGTGCTGGTGCAGGCCAGACTCACCTGGACCCTTAACCCCCAGCTGGACAATGATGCCATGTTCAGCTGTGAGGTCAAGCACCCAGCACTCTCCATGCCCATGCAGACAGAGGTCACATTGGcggCTCCTAAGGGCCCCAAGCTTTTGATGACCCCCACCAGGGCAAAGGTAGGGGACACAGTGCGCATCACTGTGCAAGGATTCCAGGTAGGCGCTGGGGTTCCTGGGAATGAGGTGTTCCCTGAGCCCCTTTTCACCTGGACCCGGGTCGGGGGCCGTCTGCTGGACGGGAGTGCCGAGTGGGATGGGAAGGAGCTGATTTTGGAGAGAGTGCCAGCCGAACTCAACGGCTCCATGTACCGCTGCACAGCCCAGAATCCCCTGGGCTCCACGGACACGCACACTCGCCTCATCGTCTTTGAAAATCCGGCCATGATGAAAAACACTCAGAATCCTAACAATGGAACCCCTCGCATGGATGTGCTTGGACCTATATGGATGGTGCTGGCCCTGGTCCTCACAGTGACTGTGGAACTGACGTGAAACCTTCCAGCCAACACACtcaatgcacacatacacaacacacacacacgtacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacatatcccaagcccctccaacacacacccacaccacacacacagtcctacaaGCCTTTTCCAGTCATCCAACAGGCCCTCCATACGTCAGTCTTTCAGGAACCAGTGCCACCACCCGATGGCCCTCCACTCTGTTTTTGTAATGAAATAATAACCAAGATtataatataaagaaaacagCATAACGTACTGAACATGAGAATAACCACCTCCAGTATACCCCTTCCCCACACCTTCTTTTTTGTTTATTGTCCCACCTCTGCCTGTTGATCAATAAAAATCAGTTGCtaaaaaagggggaaaaaagcATTTGGGTTTGTTTTGATATGTTCAAACATTGCAGGAGTTGACTGTGTAGAGAGACATGAACCGACCGGTGTTGGCAGGCCCACCACATTGACCCCACCCAATTGTCCCATTCACTGGGCTGTGCTGTACCCAATCTTTAAACTACAGATGAACAACTGGCAACTAAATACTCAATGAGAACATTGTTTTTTATTGCTAAtcggttgttgtttttttcggaTGGCTTGGAATGTGCAATAGGACTAAACGCAAAGAGAAAATGGATAATCTTCTTTTTGAGTGTATTTTGTGTACATCCGCGTAAATATTGAAGATAATCAGAGGTTTTATGGGTTCAGGTTAGGAATGGTTGATGAAGAGTTGTGAGGGTTTGCAGCAGCTCACAGCCTTTGTTTGTATTTTCTCATCCTTTCTTGCTGTTTCAAGAGATAATCCTATAGGCTGTCAGGACAGAATCATCTTTAAATGAGGATAGAAAAACAATGCAAGTACAGTATCTTACATTATGTCCGCCGTTCGGGGTTGTGGTGCATGTGACGTTTGACAATTCTTTCTCCTTTTCGTGTGTTGCAGTGCTCAACATCTCATTGTCACTGGCCTGTAATCCAGTTATTTACTTGTTGCATACTATCTTAAGTGACCTGCGTTGTGTACAATATGTAACTCttccccctgacatctactagtAGGGTCATGTTATCCACCATTCCAGGAAGATGCTCACCCGACGCAGAGTGTAAACAGGGTTGTTGCATTTGTTTCATATCACCTGTATTAAAATGGAGAGATTATCAAATCA
>XM_036950495.1
TAGAGCGCGCGGGTGAGAGAGAAGAGCATTGACTGAGAAGCATAGATTTTCATCCAACCTATATCATTTTTTTCTAATCATCGACTGCACTGCTTAACGTTGATTGTCTAGCAGGAAAATATTTTTCTACGCAGTTGAGGAACCGTTTCAGTTGACGATTATTGGTCCTCTTTGCTGTATTTAAGTGTTCTTGGAACGAATTTATCATATTTCTATTTATACTTGAACTGCATCAtgaacagtttgtgggcacctcTCGATCTCACACCTTTGGAATGGTGGGGATTACGCAGCCGACAAATGGGGAGCATGTAAACGCAGATGGAGTTTGGGATTTATTGCAAAATAAGGGAAAGATGACTGTCTTCTCTTTGTGTCTCCTCTTGTTCGCGGATCTGCTGGATTTAGCCGTTGGATATCTGACAGTAACCATTGAGCCCCTTCCTCCTGTTGTTGTGGGAGAGACTGTGACCCTGAAGTGCAACTTCAAGACTGATGGAAGACTTCGAGAGATTGTGTGGTACAGGGTCACAGACGGGGGCACCATTAAGCAGAAGATTTTCACCTACGATGCTATGTTTAATACCAATTACTCACATATGGAGGACTATCGCAAACGAGAAGACCTTGTGTACCAATCTACGGTCCGGCTCCCGGAGGTTCGGATCTCGGACAATGGGCCTTATGAGTGCCACGTGGGCATCTACGACCGAGCAACGAGAGAAAAGGTGGTCTTGGCATCGGGAAATGTCTTTCTCACCGTTATGTCTCCTCCAAACAACATCTCAGTTACGGCAGAGAACTGTCCAGCTCCATTCAGCCGGTACCAGGCCCAGAACTTCACTCTACTGTGCACTGCAAAGGGAGGCAAACCTGCCCCTTCGgtgtacTTTAAGCGAGATGGAGAGTTGATAGAGGTGATTTCCTACATCCACCCCTCAGCTGTTGCAGAGGACGGCGGTGGCTCAGCGGGGGTGCGGGGTGCCAGGCCGCTCATCAGCAGGGACCTGGACGACACCAAGCTGCAGAGGTCCCTTTCCTTGTTGGATCCAGAGGGGCGGCCAGGCCGCCTGTTCACCGATAGCCCTGAGCGTGGTCGTAACACGGGCCAGCACACCCagggccagcagcagcagcccagCCCTGCCACCGAGGTCATTCCAGAGACTGTGGTGAGCCGGGAGTTCCCCCGTTGGGTGCAGAGCACTGACCCACTCTACTACTTCAGCCACACCCACATCCCCCAGAGTGATGGCTCTGTGCTGGTGCAGGCCAGACTCACCTGGACCCTTAACCCCCAGCTGGACAATGATGCCATGTTCAGCTGTGAGGTCAAGCACCCAGCACTCTCCATGCCCATGCAGACAGAGGTCACATTGGcggCTCCTAAGGGCCCCAAGCTTTTGATGACCCCCACCAGGGCAAAGGTAGGGGACACAGTGCGCATCACTGTGCAAGGATTCCAGAATGAGGTGTTCCCTGAGCCCCTTTTCACCTGGACCCGGGTCGGGGGCCGTCTGCTGGACGGGAGTGCCGAGTGGGATGGGAAGGAGCTGATTTTGGAGAGAGTGCCAGCCGAACTCAACGGCTCCATGTACCGCTGCACAGCCCAGAATCCCCTGGGCTCCACGGACACGCACACTCGCCTCATCGTCTTTGAAAATCCGGCCATGATGAAAAACACTCAGAATCCTAACAATGGAACCCCTCGCATGGATGTGCTTGGACCTATATGGATGGTGCTGGCCCTGGTCCTCACAGTGACTGTGGAACTGACGTGAAACCTTCCAGCCAACACACtcaatgcacacatacacaacacacacacacgtacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacatatcccaagcccctccaacacacacccacaccacacacacagtcctacaaGCCTTTTCCAGTCATCCAACAGGCCCTCCATACGTCAGTCTTTCAGGAACCAGTGCCACCACCCGATGGCCCTCCACTCTGTTTTTGTAATGAAATAATAACCAAGATtataatataaagaaaacagCATAACGTACTGAACATGAGAATAACCACCTCCAGTATACCCCTTCCCCACACCTTCTTTTTTGTTTATTGTCCCACCTCTGCCTGTTGATCAATAAAAATCAGTTGCtaaaaaagggggaaaaaagcATTTGGGTTTGTTTTGATATGTTCAAACATTGCAGGAGTTGACTGTGTAGAGAGACATGAACCGACCGGTGTTGGCAGGCCCACCACATTGACCCCACCCAATTGTCCCATTCACTGGGCTGTGCTGTACCCAATCTTTAAACTACAGATGAACAACTGGCAACTAAATACTCAATGAGAACATTGTTTTTTATTGCTAAtcggttgttgtttttttcggaTGGCTTGGAATGTGCAATAGGACTAAACGCAAAGAGAAAATGGATAATCTTCTTTTTGAGTGTATTTTGTGTACATCCGCGTAAATATTGAAGATAATCAGAGGTTTTATGGGTTCAGGTTAGGAATGGTTGATGAAGAGTTGTGAGGGTTTGCAGCAGCTCACAGCCTTTGTTTGTATTTTCTCATCCTTTCTTGCTGTTTCAAGAGATAATCCTATAGGCTGTCAGGACAGAATCATCTTTAAATGAGGATAGAAAAACAATGCAAGTACAGTATCTTACATTATGTCCGCCGTTCGGGGTTGTGGTGCATGTGACGTTTGACAATTCTTTCTCCTTTTCGTGTGTTGCAGTGCTCAACATCTCATTGTCACTGGCCTGTAATCCAGTTATTTACTTGTTGCATACTATCTTAAGTGACCTGCGTTGTGTACAATATGTAACTCttccccctgacatctactagtAGGGTCATGTTATCCACCATTCCAGGAAGATGCTCACCCGACGCAGAGTGTAAACAGGGTTGTTGCATTTGTTTCATATCACCTGTATTAAAATGGAGAGATTATCAAATCA

Function

NR:

description
immunoglobulin superfamily member 21-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950494.1 False 3064 mRNA 0.49 10 67468416 67743756
XM_036950495.1 True 3042 mRNA 0.49 10 67468417 67743756

Neighbor

gene id symbol gene type direction distance location
arhgef10la LOC106565901 coding upstream 268793 67091515 ~ 67248760 (+)
LOC110494438 LOC106565902 coding upstream 382018 67038010 ~ 67086398 (+)
LOC110494437 LOC106582975 coding upstream 432586 67029457 ~ 67035830 (+)
agtrap agtrap coding upstream 501225 66961091 ~ 66967232 (+)
LOC110494434 LOC106565906 coding upstream 514267 66942182 ~ 66954149 (+)
klhdc7a LOC106565897 coding downstream 4065 67747821 ~ 67752755 (+)
dhrs3b dhrs3 coding downstream 31618 67775374 ~ 67784857 (+)
LOC110493241 LOC106565891 coding downstream 346449 68090205 ~ 68094863 (+)
si:ch211-220m17.5 LOC106565952 coding downstream 406274 68150030 ~ 68151429 (+)
LOC110494448 LOC106565889 coding downstream 533166 68276922 ~ 68320684 (+)
G1478323 NA non-coding upstream 45608 67416713 ~ 67422808 (+)
G1478094 NA non-coding upstream 377898 67089307 ~ 67090518 (+)
G1478095 NA non-coding upstream 380944 67087293 ~ 67087472 (+)
G1478035 NA non-coding upstream 450009 66919719 ~ 67018407 (+)
G1478356 LOC106565899 non-coding downstream 9600 67753356 ~ 67754494 (+)
G1478558 NA non-coding downstream 12367 67756123 ~ 67756335 (+)
G1478563 NA non-coding downstream 18038 67761794 ~ 67762001 (+)
G1479310 NA non-coding downstream 130405 67874161 ~ 67874581 (+)
LOC110494429 LOC106565956 other upstream 600536 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 633476 66798767 ~ 66840370 (+)
kcnab2a kcnab2 other upstream 687624 66566779 ~ 66780792 (+)
G1477697 NA other upstream 749728 66717373 ~ 66718688 (+)
G1477578 LOC100194703 other upstream 910904 66557037 ~ 66557512 (+)
G1479621 NA other downstream 378782 68122538 ~ 68125780 (+)
G1480254 pad other downstream 1190570 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 2907187 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 3095864 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 3434757 71178513 ~ 71180429 (+)

Expression


Co-expression Network