LOC110494452 (LOC106565886)


Basic Information

Item Value
gene id LOC110494452
gene name LOC106565886
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68401739 ~ 68408133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569516.2
CAAAGAACACACCCAACGTGACACCACACCCACGAGGTTGCTACGTGTACGTTCAAGGGGGAGGGGCACGTaagtaacaaaaaaaaagaaggaaaggAGAGCGAAGCAATTTTATTTCAACATCTTTATAGAAAGTCTAAAGTTTGGAGTCATGCCTATACGTCGTGCAGCTGGGACTCCACCCCAGGAGACACCCCCCTTGGCTGCACCAGATGGAGAGCCTGATGCCAGCTCTGAGGAATCTGCCTCtgttgaggaggagcaggaggtagCACCCGCAGCCCCAGTAGCCAAGAAGGGGGAGGGTCAAGGAGAATGTGAGGGCACAGGTGAAGGAGACCCAAAAGAGAATGGTGAGAAACCTGATGAATCGACTGGAAAGAAGACTGAGGAGAAGAAGGCTGAGGGGGAGGAGGCTGAGAAGGAagagaaagatggagtgaAAGAGAAAGTCAAGAAGCCCATTAAAAGGACCATTCCTGCCTGGGCCACCATGTCTGCCAGCAAACGTGCAACGCTCACTAATAAGAGCACCTCCACCATGCAGCCGCCTAGGATGGACGACATCCTCATTGAGGCTATTGAGTCCTGCAAGGAGAAGACTGGGGCCTCAGCCCATTCTGTCATGAAGTACATTGTGAAAAAATACCCTAACCTGGAGTTGGACAAGAGGAAATTCCTTCTCAAGAAGGCTCTCAAGAGGCAGCTGGAGAAGGGCACCATCAAACAGCTGAAGGGTAAAGGCCTTTCTGGAAGCTTTACCATTGGGAAGCAGCCCCCTAATAAATCCACTGCTAAAGGGAAGCCGATGGCAGTAGCTCCTGGGTTGAAGGCAGAGACCCTTGGGGATGCTCTGCCCCTGATCATCACACGGCTATGTGAGCCCAAAGAGGCGTCTTACATTCTGATCAAGAAATATGTGGAGCAGCACTTCCCTCAACTCAACGTGGAGCATCGGCCGGATATCCTAAAGAGTGGCCTGGTGAGAGCTGTGGACAAGGGTCAACTGGAGCAGATCACTGGAAAAGGTGCCTCTGGAACATTCCAGCTGAAGCGGGAAGGGGGCAAGTTCCTGCTTAAAGGTGGGCCCCTGGAGGACGCTATCATGACAGCCATCGTGGCCATGAACGAACCCAAGACTTGCAGTACCACCACACTCCGCAAATTCCTGTTGGAGACAAACAAGGACAGCATGGAGTACCGTGTGGTGAACAGCCTAAAGAGGACACTGCAGAAGTGTAAAATGATGGGCTGGATGGAGCAGATCACTGGGAATGGGCTAAATGGGACCTACCAGCTCTGCTACCCTTACCACCCCAGCCCAGCCATTCTGTTCCCAGAAAAACAGAAAGTGAAAGAGCAGAAAATGGCAGAGAAGGCTAAACGCAGAAAGATGGTTGACTCGTCTGATGAGGACtctgatgaggaggaagaggagtcgtctgaggaggatgaggagtCAGATGATGAACCCCCTCCTAAGAGGAAAGCTGTGAAGCGGCCACCACCTAAAGCACGTCGCCCTCCCCCCAGCAAGAAGTCACAGCCGGCAAGTCAGTCAAGGGCTAAGGGCAAGAAAAGAGCTGCCCCTGCTAAGAGATCTGCACCCCCAGTCAAGAAACCAGCACCCCAAGCTAAGAAAGCAGCACCCCCAGCCAAGAAGCCTGCTCCCCCAGCGAGGAAACCAGTGCCACCAACAAACAAACCAGTGCCCCCGGTTAAGAAACCTGCAGCTGCCAGTAAAGCTGTAGCCTCAAAGAAGACGCCCCCACCAGCTAAGGCGGCACCCACACCAGTCAAGAAAGCTGCTCCAGCGAGCAAGCCCAAAACGCCCATTGTCAAAAAGCTGACAAGCAGGGCATCAAAGCGCCCAGTGCCCAAAAAGTCACCACCTGCGAAGAAGGAAGCAGCCAAATCTGCAGTGAAGGCCAAGCCAGCAGCCCGCAAGTCCCTGAGGGAGAGGAAGTGAGCTCACTATTGACCAGCAGTGGAAGTTTAACTGTAGCTCTGAAGACTGCAGTGCTCTGCCTCTAGCCATGCTCTCTTTCGCATCATTGTTTTCTCCCTGTTTGGGGCTCTAGAATTCTTCTCTGTAGGATAGGGATGTGACAGTTATCAGTTCATGTCAATTTACTGTACTTTGAACTGTTACATTTCTGTGAACCCAACCTCTGAACACCTTATGTAGAAAGTCCTCTTCAAAAACTGTAAAATTGCCTAGGTATTGAATTGTGAAATGTCACAATTTCCCTCACACGCTTGTGTATATGCAGAGATCTAACATAAAATCAAAGTGACTTGTCTTTTAATTTTAACATTTAATCCCAATCCACTTTCCCATGTTTTAGCTTGACACATTCCTTGTATAAAAATATAGAATTCTCTACATTTAATCTAGAGTAAATTTTCAAATCTTAAAGAATATTGAGATTTATGTAAGTGAATTTGAGAGCATGAGAGCCAACTTTTCATGTAATGAATTGTGTTATTTAAATTACATTTCCTTGGTCAGTTGCAGGGCCCATGGTTAAAATACTTAATTTGATTGGAGACTGACATAAGGAAGCAATTTGTCATATTCAGTACTACTGCATAGTATTAGgggaatatttttttaatgtgcGTAACTAATGAAAGTTAATTTTATCATATAaagctataaaaaaaaatatacaaaatcgTCTACATTCTGTGTAATAGTACAAGATTTGAAGAAACTTCATTTTGAAGGTGTGCCTCATGCATACCTTGCATGCATGTATTCTTTATGTTATGCTTTTTTCCAAGTCGTTATTAAAATGGCTATTTGTACTAAA
>XM_036950516.1
TACGTTCAAGGGGGAGGGGCACTTTGGAGTCATGCCTATACGTCGTGCAGCTGGGACTCCACCCCAGGAGACACCCCCCTTGGCTGCACCAGATGGAGAGCCTGATGCCAGCTCTGAGGAATCTGCCTCtgttgaggaggagcaggaggtagCACCCGCAGCCCCAGTAGCCAAGAAGGGGGAGGGTCAAGGAGAATGTGAGGGCACAGGTGAAGGAGACCCAAAAGAGAATGGTGAGAAACCTGATGAATCGACTGGAAAGAAGACTGAGGAGAAGAAGGCTGAGGGGGAGGAGGCTGAGAAGGAagagaaagatggagtgaAAGAGAAAGTCAAGAAGCCCATTAAAAGGACCATTCCTGCCTGGGCCACCATGTCTGCCAGCAAACGTGCAACGCTCACTAATAAGAGCACCTCCACCATGCAGCCGCCTAGGATGGACGACATCCTCATTGAGGCTATTGAGTCCTGCAAGGAGAAGACTGGGGCCTCAGCCCATTCTGTCATGAAGTACATTGTGAAAAAATACCCTAACCTGGAGTTGGACAAGAGGAAATTCCTTCTCAAGAAGGCTCTCAAGAGGCAGCTGGAGAAGGGCACCATCAAACAGCTGAAGGGTAAAGGCCTTTCTGGAAGCTTTACCATTGGGAAGCAGCCCCCTAATAAATCCACTGCTAAAGGGAAGCCGATGGCAGTAGCTCCTGGGTTGAAGGCAGAGACCCTTGGGGATGCTCTGCCCCTGATCATCACACGGCTATGTGAGCCCAAAGAGGCGTCTTACATTCTGATCAAGAAATATGTGGAGCAGCACTTCCCTCAACTCAACGTGGAGCATCGGCCGGATATCCTAAAGAGTGGCCTGGTGAGAGCTGTGGACAAGGGTCAACTGGAGCAGATCACTGGAAAAGGTGCCTCTGGAACATTCCAGCTGAAGCGGGAAGGGGGCAAGTTCCTGCTTAAAGGTGGGCCCCTGGAGGACGCTATCATGACAGCCATCGTGGCCATGAACGAACCCAAGACTTGCAGTACCACCACACTCCGCAAATTCCTGTTGGAGACAAACAAGGACAGCATGGAGTACCGTGTGGTGAACAGCCTAAAGAGGACACTGCAGAAGTGTAAAATGATGGGCTGGATGGAGCAGATCACTGGGAATGGGCTAAATGGGACCTACCAGCTCTGCTACCCTTACCACCCCAGCCCAGCCATTCTGTTCCCAGAAAAACAGAAAGTGAAAGAGCAGAAAATGGCAGAGAAGGCTAAACGCAGAAAGATGGTTGACTCGTCTGATGAGGACtctgatgaggaggaagaggagtcgtctgaggaggatgaggagtCAGATGATGAACCCCCTCCTAAGAGGAAAGCTGTGAAGCGGCCACCACCTAAAGCACGTCGCCCTCCCCCCAGCAAGAAGTCACAGCCGGCAAGTCAGTCAAGGGCTAAGGGCAAGAAAAGAGCTGCCCCTGCTAAGAGATCTGCACCCCCAGTCAAGAAACCAGCACCCCAAGCTAAGAAAGCAGCACCCCCAGCCAAGAAGCCTGCTCCCCCAGCGAGGAAACCAGTGCCACCAACAAACAAACCAGTGCCCCCGGTTAAGAAACCTGCAGCTGCCAGTAAAGCTGTAGCCTCAAAGAAGACGCCCCCACCAGCTAAGGCGGCACCCACACCAGTCAAGAAAGCTGCTCCAGCGAGCAAGCCCAAAACGCCCATTGTCAAAAAGCTGACAAGCAGGGCATCAAAGCGCCCAGTGCCCAAAAAGTCACCACCTGCGAAGAAGGAAGCAGCCAAATCTGCAGTGAAGGCCAAGCCAGCAGCCCGCAAGTCCCTGAGGGAGAGGAAGTGAGCTCACTATTGACCAGCAGTGGAAGTTTAACTGTAGCTCTGAAGACTGCAGTGCTCTGCCTCTAGCCATGCTCTCTTTCGCATCATTGTTTTCTCCCTGTTTGGGGCTCTAGAATTCTTCTCTGTAGGATAGGGATGTGACAGTTATCAGTTCATGTCAATTTACTGTACTTTGAACTGTTACATTTCTGTGAACCCAACCTCTGAACACCTTATGTAGAAAGTCCTCTTCAAAAACTGTAAAATTGCCTAGGTATTGAATTGTGAAATGTCACAATTTCCCTCACACGCTTGTGTATATGCAGAGATCTAACATAAAATCAAAGTGACTTGTCTTTTAATTTTAACATTTAATCCCAATCCACTTTCCCATGTTTTAGCTTGACACATTCCTTGTATAAAAATATAGAATTCTCTACATTTAATCTAGAGTAAATTTTCAAATCTTAAAGAATATTGAGATTTATGTAAGTGAATTTGAGAGCATGAGAGCCAACTTTTCATGTAATGAATTGTGTTATTTAAATTACATTTCCTTGGTCAGTTGCAGGGCCCATGGTTAAAATACTTAATTTGATTGGAGACTGACATAAGGAAGCAATTTGTCATATTCAGTACTACTGCATAGTATTAGgggaatatttttttaatgtgcGTAACTAATGAAAGTTAATTTTATCATATAaagctataaaaaaaaatatacaaaatcgTCTACATTCTGTGTAATAGTACAAGATTTGAAGAAACTTCATTTTGAAGGTGTGCCTCATGCATACCTTGCATGCATGTATTCTTTATGTTATGCTTTTTTCCAAGTCGTTATTAAAATGGCTATTTGTACTAAA

Function

NR:

description
PREDICTED: heterochromatin protein 1-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569516.2 False 2816 mRNA 0.47 12 68401739 68408133
XM_036950516.1 True 2696 mRNA 0.48 12 68401786 68408133
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Neighbor

gene id symbol gene type direction distance location
LOC110494450 NA coding upstream 5911 68322187 ~ 68395828 (+)
LOC110494448 LOC106565889 coding upstream 81055 68276922 ~ 68320684 (+)
LOC118940544 NA coding upstream 82930 68318656 ~ 68318809 (+)
si:ch211-220m17.5 LOC106565952 coding upstream 250310 68150030 ~ 68151429 (+)
LOC110493241 LOC106565891 coding upstream 306876 68090205 ~ 68094863 (+)
LOC110494453 LOC106565884 coding downstream 804 68408937 ~ 68414206 (+)
LOC110494454 LOC106561952 coding downstream 7861 68415994 ~ 68418282 (+)
LOC110493242 kif17 coding downstream 10584 68418717 ~ 68419924 (+)
LOC110494460 LOC106565879 coding downstream 76653 68484786 ~ 68487734 (+)
LOC110494461 LOC106565878 coding downstream 118728 68526861 ~ 68593618 (+)
G1479684 LOC100286407 non-coding upstream 136361 68263965 ~ 68265378 (+)
G1479679 LOC100286407 non-coding upstream 141752 68258926 ~ 68259987 (+)
G1479675 NA non-coding upstream 155592 68245923 ~ 68246147 (+)
G1479670 NA non-coding upstream 176223 68224014 ~ 68225516 (+)
G1479668 NA non-coding upstream 179423 68222047 ~ 68222316 (+)
G1479722 NA non-coding downstream 153 68408286 ~ 68408545 (+)
G1479725 NA non-coding downstream 17350 68425483 ~ 68425951 (+)
G1479757 NA non-coding downstream 61657 68469790 ~ 68470847 (+)
G1479766 NA non-coding downstream 71478 68479611 ~ 68479914 (+)
G1479778 NA non-coding downstream 87699 68495832 ~ 68496046 (+)
G1479621 NA other upstream 275959 68122538 ~ 68125780 (+)
G1478504 NA other upstream 738090 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1533859 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1566799 66798767 ~ 66840370 (+)
G1477697 NA other upstream 1683051 66717373 ~ 66718688 (+)
G1480254 pad other downstream 526193 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 2242810 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2431487 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2770380 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2973811 71381944 ~ 71382272 (+)

Expression

LOC110494452(LOC106565886) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110494452(LOC106565886) Expression in each Bioproject

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LOC110494452(LOC106565886) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network