LOC110494454 (LOC106561952)


Basic Information

Item Value
gene id LOC110494454
gene name LOC106561952
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68415994 ~ 68418282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469276.2
ACATTGGATACATGCTACAGTGAAAGAGGGCATCAAGGAGCACATTCGATCTTACCCAAGAACCCAGAACCACTACTCTGAGATGAAGGGGGATGTACACAGAGAATACCTCAGCCCTGATCTGAATTTGTTGCGAATGTACCGACTCTACAAAGAGAAGAATACCACATCATCTGCAAAATTCTGGGTTTATAGGGACATTTTCAAACAGCAGAGTCTCAATTTTGGCCAACCCAGGAGTGACACCTGTGGCAAATGTGACGCATTCTTCACTAAGATGTCAGCAGCAACAtctgaagaggagaagaggaagattgCAGTTGAAAGTGAGTTGCACCATCGAAGCCGAAAAGGCCTACACACAGCTTCAAAGTGACACTGAGTGGGCTAAAGCCAATCCTGACTGCCATGTAATTTCTGTGGATCTACAGGGGGTGATGTACAGCCCTAATCTGACCCACTCTGATGTCCACTACCAGCGGCAGCTGTCAAATTTTAACATTTGCATCCAGGAACTTGGAAAAGAAGATCCTGCATACATGTGTGTTTGGCATGAGGGGATTGCACACCGAGGGTCCATTGAGGTGGCAAGCTGCATATTGAAGTGGGTGAAGACAAAATTCACGCCACTCACCAAACCAGAGGTGCGCAAGTTGATCATCTTCAGTGACAGATGCTGTGGGCAGAATAAGAACTGATGGATGCTCAATCTGATGTCGATACTCGTCTCTATGGGTTACTTTACCCAAGTTGAGCAGAAGTTCATGGTCTCTGGTCATCCTTTTCTTCCTTGTGATGGATCTTTTGCCACCATCGTGAAGAGGCGCAAGGTGTCAGTCCTTCATACAACTGATGATGTTTCAAAGATGATACTTGAAGCACAACCAGCAAAACCATTCAAGTTGAGGATCCTTGGAATCTGTACGCCAAACAGAGCCACAGTCTATTTGAGGGATGGAAGTCGTGGCTGATCTCCAAACCAAAACAAGGAGCTACACCTCAACCTCCCTATTTTGCGAGCCACTACCCTAGAGCATATGAGAGTCCTCtgcccattaaaaaaaaaaacaagtaccAAGATCTGATGACCATGATCAACGACTTGCCAGCTGCTGCACGCTCTTTTTATAAATCACTGCAGAGTGAATAATTTGATGTTAAACCAAGCTACGTAATTAACCGTTTTTTCTGTGAGTTTGATCCCCTGAACCTGTATAGAATGTTTAATCTGAATACATTTCAGAAGACATGTCACCCCTATTGTAGGAAGTTAAATGTGTAGTACGTGTTTTCTATGTGAATCAATGTGTATGCAATGTGTACAGCACAATATATTGAATTCATTTTAAGATGTTCCTAGTGTAGAAAATGTTATGTACAATGTGTTCTGTTGAGAATTATTTTGTGTGTGATCATTTGAACTTTTTTTAATCGGAATTAATTAAAAACAAAAgtcatcacatacagtatgtgattaTTCATTTGATCTTGATTCCCTCTTTTTTTTATTCattacaatatacagtacatctctCTGTCACCACATTTATCATTAACTCTAAGCAGTTAATACTTATGAGAGTCCTCTGTCCATCAGTCCTCTGCCCCTCAGTACAGAAGgacatttcttgtttttagcATGGGTTTAACGCAATTCAAAACTTAATTGCTGATCATAGTGTTAAACGCAAAGAGAATGGTTTTCTGAACGTTTTGTAATATTGACCTTCGGGACCTGCATAATGGACATGCATGTTGGCACATCACATTGATCCATATTTAATATGTACAAGTTGGGCTTGTTTTGATTTAATTAATTTAATTGTATTCTATTTTTGTAGTTATTCTATGGTATGTTCACATTGAGGACTTCATTTTAAATGAGACTAAGATTTCATGACTCAACTTTTAAGAAAGTAATCAGTGCTAAAGTTGATAGACCACCTTTAAATGAACCTCCATACAAATTAATGAACTACATATTGTATTTAAGTTATTTACATGAAGGGCATCTGTACTTAACATATCAGGTGTTAAAAAAGTACATCTTACAAGAGTCATGCAAAATGTCACATAtgctgttcttccacaaactgaaatcatcactggagatatactgttcttccacaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593940

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469276.2 True 2131 mRNA 0.39 2 68415994 68418282

Neighbor

gene id symbol gene type direction distance location
LOC110494453 LOC106565884 coding upstream 1788 68408937 ~ 68414206 (+)
LOC110494452 LOC106565886 coding upstream 7861 68401739 ~ 68408133 (+)
LOC110494450 NA coding upstream 20166 68322187 ~ 68395828 (+)
LOC110494448 LOC106565889 coding upstream 95310 68276922 ~ 68320684 (+)
LOC118940544 NA coding upstream 97185 68318656 ~ 68318809 (+)
LOC110493242 kif17 coding downstream 435 68418717 ~ 68419924 (+)
LOC110494460 LOC106565879 coding downstream 66504 68484786 ~ 68487734 (+)
LOC110494461 LOC106565878 coding downstream 108579 68526861 ~ 68593618 (+)
LOC101268937 LOC106565877 coding downstream 183648 68601930 ~ 68625052 (+)
LOC110494465 NA coding downstream 250850 68669132 ~ 68671682 (+)
G1479722 NA non-coding upstream 7449 68408286 ~ 68408545 (+)
G1479684 LOC100286407 non-coding upstream 150616 68263965 ~ 68265378 (+)
G1479679 LOC100286407 non-coding upstream 156007 68258926 ~ 68259987 (+)
G1479675 NA non-coding upstream 169847 68245923 ~ 68246147 (+)
G1479670 NA non-coding upstream 190478 68224014 ~ 68225516 (+)
G1479725 NA non-coding downstream 7201 68425483 ~ 68425951 (+)
G1479757 NA non-coding downstream 51508 68469790 ~ 68470847 (+)
G1479766 NA non-coding downstream 61329 68479611 ~ 68479914 (+)
G1479778 NA non-coding downstream 77550 68495832 ~ 68496046 (+)
G1480102 NA non-coding downstream 178853 68597135 ~ 68597359 (+)
G1479621 NA other upstream 290214 68122538 ~ 68125780 (+)
G1478504 NA other upstream 752345 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1548114 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1581054 66798767 ~ 66840370 (+)
G1477697 NA other upstream 1697306 66717373 ~ 66718688 (+)
G1480254 pad other downstream 516044 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 2232661 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2421338 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2760231 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2963662 71381944 ~ 71382272 (+)

Expression


Co-expression Network