LOC110494465


Basic Information

Item Value
gene id LOC110494465
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68669132 ~ 68671682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469280.2
aaacatgggaccaacactttacatgttgtgtttgtatttttattcagtatagatGACTGGACTACAGAGTGGGAGACAAATCTCTACACTCTTGATGACTCTATTCATATCAAGGCGTCTGTAACTGGCCAAGCCACCAATGAGTTGCCATGCCAACTGCAAACAATCCCATTCAATACCCCTTCATTTCTGGCCACGGGTAAAGTCATAGGAAGCACCCACGTACATCTTTTCCATCAATCTCAATTTCTTCCTCTTTCCTTGCcatgatttaatttatttttctttgtgATGTGGACTGGTTTCTCTCCAGTTGCTTTGTAGATGGCAAAatgcatgtctctctgtctgacttcAGCTTCACTAGAGAGGACAGCAGAACTGCAAATTCTTCTGGATGCCTTCCGCTTTCAAACATGGACATATCAAAAGTTTATATTAGCTGTACCTTGAGAGCAGCTTTTGCATCTAGCCCTATAACTGCTGTCAACAAAGCCTACACATATAACTCGTCTATATCCAGATACCAGAAGCCTCATGCTGGGACCTGCAATCATAAGAGCCACAGTTCAAGGCTCTGAGACCGTAGACAGACGCACAATGGAGCAGTGTAAGTACAGTGCACCGAGGGGCTTTTCTGTCCATGTGTTCAAAGTCAGGTTTAtataatggcttggtttttcccaGTAAGCATGGTTGTGAACGTATCTATTGAGTTTCTCCAGTGATTTGGCTATTTTGTTAGACTGGTTTAACATGCTTTAGTCTTTCATTACACCTGTCATAGCGGACATATTAATTGACCCATCATGCATTCCTTTATTGCAATGGTTTATAACGGCAACATGTTTGTCATTTCTGCAAGAATCTGTGAAAGTGGTGTTTAATAAATCAAAGGCAGCAGTCTGGCATGGTTGATCTCATCTCTCATGGCTATTGTGGCCACAGCATTACTGTGCAGCTTGCTGCTTTTGAGCAACAGAAAGAGCCTTCTAAACTGCACAGAAGTAAAAAGTATTATTTTAACAAGTCCCTGCACCCAAAACTTTCGTAATGTGTTTATCTTGAGAAAACAAACCATCATTATTAAGAAATGTGCATACTACTTTAATATTTACACAAATGTGTCTCAAAGGAGAAAAGGCAGTTTATCATAATGACTTAATTGAATTAAAGTTTTTTAATCCACCAAAAAACACTAATTCACGGTGTTAAATAACACTATGTGAGaacaatatttttttgtgaacaaacGTTTAATTTTGACGTTATATAGTTGGTAGCAACAAAGTCGACTACGAAATCCACAATGCAACGCTCTATGGGCTAGCTAGCAAACGTAGCTACGCAAAATAATACCAAAGACAATATCAGCATGTAACGTAGCTCTAGTTAACTGTAAAATCGTCTAAAAACTACACTATCAATTTAAGAGTCTAAgatctcaccatgttcaacctgcagatcgatGTGCCTCACAGAATGGAGTATAACATTCGCAACGGCAGATATACTTTTGAGATGGGGAAACGCGGACCAAGCTACACATTCTGGGCAATTCTGTGACAAGACGCGCTCTCATTGAAGGAGTGAATGGGAGTCTATTGGGCACTAGCTAAAAAAAAATCTTATATAAATTCGTGCTAATGTATATTTGGCAACAgcaccatgcaatgcaccctggactaGAGGCAAATAGGAACAATATGCTAGACCATTCGTCAAATTACAAATTTCTCGAGGTAGAAATATCGCAAAAATGAGCCATCACTCATTCGAAAGAAGACATCCTCCCGAGTTGACGTCGGCCAGTATTACAGTCTGACATGTATGAGCGACATTTTCGCGATCTAAAAGTTGGATTCTTATTAATTTCCAGTGTAGTGAGGGACTTTACCACAGTGCTACGTAATACCGGCCACGTCTGCCTGCTTGAACGCCAATAACTCGGATACACATGAAAAGACCCAGGGAATCGATAGAACACCACTCAGATgcacccccaaaaaatataacattcaaaatgggcgAACCTTTCCTTTAAATCACACATTTGGGGCCAGGAAATGAACATGAGCTGGTTTCCCAGACCCACATTGAGCCTACttgaaaataaatacagtaaCGTTAGATTTAACAGGAATGTCCGCATTACCAGACCCAGATTATTTTCCTTTGAGCCGCAATCATTCCGCACACATTTTGGAATGGTCAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469280.2 True 2218 mRNA 0.40 3 68669132 68671682

Neighbor

gene id symbol gene type direction distance location
LOC101268937 LOC106565877 coding upstream 44080 68601930 ~ 68625052 (+)
LOC110494461 LOC106565878 coding upstream 75514 68526861 ~ 68593618 (+)
LOC110494460 LOC106565879 coding upstream 181398 68484786 ~ 68487734 (+)
LOC110493242 kif17 coding upstream 249208 68418717 ~ 68419924 (+)
LOC110494454 LOC106561952 coding upstream 250850 68415994 ~ 68418282 (+)
LOC110494470 LOC100380857 coding downstream 256282 68927964 ~ 68950793 (+)
LOC110494469 LOC106565869 coding downstream 306018 68977700 ~ 68999543 (+)
LOC110494475 LOC106565865 coding downstream 566024 69237706 ~ 69283003 (+)
LOC110494476 LOC106565864 coding downstream 617122 69288804 ~ 69296982 (+)
LOC110494479 LOC106565861 coding downstream 677203 69348885 ~ 69354495 (+)
G1480123 NA non-coding upstream 5097 68662168 ~ 68664035 (+)
G1480120 NA non-coding upstream 8670 68631808 ~ 68660462 (+)
G1480121 NA non-coding upstream 21116 68641295 ~ 68648016 (+)
G1480103 NA non-coding upstream 70844 68597978 ~ 68598288 (+)
G1480102 NA non-coding upstream 71773 68597135 ~ 68597359 (+)
G1480126 NA non-coding downstream 35027 68706709 ~ 68708059 (+)
G1480112 NA non-coding downstream 38164 68709846 ~ 68710426 (+)
G1480144 NA non-coding downstream 39271 68710953 ~ 68712162 (+)
G1480152 NA non-coding downstream 59115 68730797 ~ 68731068 (+)
G1480157 NA non-coding downstream 66111 68737793 ~ 68738016 (+)
G1479621 NA other upstream 543352 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1005483 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 1801252 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 1834192 66798767 ~ 66840370 (+)
G1477697 NA other upstream 1950444 66717373 ~ 66718688 (+)
G1480254 pad other downstream 262644 68934326 ~ 68999183 (+)
nampt2 LOC106565851 other downstream 1979261 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 2167938 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2506831 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2710262 71381944 ~ 71382272 (+)

Expression


Co-expression Network