LOC110494469 (LOC106565869)


Basic Information

Item Value
gene id LOC110494469
gene name LOC106565869
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68977700 ~ 68999543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569560.2
ATCTCATTTCATCAATCTGCTCCTCTGCAATCTACTGTATCACCATGGATGTTTCACAGGAACAAGTTTCTATGACCAGGCACCCTAATCTCCTTCAGCACCTTAATAAGAGAAAAGCAACCGACATGCCAGTACCGTATCAACAGACATTTCGTCTCGACATTGAGAAAACTTTGAGGGCTCTTCATGTTGTTGGCACGGTGTTGAAAGTGAACCTAAACAGGAGTGCCCCTCCTAGCTCCAAGTACTTCTCTGTGCAATGTAGTCCCAGAGTGCAGTACAGGATCACCCCACCCCCACCAGAGAGTCGGACCCTCCCCACCACTCTCAATGGTAATACAATGCTTCTTATCACCATGGACACTGCCAGCGAAGTGGGAAATGATAGCAAGTTATCGGTCATGTATTATGGAGAGAAGACGGAGGTGTTAGGGAAAGCTGTCGTTCACCTCACCGCTGTTGAGATTTCTCTGGATGTAGATGCTGATCGAGATGGCCAGGTGGAGAGGAACAACCCCAACAAGGGATCGTGGATGTGGGGGCCTAATGGCCATGGTGCCATCCTACTGGTCAACTGTGACTCAGAACACACCTATGGGAAGAGGCGGGACAGTGAGTGTGCTGAGGTCACGAGAGTCTCAGATCTGAAAGACATGTCCCCAATGGTGCTGCGGACCAGTGGCCCTGCCAAGCTCCCAGAGGGCTACAAGCTGACCATGCACATCTCCCAGGGGGATGCAGAGAGTGTCAGGGTCTTCAGAACCAGGTCCACAGCAGGCATGCACCAAACACTGAAAAACCTGTTCTACAAGAGCTTTGTGAAGGACTACCCGCTGGTGCTGGGCAGTGAGGATTTGTCCAAGGAGGTCCCGTACCTCGGGGGAAACGCTGAGATGAATTTCTACGTTGAGGGCCTGAGATTCCCTGACAAAGACTTTGAGGGCCTCATCAGCATCAGCCTCAGCCTGCTGGAGCCCAGCTCTCAGGGCTTCCCTGAGACACCTATCTTTACAGACAGGGTGATGTTCCGTGTGGCTCCCTGGATCATGACACCCAACACACTCAACCCTGTGGAGGTCTTTGTCTGCAGCACATCTGATAACTACCAGTTCCTAAAGGGAATGAGGAGGCTGGTGGAGAACAGTGGGTACAAGCTGAAGGTTTGTCATGAGTACATGAACAGAGGAGACCGCTGGATGCAGGATGAGATAGAGTTTGGCTACATTGACTCTCCTCACCAACGTTTCCCTGTTGTGCTGGACTCCCCCCGAGACGGAAAACTACAGGATTTCCCTTATGATGTGCTACTGGGCCCAGACTTTGGCTATGTGACAAGGACAGCATATAATGTGGAAGTGAGCAGCTTGGATTCGTTTGGTAACCTGGAAGTTAGCCCTCCAGTTATTGTAAATGGAAAAATCTACCCTCTGGGCAGGATCATAATTGGAGTGGCTTTCCCCACGGCAACCAAGGGCCGCAACATGACAAAAGTAGTGCAAGACTTCCTTTGGGCACAGAAAGTCCAGGAGCCCATTGCACTGTTCTCTGATTGGCTTCTGGTTGGGCATGTGGATGAATTCATGACTTTTGTCCCAGCTCCTGACAAAAAGGGATTCCGGCTGCTGCTCGCCAGCCCCGACGCAGGCTACAAACTTTTCAGGGGCTTACAGAACAACGGGCATGGACAAGCCAAAATGTTTGACGGTCTTGGAGCAGAAGAAGAGATTACAGTAGATGAGATATTGAGTGATGACAAACTCAGAGCAGAAAACAACTATGTCCAGAGCTGTATAGACTGGAACAGGGATGTCCTTAAGAGGGAGCTGGGTTTAGACGACGATGATATCATTGATCTGCCCATCCTTTTCCATGTGATGGAGGAGAACAGGGCAGTGGCCTATTACCCAGACATGGTGAACATGGTTGTGTTGGGGAAGAACCTGGGCATCCCTAAACCATTTGGGCCCAAGGTGGATGGCCGCTGTGCCCTGGAGGCAGAGATGACCTCCCTCATGGAGGGCCTGGGACTCAGCTGCACATACATTGATGACTTTGCCTCCTACCACAAACTGCTGGGAGAGGTTCACTGTGGCTCTAACGTTCGCAGGGAACCCTTCTCCTTCAAGTGGTGGAACCTGGAGATGTGAGGGATTTGGGGCAAGGCATGGTTGTAGTTAGAAAGAGGGAATAAGGCTTGACGTAAACAGCAGCAACATTCGCCAGCAGCAGTCATCTTCAAACAACAACAGTAGTCCTTGTACTGTATTACCCCtttgtctttattaaacatgtatttgcctttttttttacaaaaggatGAAAAGCTATATTTATAAACAAGACTTTCCAACTTAAACAAGGGCTTGAGCGGAATATCAACGAGAACAGAAATACAATCATCTGAATTAAGCACATTGTAGGCTGAATCTGTTGTTTGGATTGGCTGAGTGCTCAATCCAAGTGTCTTGCATTTACATGTACAAACACAGGTACAGATGAACAGGACCACAGAGAAATGTGTAAGTATAATCTGGAGCCACCAGAGGGTGTGATCCAACTATTCAAGCATTTCTGAAAACTTGTGagttttaatacatttattttaagcTTTGAGATGAAAATTGTGTTTGATATATTTTGAGTTTTAGTGCCTGGAATACACACTGACTCCAAAGGCTCTCTTAAGCTGATGAAAGGTTACTTTCTCATCTTTCCAATCACATTTCAATTAATAGTTTTTGTTGAATCATAATCTTCAGAATGGTGTTTAATAATAAATAGTAGTATTTTGATGTAGTGTTCCTTACTTACACAGAGATCCTTTAGATTCAACTGAAAGATTTCCAAAGGAGTGTAAAAGGTTTATGCATTAATGCCACAACTGACAAAGTGCAACTAAATTCCATATTGGTTCTTGTTAATTTAATTGAAATAAAAAGTAATGGAAACTATGCCTTCATATCAGGTCTTTTCATTATATAAATCTGAGATGAGGGAAAATGTCTCTAATCAGGAAATGTAAAACATTACAACAAGATACAAAGGTTCCATTCATTGAGATCAGATGTCTACAAATGAATACATATATCTGTTTAGTTTTACATTCAAACCAGTTGGTGATAGATTCCAGTGGCGATATCCACCATGGGATAGATTCCTTATATGAAAGGGGATACCCTCCTACAAAGCAGCTTACTTAACAATCATTAAAAAGGCCACTTCAAGACTTGTCACAGTGTAATTCTTTTTAAAAACCAAGTCAGATTTTCAAATGATCAGCAATTAATTGAAAATGTAGTGCCGGTTTCCACATCTACACTTGTATCCCCATATTTCTCTATCGAAACTGATGTAAAGAAATAATGACTCTTTATCTGTCTGCTTTTCTAGAGAAGTTTGACTGGTTTGAAGAAACAATCTATTTCCAGCATGGTACTGTACAGTTGACATGGTTTTGCAAGCAGATTTACACCATTCACCATGCATACACATCCAAACACATACTTTAAATCAAACTAGaggttttaaaaaataaactgaagACAGTAGTCACTGGACAATAGCTTGGCTTTGGAGGCTGTGTGCTTTGGTTAGGTCACCTTGGAGGAATGTCTGACTGTGTGGTACTATCTACAGTATGGGACAGTGATGAAGACTGATGAGTAATTTAGTTTGGACACCAGACCTTATCGGTAATTCAATACTTCATGTTTTTTTCCTCAGTTAAAAGGGGCAATCTACGATTGCTACATagcttttttttacatttcaattAATTATATATACCTATTGATTCTTGAATATTACTTATAAATGCTTCATgcgcttagttcaactgtcgtaccccatcaaaaCTCAAAACATAAGCGTGTTTTACTCATTAGTTAGTAAACAAGGTaactgtaaacaaacactatatagcctcaacatggttaaaagtATAATTTTgctatcatggatggtcagtccttgcatccatagctctgtctaggaatttgagagtggttacttTTCGCCAACCCCATCACTCAGCTGGTTATCGATACAGTGGCGGGGTAAagactttgttattgtttgaactgcagattacCTCTTTAAATGGCCTGAAATACGTTGACTATACTTATGGAGTCAATAAAATATTGTCCATTCATCAACATAATCTGTCAACTGTAATTGTACAGTTTGTCAGGGGAAAGTTTGTCAGCAGCAGCATGATGATAAAAGTACCTTCTACCAAAAACATGTAACATTTACTAAATATTTCTAGTCAACATCCACCATTACACTCTTAATTGACCATTAATAAAACACAAGGCTTGGTGTGACATCAAAGGATCCGGGACACCAAGAGTAACAAATGTACAGCATCATGGTTGGACGTGAGGTTGATGGGAGCAATAATGTCAGTTCTTCCAACAATGACAACAGGACAACACCCTCTTATCCT
>XM_021569561.2
ATTTGTATTCAGAGGAGGAGTCAGACCTCTTGTTCTCAACAGACTCTCCTTTTTATCATTAAAAGCTGTCAATTCATATTACTCCATTGCAACTGAATTCAATGGGTTATAAGCAGTTATTATGGCCTATGATTTCCAAGTTAACATGATACAAAAAAGTGGTAAGCCCAACACAAATCGCCAACCTGGAGAATTAAACATATTGTGGGACTATCTTGACTACGACTGCAGTTAGTTTATCAGACTCTCCACATGGTATGATTGCACAGCAGATACAGATGGTTTCACAGCATTGGTGTGTAACAACTTCAAATTCTTGTTAAGAACTTCTCTTTTTGCTATTGTTTAGAGTAGCCTAGGCTCTGTTGTTCGGGGCAaatactgtcttgtctcattacgcacacctggttcccattccccctgattagtatgttatatatgtgccctctgttccccattgtcctGGTTGATTATTGTCCCATGTCCGTTCGTCTTGTGCTCTGCTGAATCCGCTTTCATGCCACGTGGTTTGTGCAGTTGTTATTATGGGtttcttttgtttgggttacatccctacgttatatatacagtacgtgtttgttttgggcttcgtccaAATACTTTGACACATAAGTACAATCCTTTTTGCCAGTATTCTTGTGTAGGTTGACAGTCCAGTATTTCTCCCTCTTTGGTACGTTACTCATGTAGAAGACATCATACCTCTCTGATTACTTTAGCAATGTAACTTTAGAACTAGCACTGCCACCTCTTGCTTCTGGAAATAGGGGATAATGAACTGCACTCACGGATGGTGCTCTACTGCAGTATAGGAGTGCCCCTCCTAGCTCCAAGTACTTCTCTGTGCAATGTAGTCCCAGAGTGCAGTACAGGATCACCCCACCCCCACCAGAGAGTCGGACCCTCCCCACCACTCTCAATGGTAATACAATGCTTCTTATCACCATGGACACTGCCAGCGAAGTGGGAAATGATAGCAAGTTATCGGTCATGTATTATGGAGAGAAGACGGAGGTGTTAGGGAAAGCTGTCGTTCACCTCACCGCTGTTGAGATTTCTCTGGATGTAGATGCTGATCGAGATGGCCAGGTGGAGAGGAACAACCCCAACAAGGGATCGTGGATGTGGGGGCCTAATGGCCATGGTGCCATCCTACTGGTCAACTGTGACTCAGAACACACCTATGGGAAGAGGCGGGACAGTGAGTGTGCTGAGGTCACGAGAGTCTCAGATCTGAAAGACATGTCCCCAATGGTGCTGCGGACCAGTGGCCCTGCCAAGCTCCCAGAGGGCTACAAGCTGACCATGCACATCTCCCAGGGGGATGCAGAGAGTGTCAGGGTCTTCAGAACCAGGTCCACAGCAGGCATGCACCAAACACTGAAAAACCTGTTCTACAAGAGCTTTGTGAAGGACTACCCGCTGGTGCTGGGCAGTGAGGATTTGTCCAAGGAGGTCCCGTACCTCGGGGGAAACGCTGAGATGAATTTCTACGTTGAGGGCCTGAGATTCCCTGACAAAGACTTTGAGGGCCTCATCAGCATCAGCCTCAGCCTGCTGGAGCCCAGCTCTCAGGGCTTCCCTGAGACACCTATCTTTACAGACAGGGTGATGTTCCGTGTGGCTCCCTGGATCATGACACCCAACACACTCAACCCTGTGGAGGTCTTTGTCTGCAGCACATCTGATAACTACCAGTTCCTAAAGGGAATGAGGAGGCTGGTGGAGAACAGTGGGTACAAGCTGAAGGTTTGTCATGAGTACATGAACAGAGGAGACCGCTGGATGCAGGATGAGATAGAGTTTGGCTACATTGACTCTCCTCACCAACGTTTCCCTGTTGTGCTGGACTCCCCCCGAGACGGAAAACTACAGGATTTCCCTTATGATGTGCTACTGGGCCCAGACTTTGGCTATGTGACAAGGACAGCATATAATGTGGAAGTGAGCAGCTTGGATTCGTTTGGTAACCTGGAAGTTAGCCCTCCAGTTATTGTAAATGGAAAAATCTACCCTCTGGGCAGGATCATAATTGGAGTGGCTTTCCCCACGGCAACCAAGGGCCGCAACATGACAAAAGTAGTGCAAGACTTCCTTTGGGCACAGAAAGTCCAGGAGCCCATTGCACTGTTCTCTGATTGGCTTCTGGTTGGGCATGTGGATGAATTCATGACTTTTGTCCCAGCTCCTGACAAAAAGGGATTCCGGCTGCTGCTCGCCAGCCCCGACGCAGGCTACAAACTTTTCAGGGGCTTACAGAACAACGGGCATGGACAAGCCAAAATGTTTGACGGTCTTGGAGCAGAAGAAGAGATTACAGTAGATGAGATATTGAGTGATGACAAACTCAGAGCAGAAAACAACTATGTCCAGAGCTGTATAGACTGGAACAGGGATGTCCTTAAGAGGGAGCTGGGTTTAGACGACGATGATATCATTGATCTGCCCATCCTTTTCCATGTGATGGAGGAGAACAGGGCAGTGGCCTATTACCCAGACATGGTGAACATGGTTGTGTTGGGGAAGAACCTGGGCATCCCTAAACCATTTGGGCCCAAGGTGGATGGCCGCTGTGCCCTGGAGGCAGAGATGACCTCCCTCATGGAGGGCCTGGGACTCAGCTGCACATACATTGATGACTTTGCCTCCTACCACAAACTGCTGGGAGAGGTTCACTGTGGCTCTAACGTTCGCAGGGAACCCTTCTCCTTCAAGTGGTGGAACCTGGAGATGTGAGGGATTTGGGGCAAGGCATGGTTGTAGTTAGAAAGAGGGAATAAGGCTTGACGTAAACAGCAGCAACATTCGCCAGCAGCAGTCATCTTCAAACAACAACAGTAGTCCTTGTACTGTATTACCCCtttgtctttattaaacatgtatttgcctttttttttacaaaaggatGAAAAGCTATATTTATAAACAAGACTTTCCAACTTAAACAAGGGCTTGAGCGGAATATCAACGAGAACAGAAATACAATCATCTGAATTAAGCACATTGTAGGCTGAATCTGTTGTTTGGATTGGCTGAGTGCTCAATCCAAGTGTCTTGCATTTACATGTACAAACACAGGTACAGATGAACAGGACCACAGAGAAATGTGTAAGTATAATCTGGAGCCACCAGAGGGTGTGATCCAACTATTCAAGCATTTCTGAAAACTTGTGagttttaatacatttattttaagcTTTGAGATGAAAATTGTGTTTGATATATTTTGAGTTTTAGTGCCTGGAATACACACTGACTCCAAAGGCTCTCTTAAGCTGATGAAAGGTTACTTTCTCATCTTTCCAATCACATTTCAATTAATAGTTTTTGTTGAATCATAATCTTCAGAATGGTGTTTAATAATAAATAGTAGTATTTTGATGTAGTGTTCCTTACTTACACAGAGATCCTTTAGATTCAACTGAAAGATTTCCAAAGGAGTGTAAAAGGTTTATGCATTAATGCCACAACTGACAAAGTGCAACTAAATTCCATATTGGTTCTTGTTAATTTAATTGAAATAAAAAGTAATGGAAACTATGCCTTCATATCAGGTCTTTTCATTATATAAATCTGAGATGAGGGAAAATGTCTCTAATCAGGAAATGTAAAACATTACAACAAGATACAAAGGTTCCATTCATTGAGATCAGATGTCTACAAATGAATACATATATCTGTTTAGTTTTACATTCAAACCAGTTGGTGATAGATTCCAGTGGCGATATCCACCATGGGATAGATTCCTTATATGAAAGGGGATACCCTCCTACAAAGCAGCTTACTTAACAATCATTAAAAAGGCCACTTCAAGACTTGTCACAGTGTAATTCTTTTTAAAAACCAAGTCAGATTTTCAAATGATCAGCAATTAATTGAAAATGTAGTGCCGGTTTCCACATCTACACTTGTATCCCCATATTTCTCTATCGAAACTGATGTAAAGAAATAATGACTCTTTATCTGTCTGCTTTTCTAGAGAAGTTTGACTGGTTTGAAGAAACAATCTATTTCCAGCATGGTACTGTACAGTTGACATGGTTTTGCAAGCAGATTTACACCATTCACCATGCATACACATCCAAACACATACTTTAAATCAAACTAGaggttttaaaaaataaactgaagACAGTAGTCACTGGACAATAGCTTGGCTTTGGAGGCTGTGTGCTTTGGTTAGGTCACCTTGGAGGAATGTCTGACTGTGTGGTACTATCTACAGTATGGGACAGTGATGAAGACTGATGAGTAATTTAGTTTGGACACCAGACCTTATCGGTAATTCAATACTTCATGTTTTTTTCCTCAGTTAAAAGGGGCAATCTACGATTGCTACATagcttttttttacatttcaattAATTATATATACCTATTGATTCTTGAATATTACTTATAAATGCTTCATgcgcttagttcaactgtcgtaccccatcaaaaCTCAAAACATAAGCGTGTTTTACTCATTAGTTAGTAAACAAGGTaactgtaaacaaacactatatagcctcaacatggttaaaagtATAATTTTgctatcatggatggtcagtccttgcatccatagctctgtctaggaatttgagagtggttacttTTCGCCAACCCCATCACTCAGCTGGTTATCGATACAGTGGCGGGGTAAagactttgttattgtttgaactgcagattacCTCTTTAAATGGCCTGAAATACGTTGACTATACTTATGGAGTCAATAAAATATTGTCCATTCATCAACATAATCTGTCAACTGTAATTGTACAGTTTGTCAGGGGAAAGTTTGTCAGCAGCAGCATGATGATAAAAGTACCTTCTACCAAAAACATGTAACATTTACTAAATATTTCTAGTCAACATCCACCATTACACTCTTAATTGACCATTAATAAAACACAAGGCTTGGTGTGACATCAAAGGATCCGGGACACCAAGAGTAACAAATGTACAGCATCATGGTTGGACGTGAGGTTGATGGGAGCAATAATGTCAGTTCTTCCAACAATGACAACAGGACAACACCCTCTTATCCT

Function

NR:

description
protein-arginine deiminase type-2-like isoform X1

GO: NA

KEGG:

id description
K01481 E3.5.3.15; protein-arginine deiminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569560.2 False 4450 mRNA 0.43 17 68977700 68999543
XM_021569561.2 True 5060 mRNA 0.43 17 68981312 68999543

Neighbor

gene id symbol gene type direction distance location
LOC110494470 LOC100380857 coding upstream 26907 68927964 ~ 68950793 (+)
LOC110494465 NA coding upstream 306018 68669132 ~ 68671682 (+)
LOC101268937 LOC106565877 coding upstream 352648 68601930 ~ 68625052 (+)
LOC110494461 LOC106565878 coding upstream 384082 68526861 ~ 68593618 (+)
LOC110494460 LOC106565879 coding upstream 489966 68484786 ~ 68487734 (+)
LOC110494475 LOC106565865 coding downstream 238163 69237706 ~ 69283003 (+)
LOC110494476 LOC106565864 coding downstream 289261 69288804 ~ 69296982 (+)
LOC110494479 LOC106565861 coding downstream 349342 69348885 ~ 69354495 (+)
LOC118940683 NA coding downstream 351900 69351443 ~ 69351518 (+)
LOC118940682 NA coding downstream 354277 69353820 ~ 69353895 (+)
G1480277 NA non-coding upstream 46233 68931226 ~ 68931467 (+)
G1480276 NA non-coding upstream 46602 68930836 ~ 68931098 (+)
G1480174 NA non-coding upstream 219014 68758420 ~ 68758686 (+)
G1480170 NA non-coding upstream 222015 68754789 ~ 68755685 (+)
G1480162 NA non-coding upstream 233574 68743549 ~ 68744126 (+)
G1480732 NA non-coding downstream 132404 69131947 ~ 69132153 (+)
G1480768 NA non-coding downstream 165452 69164995 ~ 69167365 (+)
G1480846 NA non-coding downstream 310154 69309697 ~ 69309963 (+)
G1480851 NA non-coding downstream 315675 69315218 ~ 69315569 (+)
G1480852 NA non-coding downstream 316754 69316297 ~ 69316738 (+)
G1479621 NA other upstream 851920 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1314051 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2109820 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2142760 66798767 ~ 66840370 (+)
G1477697 NA other upstream 2259012 66717373 ~ 66718688 (+)
nampt2 LOC106565851 other downstream 1651400 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 1840077 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 2178970 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2382401 71381944 ~ 71382272 (+)
G1484782 NA other downstream 3305180 72304723 ~ 72305412 (+)

Expression


Co-expression Network