LOC110494476 (LOC106565864)


Basic Information

Item Value
gene id LOC110494476
gene name LOC106565864
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69288804 ~ 69296982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569576.2
CTTTTAAACTTCAGAGCGCTGATCTTTAACTGTAGCAGACAGATGCTTCCCTGTTGTATTCATGTACTACACAGTTACATTTTATCGTGTGAATATAATTTGAAACTTCACACTGATTTGGAAACGTTGTCTGAAGACTCAGCACAATTGCTGGCATGCAGAATGCGAACCCAATAGAGGAGGTGGGAGGCGACACATCCTGTGATGTGCCCTGTCTCCAGAAACTTGACTCCCCAACAGGGAGCCCTCCCAAACAAGCCTCTCTTGCCGATATGATTGAGTTTGAGAATTGTGTTTCCAATCTCAGCCTTGCACATGAGATAGTGATGAACAGAGACTTCAGCTTCACACAGAACAGCCCACCCAAAGACAGCTTGCAAGGCAGAATATCTGACATAGTTCACAGTGCTTTCTGGGACTGTCTTCGTGAGCAGCTTTCATGCAGCCCTCCAGACTATGTCCATGCTGTCATTCTGCTCCAAGAGGTGAAAACTACCGTGCTGTCCCTGCTCCTGCCTGGCCACGTGCGTCTGAAGGCCCAGGTGGAGGAGGTTCTGGACCTGGAGCTGATCCAGCAGCAGGCAGATCACGGGGCCCTGGACCTGCAAAGATTGTCAGGCTACATCATCAATACCATGGCCTCCCTGTGTGCCCCTGTACGGGACCCAGAGATCAAGACACTACGGGATCTTTCGGACCCAGTGGAGCTCTTCAGGGAGATCTTCAGAGTCCTTGGCCTGATGAAGACAGACATGGTCAACTTCACTGTACAGAGCCTCAGACCTAATCTTCTTCAGCAGGCGGTCCAATACGAGCAGGCCAAGTTCCAGGAGATCCTGGAGAAGCAGCCTGAGTTCCTGGACAAGACCACCGTTTGGCTTCAGGTGGCAGCACGAGAGGAGGCATTGGTCAGTGCTCAGTCTGACCTTGACACTGGGACTCCCAAGCCACGTGGTCCATTAAGTCCGACTGCCGTCCTGAACAGGGCTTACCTGCAACTGCTGAGCTGGGACCCCCATGACCAGAACTACCCTGAGaCAGTTCTGATGGACAGAGCCCGCATAGATGCACTGGGGCAGAGGCTGAGTCTGCTGGTTCTTGAGGCATCAGTTCTGCTGTTGACTAGCACACAGTGTGGGGCCGCTGTTTTCTCTCTACAGGGGTTTGTAGGTAAACTCAAGCAGACCATCACTGCCCTGCTGGAGGGCAGTCACAATAGGGACTTTGACCTGCAGGGGGCGTTGCTGGGGCTGAGGGAGCAGGTGCTGGTGCAGGTGAAGGAGGCTCTGATCACCCAGGAAGGACCAGCACTGCCTCAGGACAGTGAAGATTTGCTTAAGGGACAGATCTCAGACCTGGCCAAGGACAACAACCCCATCCACACTCTCATAGGAGAAAGAGTGCAAGGCTACCTCCAGGCCATGCTAGAGGGAGGCCCCACTAAAAAGAGTCCGTCCATGCCCCCTGCCCTGAGGCTGCTGAGTGCTGAGGTGGCAGAACTGGGAATGGCCTTTGGGCGAATAGTCCATTTCAACCGCTCAGTTTTCGGCCCCTTCTACGTCCCCATCCTAAGGAAGAAGCTGTTTCTGTCGGGAGAGGCCGAGATGGGAGAGGACTCCCGCTAGTCCCCCGAACACCTCCGGTCCCCTGCATAAGCTGCCATTCAACATTTACACAATGTAGAGCAGGGTTCCCAAACTGGTGACCCGCGGGCCAAATCTGGCACGCCAACAATATTATTTGGCTCACCCAAAGACCCCCAAATTCAatttaaatatgtatatatatatataaaaattaaaaaaatgtatacaaatctCAAAACCCCCCAAATGCAATGTCCCAAGAAGGAAGTTACCCTACCTAAGTAATGCAAAAGTTAAGTTAACTTCATTCATGAGGAGAGAGAATGCAGGAGACAGTCAACTAATAAAGCTGGCAACGGACCATTTTGTGGTGCTGAAACCTAAAGCTGCAACCACAGCAAAATCAATAGGAGGTGAACAGCAGCTGGTGCTGAAAATATAGATAACCTGTTATACAAGTGTTGCACAGCGACAGATGGAGAAAACCTACACCAGTCGAGTAATTCATTTCAACAATAATCTTCGttttaatttgactttacaaACAAGAAGAGGGCTTAATTGTCTTCTGAGCCTAGGCCTACATAAAATAACAGCTGGCTGTGGTATGCCATAAGGCTTAACAGTATctttcacaagaaaaaatatatGGCCTAATAGAAgtgggattaaaaaaaaaaaaaattacaaggTCTCCTTACAATTGCAACTGGCCAAAAATGGAGCATCCTAGATTAAACAATAATTTAAAGGAAAAAAGGTGAATGTCTATCAGGACAGCCTGCTCCTATAACGACAGAACAAACAGATAATACTGTCAGCTTGAGACCTAAATATCCCTGGATAAGCACACAATAATGTTAGTATTTACTAAGTACAGTCATATAGGCCACTAAGTTACTCACTCAATGGGAAATGTTGCATTTCCCCTCGATCTTATGGATGTCACGTGAGATGGATGTGATTTTGATGCGCAGGCAGTCAACAATTGTCTTGTGTGAAAGCCGGTTCCTGTCCTGAGTCTATATTGCGTTCATAGAGGAAAATGAGGACTCGCAGGATTAAGTCGATCCAAACATTGTTAGCACATGAAATGCACGTTTCTTTATTCGCTGTATTCCTGAGCATGCCACCCAAAACGCACACAAGGACTCGGTACCCCTGAGCGCATCCCTGATTTGGCTTGATGTCTGTAATTCAATCAGCTCAGTTTGAATTGCGGCCTAATTTTTAaaattttaactttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggcctacccataccaaacccggacgacgctgggccaattgtgcgccaccctatggggcttctaatcacggccggatgtgattcagcctggattcgaaccagggactgtagacgcctcttgcaccgagatgcagtgccttagactgcagctccactcgggagcccaatccAGCGAGGGTATCGTTTTCTTAGCAAGGGAGGAGTGTTCTCCACCTGGGCAGACTGTGAGAGGAGCACGTACAAACGCAATGATATCCATGGGCATTCTGTAGTCTTCAAATCTGGTGGAGGAGTTGTCAGCCAAAGAAGCAGTTTATGTAGCTTGCAGTTAACGCTTAAATGTTTCTGCGTAGGGCCTCTGTCTCAGGCGGGAAGACCACCTTGAAAGTTCCATGCTTAGATTCATAATAACGTATGAGATTAAATGATTTGCAAACAgcaacattttaatttaaaataaGACACACTGGCTTGGCATTGGGAAAATATGGTAAGATGAATGCAATCTCTTtgtacattttccctgatacTTATTGAGAGCGACATTTTCTCTTGCTATCAAGCCAATTGTTCAGAACGAATGTTGATGTTAAAAAGTATTAGTTAGTGTAGGCTACAGTAAACCTGTTTTTCCCCACCAATCAACACACAGTGAAATAGACAAAAATAATAACTGAATAGAGACATGGTGATTTTGTGAACGTAATCAGATCAAAATTATTGTTATTGTCACAGAATGTATTATGTAGTGATCAGATGTGTTAAAAATGTTGTTCAATTTGTAGTGTAGGCCAATTAATTGTGCTATTATTATATACTAATTTGGTTCTGGCCCGCTGACTATTAGCTCAGAGACAAATTGGGCCAAGGGCCAAACTTAGTTGACGAACCCTGATGTAGAGtgtttatactgtatatttagattttagaatatacactgctcaaaaaaataaagggaacacttaaacaacacaat

Function

NR:

description
T-complex protein 11-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569576.2 True 3854 mRNA 0.46 10 69288804 69296982

Neighbor

gene id symbol gene type direction distance location
LOC110494475 LOC106565865 coding upstream 5801 69237706 ~ 69283003 (+)
LOC110494469 LOC106565869 coding upstream 289261 68977700 ~ 68999543 (+)
LOC110494470 LOC100380857 coding upstream 338011 68927964 ~ 68950793 (+)
LOC110494465 NA coding upstream 617122 68669132 ~ 68671682 (+)
LOC101268937 LOC106565877 coding upstream 663752 68601930 ~ 68625052 (+)
LOC110494479 LOC106565861 coding downstream 51903 69348885 ~ 69354495 (+)
LOC118940683 NA coding downstream 54461 69351443 ~ 69351518 (+)
LOC118940682 NA coding downstream 56838 69353820 ~ 69353895 (+)
LOC110494481 spcs1 coding downstream 63297 69360279 ~ 69362518 (+)
LOC110494482 LOC106565858 coding downstream 74705 69371687 ~ 69429659 (+)
G1480768 NA non-coding upstream 121439 69164995 ~ 69167365 (+)
G1480732 NA non-coding upstream 156651 69131947 ~ 69132153 (+)
G1480255 NA non-coding upstream 288007 68954449 ~ 69000797 (+)
G1480258 NA non-coding upstream 305069 68937277 ~ 68983735 (+)
G1480254 pad non-coding upstream 306487 68934326 ~ 68999183 (+)
G1480846 NA non-coding downstream 12715 69309697 ~ 69309963 (+)
G1480851 NA non-coding downstream 18236 69315218 ~ 69315569 (+)
G1480852 NA non-coding downstream 19315 69316297 ~ 69316738 (+)
G1480853 NA non-coding downstream 21054 69318036 ~ 69318261 (+)
G1480855 NA non-coding downstream 25808 69322790 ~ 69323026 (+)
G1479621 NA other upstream 1163024 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1625155 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2420924 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2453864 66798767 ~ 66840370 (+)
nampt2 LOC106565851 other downstream 1353961 70638204 ~ 70656059 (+)
LOC110494494 atxn7 other downstream 1542638 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1881531 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2084962 71381944 ~ 71382272 (+)
G1484782 NA other downstream 3007741 72304723 ~ 72305412 (+)

Expression


Co-expression Network