LOC110494481 (spcs1)



Basic Information


Item Value
gene id LOC110494481
gene name spcs1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69360279 ~ 69362518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021569588.2
TTGCCTGCATCAACAGTCTGGGGTCCTTCGAAATACTACGTATGCTTTTTGAAACCGGAAGCCTAACCAGACaaattaaatactttttcttcTTTCATCTGATTATCTAACATAGCAAGATGTTGTCAATATTCAACTCCATTCCAACACACATGGATTATAAAGGACAGAAACTGGCAGAGCAGATCTTCCAAGGAATCATACTTGTCTCAGCGGTGATTGGATTTGTTTACGGCCTCATCATTGAACAGTTTGGGTGGACTGTATACATAGTGTTAGGAGGTTTCGCTGTGTCTTGTTTGCTGACCCTGCCCCCCTGGCCCATGTACAGACAGAACCCCCTCTCCTGGCAGCCAGCCCTACCAGAGACTACGGGAGAAACCCAGCAAAAGCCTCAGGAGAatctgaagaagaagaagcacaAGTAGCTCATGAATGTTTGTACCAGTTTGCCCAAGACACGTTTTGTAACTGAAAGCAACCATCATTGTTTGTCTGTACAATAAATACTTGTTTGAAGGACAAAAGGAAGGAA

Function


symbol description
spcs1 Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human SPCS1 (signal peptidase complex subunit 1).

NR:

description
signal peptidase complex subunit 1-like

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12946 SPCS1; signal peptidase complex subunit 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021569588.2 True 535 mRNA 0.43 4 69360279 69362518

Neighbor


gene id symbol gene type direction distance location
LOC110494479 LOC106565861 coding upstream 5784 69348885 ~ 69354495 (+)
LOC118940682 NA coding upstream 6384 69353820 ~ 69353895 (+)
LOC118940683 NA coding upstream 8761 69351443 ~ 69351518 (+)
LOC110494476 LOC106565864 coding upstream 63297 69288804 ~ 69296982 (+)
LOC110494475 LOC106565865 coding upstream 77276 69237706 ~ 69283003 (+)
LOC110494482 LOC106565858 coding downstream 9169 69371687 ~ 69429659 (+)
LOC110494487 ptprg coding downstream 737853 70100371 ~ 70415005 (+)
c17h3orf14 cssa12h3orf14 coding downstream 1058738 70421256 ~ 70429407 (+)
nampt2 LOC106565851 coding downstream 1275686 70638204 ~ 70656059 (+)
LOC110494491 synpr coding downstream 1309133 70671651 ~ 70712982 (+)
G1480872 NA non-coding upstream 18981 69341087 ~ 69341298 (+)
G1480870 NA non-coding upstream 21213 69338758 ~ 69339066 (+)
G1480864 LOC106565863 non-coding upstream 26659 69332905 ~ 69333620 (+)
G1480860 NA non-coding upstream 32233 69327838 ~ 69328046 (+)
G1480859 NA non-coding upstream 32500 69327445 ~ 69327779 (+)
G1480883 LOC106583014 non-coding downstream 1267 69363785 ~ 69363993 (+)
G1480884 NA non-coding downstream 1612 69364130 ~ 69365532 (+)
G1480885 LOC106565859 non-coding downstream 3054 69365572 ~ 69366645 (+)
G1480892 NA non-coding downstream 5721 69368239 ~ 69368894 (+)
G1480889 nek4 non-coding downstream 6867 69369385 ~ 69369639 (+)
G1480254 pad other upstream 361096 68934326 ~ 68999183 (+)
G1479621 NA other upstream 1234499 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1696630 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2492399 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2525339 66798767 ~ 66840370 (+)
LOC110494494 atxn7 other downstream 1477102 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1815995 71178513 ~ 71180429 (+)
G1483638 NA other downstream 2019426 71381944 ~ 71382272 (+)
G1484782 NA other downstream 2942205 72304723 ~ 72305412 (+)

Expression



Co-expression Network