LOC110494482 (LOC106565858)


Basic Information

Item Value
gene id LOC110494482
gene name LOC106565858
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69371687 ~ 69429659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569590.2
TTGTGTGTTGGCCACTCCCTCCGCTCTTTGCCTGACGTCAGGAGAGTGCTGATGGGGGGGTGTCGAATCCAGTTTTTCGGCGAACGCCGCGAGTCTAATTTGGAGAAGCAGTGAAGAAAGAATCGACCTTTGAGATCGTGCAATTTACAGtaTTGTAGCCGACCGACAGAAAAGAAAGATGCCTTTGGGTGACGATGGACATTCCTGGAAGAAGAAAACATCAGATGTGAAAGAAAACTACGACTTCAAGGAGATCCTGGGGACGGGGGCTTTCTCCGAGGTGGTCCTAGCAGAAGAGAAAAGGACCCAGAAACTGGTGGCCATCAAATGCATCCCTAAGAAAGCCCTGGAGGGCAAAGAAAACAGCATTGAGAACGAGATTGCTGTCCTACACAAgttAAAACATGCCAACATTGTTTCCCTGGAGGACATATTTGAGAGTAAAACCCACCTCTACTTGATTATGCAGCTGGTGTCTGGTGGGGAGCTGTTTGATAGGATTGTGGAGAAGGGATTTTACACAGAGAAAGATGCCAGCAAGCTCATTCAGCAGATCCTGGATGCTGTCAAATACCTCCATGACATGGGCATCGTACACCGCGACCTGAAGCCGGAGAACCTTCTGTACGACAGTATGGAGGAGGACTCTAAGATCATGATCAGTGACTTTGGCCTGTCCAAGATCGAGGGATCTGGAAGTGTCATGTCCACAGCCTGCGGAACACCAGGATACGTGGCCCCTGAAGTGTTGGCCCAGAAACCCTACAGCAAGGCGGTGGACTGCTGGTCTATCGGGGTCATCGCCTACATCCTTTTGTGTGGATACCCTCCGTTCTATGATGAGAATGACGCCAAGCTCTTTGAGCAGATCCTGAAGGCTGACTATGAGTTTGACTCTCCGTACTGGGACGATATCTCTGACTCAGCCAAAGACTTCATAGTTCACTTGATGGAGAAGGACCCCAGGATACGCTACACATGTGACCAGGCTTTGCAGCACCCCTGGATCGCTGGTGACACAGCTCTAGATAAGAACATCCATGAGTCTGTCAGTGCCCAGATCAAGAAGAACTTTGCCAAGAGCAAGTGGAGGCAAGCGTTTAACGCCACGGCAGTGGTGCGTCACATGAGGCGTCTGCAGCTGGGCACCAGTCAGGAGGGCCCCAGCCAGACCACCCTGCCCAGCACCCTCCGAGACCACCTACTGCTGCCCGAGGCCACAGAGACAGAGCACACCACCGAGTCTCCTTGCGAGGGATGCTGCTCCCAGAGTGCTGATGGGGGGGCTGAGCGCGACCCCCTCTCCAACTGCACCTACCGCTGCCATCCAACCAGTCTGGTCTGATCCCCGCCCAGCAATGGCTTTCCCATGTATTTACCTCTGGACACCAGCGAACTCCCCAGGAGTACAGAGTTGTTCCAGTGCCCTGCCAACAGGGGGGGCAGGCGGGTTATGAATTCAGGTTGGGGAGGAGGGACTTGATGCCAACAAGAGGAGGTAATTTGAACGGATTGGGGGAGATGAGGAgaacaaagaggaggagaggtgtggtgCCCAGAGTAATCCTGGGTATTATTTTTTGAGGTGCGGGACAAACTGTTTACTCGTCCTTTTAAAATGTGTGTCTGCTTTTTACATTTCTGCATTTATGTACATGTTGTTTTCTATCTTAATTATCCTTCCCCTTTGACAACTTCTAGAAAGAGAATCCACTAATGATATCTGCATGGTCAGAAGACAGATCCCTATTGGAAACATGGGTATTATAGCATGAAAGGTCTATTGCACAATCATGTATGGTGGTAACCATTGTGTTATAGTTCCTGTACTGCAGATACACATCTTTATGACGATAATAAGTCTAGCCCCCCAGAATTATAATTGTATGGCTTTgttgtattttatatttgtatAAATGTAGCCTTACAATACACAGATGCATTCACCTAATACCACTGCTGGAGAATCCATGTGGGAATACTCCATCTATTGGACtatatattttcttttttttctcagcATGTTTGTGCTTCACCACTGTAAGTTTGTGGTTGTGCTCCCCAGGCTTGTAACAGAACAAGGCTTTCTGATTTGAACTAATTCAGCACAGGGACTTCCTCTCTATGCCTTTAGGACAACGTCAAAGGTTTCTTTTCTCGTAGCTTTTACAAATTTGAAGATACACCTATATCTCTGTACAGTTAATGCAGCATTAGAGGCAATTTTCATTTCTATCATTGTATTGTTGTATATATTTCATTGTGGTAATGGAATCAGTAAAATACAGACTTTTCTCTTCTGTCTAGATCTCTTTCCCACTTGAGAAGTGTAATACCTCAAGGGAGATAGACTTACATACACAGCCATTCCTCTTAGTACTAAGAATAGGCCTCCGTTAACCCACAGTTTTTACTCCTTGATGTTTCTTAAAAGCCACACTCTTCCCTATGGGGGGAATATGATCCCGTTGATAAAGCTGCTCAAGACTTAATCCATTATAGATATTACTGTAAGACCATGTAGAATGAAATGAGGTCCAGCCTTTCCTCAACCCAAAGCAGGGTGTGGATGTTTTTAACTAAAGACACATTTGTAAGTGTAGATACTTATCTGACCATGTAGATACTACTAACGTTCCCACTTTGACTACTCTTCCATGGATCTTACCTCCATTCATATGTTGGTTGTTTTCCGAGCCAATGTATCTGTACAGAGAGAATTTTAATTAAAGAATGTAAATATACA
>XM_036950541.1
GTCACAGGTTTCAGAAACTCCCAGTTTGTCAAACTGCCTTCTCATATATGTCAGCACTtttctgtatgtgtgtttctTCTGTCCACTGCGCAGCAATGGGAAACCAtaTTGTAGCCGACCGACAGAAAAGAAAGATGCCTTTGGGTGACGATGGACATTCCTGGAAGAAGAAAACATCAGATGTGAAAGAAAACTACGACTTCAAGGAGATCCTGGGGACGGGGGCTTTCTCCGAGGTGGTCCTAGCAGAAGAGAAAAGGACCCAGAAACTGGTGGCCATCAAATGCATCCCTAAGAAAGCCCTGGAGGGCAAAGAAAACAGCATTGAGAACGAGATTGCTGTCCTACACAAgttAAAACATGCCAACATTGTTTCCCTGGAGGACATATTTGAGAGTAAAACCCACCTCTACTTGATTATGCAGCTGGTGTCTGGTGGGGAGCTGTTTGATAGGATTGTGGAGAAGGGATTTTACACAGAGAAAGATGCCAGCAAGCTCATTCAGCAGATCCTGGATGCTGTCAAATACCTCCATGACATGGGCATCGTACACCGCGACCTGAAGCCGGAGAACCTTCTGTACGACAGTATGGAGGAGGACTCTAAGATCATGATCAGTGACTTTGGCCTGTCCAAGATCGAGGGATCTGGAAGTGTCATGTCCACAGCCTGCGGAACACCAGGATACGTGGCCCCTGAAGTGTTGGCCCAGAAACCCTACAGCAAGGCGGTGGACTGCTGGTCTATCGGGGTCATCGCCTACATCCTTTTGTGTGGATACCCTCCGTTCTATGATGAGAATGACGCCAAGCTCTTTGAGCAGATCCTGAAGGCTGACTATGAGTTTGACTCTCCGTACTGGGACGATATCTCTGACTCAGCCAAAGACTTCATAGTTCACTTGATGGAGAAGGACCCCAGGATACGCTACACATGTGACCAGGCTTTGCAGCACCCCTGGATCGCTGGTGACACAGCTCTAGATAAGAACATCCATGAGTCTGTCAGTGCCCAGATCAAGAAGAACTTTGCCAAGAGCAAGTGGAGGCAAGCGTTTAACGCCACGGCAGTGGTGCGTCACATGAGGCGTCTGCAGCTGGGCACCAGTCAGGAGGGCCCCAGCCAGACCACCCTGCCCAGCACCCTCCGAGACCACCTACTGCTGCCCGAGGCCACAGAGACAGAGCACACCACCGAGTCTCCTTGCGAGGGATGCTGCTCCCAGAGTGCTGATGGGGGGGCTGAGCGCGACCCCCTCTCCAACTGCACCTACCGCTGCCATCCAACCAGTCTGGTCTGATCCCCGCCCAGCAATGGCTTTCCCATGTATTTACCTCTGGACACCAGCGAACTCCCCAGGAGTACAGAGTTGTTCCAGTGCCCTGCCAACAGGGGGGGCAGGCGGGTTATGAATTCAGGTTGGGGAGGAGGGACTTGATGCCAACAAGAGGAGGTAATTTGAACGGATTGGGGGAGATGAGGAgaacaaagaggaggagaggtgtggtgCCCAGAGTAATCCTGGGTATTATTTTTTGAGGTGCGGGACAAACTGTTTACTCGTCCTTTTAAAATGTGTGTCTGCTTTTTACATTTCTGCATTTATGTACATGTTGTTTTCTATCTTAATTATCCTTCCCCTTTGACAACTTCTAGAAAGAGAATCCACTAATGATATCTGCATGGTCAGAAGACAGATCCCTATTGGAAACATGGGTATTATAGCATGAAAGGTCTATTGCACAATCATGTATGGTGGTAACCATTGTGTTATAGTTCCTGTACTGCAGATACACATCTTTATGACGATAATAAGTCTAGCCCCCCAGAATTATAATTGTATGGCTTTgttgtattttatatttgtatAAATGTAGCCTTACAATACACAGATGCATTCACCTAATACCACTGCTGGAGAATCCATGTGGGAATACTCCATCTATTGGACtatatattttcttttttttctcagcATGTTTGTGCTTCACCACTGTAAGTTTGTGGTTGTGCTCCCCAGGCTTGTAACAGAACAAGGCTTTCTGATTTGAACTAATTCAGCACAGGGACTTCCTCTCTATGCCTTTAGGACAACGTCAAAGGTTTCTTTTCTCGTAGCTTTTACAAATTTGAAGATACACCTATATCTCTGTACAGTTAATGCAGCATTAGAGGCAATTTTCATTTCTATCATTGTATTGTTGTATATATTTCATTGTGGTAATGGAATCAGTAAAATACAGACTTTTCTCTTCTGTCTAGATCTCTTTCCCACTTGAGAAGTGTAATACCTCAAGGGAGATAGACTTACATACACAGCCATTCCTCTTAGTACTAAGAATAGGCCTCCGTTAACCCACAGTTTTTACTCCTTGATGTTTCTTAAAAGCCACACTCTTCCCTATGGGGGGAATATGATCCCGTTGATAAAGCTGCTCAAGACTTAATCCATTATAGATATTACTGTAAGACCATGTAGAATGAAATGAGGTCCAGCCTTTCCTCAACCCAAAGCAGGGTGTGGATGTTTTTAACTAAAGACACATTTGTAAGTGTAGATACTTATCTGACCATGTAGATACTACTAACGTTCCCACTTTGACTACTCTTCCATGGATCTTACCTCCATTCATATGTTGGTTGTTTTCCGAGCCAATGTATCTGTACAGAGAGAATTTTAATTAAAGAATGTAAATATACA

Function

NR:

description
calcium/calmodulin-dependent protein kinase type 1-like isoform X1

GO: NA

KEGG:

id description
K08794 CAMK1; calcium/calmodulin-dependent protein kinase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569590.2 False 2746 mRNA 0.46 12 69371687 69429659
XM_036950541.1 True 2702 mRNA 0.46 12 69373842 69429659

Neighbor

gene id symbol gene type direction distance location
LOC110494481 spcs1 coding upstream 9169 69360279 ~ 69362518 (+)
LOC110494479 LOC106565861 coding upstream 17192 69348885 ~ 69354495 (+)
LOC118940682 NA coding upstream 17792 69353820 ~ 69353895 (+)
LOC118940683 NA coding upstream 20169 69351443 ~ 69351518 (+)
LOC110494476 LOC106565864 coding upstream 74705 69288804 ~ 69296982 (+)
LOC110494487 ptprg coding downstream 670712 70100371 ~ 70415005 (+)
c17h3orf14 cssa12h3orf14 coding downstream 991597 70421256 ~ 70429407 (+)
nampt2 LOC106565851 coding downstream 1208545 70638204 ~ 70656059 (+)
LOC110494491 synpr coding downstream 1241992 70671651 ~ 70712982 (+)
mx2 mx2 coding downstream 1297923 70727582 ~ 70738226 (+)
G1480890 NA non-coding upstream 1404 69369990 ~ 69370283 (+)
G1480889 nek4 non-coding upstream 2048 69369385 ~ 69369639 (+)
G1480892 NA non-coding upstream 2793 69368239 ~ 69368894 (+)
G1480885 LOC106565859 non-coding upstream 5042 69365572 ~ 69366645 (+)
G1480884 NA non-coding upstream 6155 69364130 ~ 69365532 (+)
G1480891 NA non-coding downstream 604 69430263 ~ 69431020 (+)
G1480888 NA non-coding downstream 2218 69431877 ~ 69434164 (+)
G1480927 NA non-coding downstream 7505 69437164 ~ 69437477 (+)
G1480928 NA non-coding downstream 7866 69437525 ~ 69437797 (+)
G1481101 NA non-coding downstream 17610 69447269 ~ 69447468 (+)
G1480254 pad other upstream 372504 68934326 ~ 68999183 (+)
G1479621 NA other upstream 1245907 68122538 ~ 68125780 (+)
G1478504 NA other upstream 1708038 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 2503807 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 2536747 66798767 ~ 66840370 (+)
LOC110494494 atxn7 other downstream 1409961 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 1748854 71178513 ~ 71180429 (+)
G1483638 NA other downstream 1952285 71381944 ~ 71382272 (+)
G1484782 NA other downstream 2875064 72304723 ~ 72305412 (+)

Expression


Co-expression Network