c17h3orf14 (cssa12h3orf14)


Basic Information

Item Value
gene id c17h3orf14
gene name cssa12h3orf14
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70421256 ~ 70429407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950547.1
CCAAAACTGGGTGGAGTACATGGGAGGTCTGACATTATTTTCTTGGCCTGTCTCATAACTGTTTGTTCAAAGACAGTCTGCGGTGACAGGTGCTACTAAACCTCAAACCCATCACCTTCATGGCTGTCTGGATCAGGTGATGGATTTGTGATTTTTAAGTCTAGGGAAGAGGGCTGTGCTCCTTCAGCAGATGGAAAGACGATATGAGCAACAGAAGAACAAGAGGAGGCAGCAGGTGAAGCTGTCACAAGCTGCACATGAGAGAAACTCCCAGCTCCTCCAGGACTTGCAGAAAATGGAGAATCGTCTCAGAACAAGAGTACTCCCACACCCTGACATCCTCAGTTTGGAGACTCGTTACTGGGCATCAGTTGAGGAGAAGATCCCAGAATGGGAGCGCTTCCTCCTGGGTAAGGGCCCACATCCTAGCAGTGACCCTAGCAGAACACCTAAAcaacaaaaactgaaaactacACCCAGAGACCATGCCCCCACACAAGATGGGGCTCTGCCTCCTCGTCCTATactgaaacatgtcaaatgaCCTGAAGTGGACAATCTGTTTTGGCTTTTGACTTAATCTTATGTGATCAACATGGAGTGAAGGAGAAACTAAAATCAGTTGACAGTTACACTGTAGATTGAGGTTATTGTGCGGTAAATGCTATTTTTTTTATAGGCCATATTTAGTCTCATATGGGCTGTTTTCCTATCAGAATAACAGTATTCTTAGCACCAACATTATTGAGTAGGCATCATGTTGATTTCCATTGTATTTACACTGCAGCTCCTTTTTGTGCTCAGCCATTTTGATATCTCAGGGTGAAGCTCAGATTTAGCCTATTACCCCTCAGTCTGCAGAATTGCTGCTCTTGATTGCAATGTTTACAAGCAATGCTCACACTTTCAGTGTGATGGTATTGCCTTTAACACGTTATGGTAATCCCATCCCATCAGAATTCTATTTGAAACAAAGAATATGGTGTCTTTGAATTCATGGCTCATATCTGCCCACTAGGGGGCGGTAGCACCATAGATTTGGATAACAAAGGCAAATTCCTTCAGTTAGACTCAGGTCATTCACTTCGTCTGTCACTCAGCAATGATTTAATCAAATGTGCTCTTATTTATTTGCCTGTATTGTCTGTATACTAGCTATGTTCTTATGTGTACATTAAAGCACTTTTTTTGTTCATATACTGTGCGATATCAAGCAATGTGCATATGTAACCAATAAAGTTTTTTATTATTCACCTTC
>XM_021569598.2
gtctagtaggtggcggtaatgcaacatattggatgccaaccaccGTTATACCTCATCGAAGAAGAAGGTCAGCAGTGTCTATCTCTTTCTAGTTAAGTTAGCAGAATGACATCTCCTCCATTTGAAGAAGTTGAACTGAACAAGAAACACGAAGAAATTCTAGGGAAGAGGGCTGTGCTCCTTCAGCAGATGGAAAGACGATATGAGCAACAGAAGAACAAGAGGAGGCAGCAGGTGAAGCTGTCACAAGCTGCACATGAGAGAAACTCCCAGCTCCTCCAGGACTTGCAGAAAATGGAGAATCGTCTCAGAACAAGAGTACTCCCACACCCTGACATCCTCAGTTTGGAGACTCGTTACTGGGCATCAGTTGAGGAGAAGATCCCAGAATGGGAGCGCTTCCTCCTGGGTAAGGGCCCACATCCTAGCAGTGACCCTAGCAGAACACCTAAAcaacaaaaactgaaaactacACCCAGAGACCATGCCCCCACACAAGATGGGGCTCTGCCTCCTCGTCCTATactgaaacatgtcaaatgaCCTGAAGTGGACAATCTGTTTTGGCTTTTGACTTAATCTTATGTGATCAACATGGAGTGAAGGAGAAACTAAAATCAGTTGACAGTTACACTGTAGATTGAGGTTATTGTGCGGTAAATGCTATTTTTTTTATAGGCCATATTTAGTCTCATATGGGCTGTTTTCCTATCAGAATAACAGTATTCTTAGCACCAACATTATTGAGTAGGCATCATGTTGATTTCCATTGTATTTACACTGCAGCTCCTTTTTGTGCTCAGCCATTTTGATATCTCAGGGTGAAGCTCAGATTTAGCCTATTACCCCTCAGTCTGCAGAATTGCTGCTCTTGATTGCAATGTTTACAAGCAATGCTCACACTTTCAGTGTGATGGTATTGCCTTTAACACGTTATGGTAATCCCATCCCATCAGAATTCTATTTGAAACAAAGAATATGGTGTCTTTGAATTCATGGCTCATATCTGCCCACTAGGGGGCGGTAGCACCATAGATTTGGATAACAAAGGCAAATTCCTTCAGTTAGACTCAGGTCATTCACTTCGTCTGTCACTCAGCAATGATTTAATCAAATGTGCTCTTATTTATTTGCCTGTATTGTCTGTATACTAGCTATGTTCTTATGTGTACATTAAAGCACTTTTTTTGTTCATATACTGTGCGATATCAAGCAATGTGCATATGTAACCAATAAAGTTTTTTATTATTCACCTTC
>XM_021569600.2
AGAAACACGAAGAAATGTGAGCTATTGTCTAGTTAAACAATTTTAGGGAAATTTGACCATTAGTAACGTGTCGTCAAGGGTAGCAAACGCTAGTGCTTGTTGTCTAACGTTAGCTCAGTCAGAACCATGTGACGTTAACCGGGAATGGAACCACTATGATTTAGAACGCCAGCTAACTAAAAAAATGGCTGAATTTCCAGAGTAACTCTGAGTCTATTATAGAGAATTAAATAATGTTAGTTAGGGAGCCAATAAAAACCTACTGAAACCGTTATTGTGGGCCGATCGTTGCCCCAGATCAGAGTTCGTTCTCGTGGCAGTAACAATACAGACAAAACACCTCAGCTAAGGAGTTGGCGTAGCCGAACACAAACTGGTTCTAGGGAAGAGGGCTGTGCTCCTTCAGCAGATGGAAAGACGATATGAGCAACAGAAGAACAAGAGGAGGCAGCAGGTGAAGCTGTCACAAGCTGCACATGAGAGAAACTCCCAGCTCCTCCAGGACTTGCAGAAAATGGAGAATCGTCTCAGAACAAGAGTACTCCCACACCCTGACATCCTCAGTTTGGAGACTCGTTACTGGGCATCAGTTGAGGAGAAGATCCCAGAATGGGAGCGCTTCCTCCTGGGTAAGGGCCCACATCCTAGCAGTGACCCTAGCAGAACACCTAAAcaacaaaaactgaaaactacACCCAGAGACCATGCCCCCACACAAGATGGGGCTCTGCCTCCTCGTCCTATactgaaacatgtcaaatgaCCTGAAGTGGACAATCTGTTTTGGCTTTTGACTTAATCTTATGTGATCAACATGGAGTGAAGGAGAAACTAAAATCAGTTGACAGTTACACTGTAGATTGAGGTTATTGTGCGGTAAATGCTATTTTTTTTATAGGCCATATTTAGTCTCATATGGGCTGTTTTCCTATCAGAATAACAGTATTCTTAGCACCAACATTATTGAGTAGGCATCATGTTGATTTCCATTGTATTTACACTGCAGCTCCTTTTTGTGCTCAGCCATTTTGATATCTCAGGGTGAAGCTCAGATTTAGCCTATTACCCCTCAGTCTGCAGAATTGCTGCTCTTGATTGCAATGTTTACAAGCAATGCTCACACTTTCAGTGTGATGGTATTGCCTTTAACACGTTATGGTAATCCCATCCCATCAGAATTCTATTTGAAACAAAGAATATGGTGTCTTTGAATTCATGGCTCATATCTGCCCACTAGGGGGCGGTAGCACCATAGATTTGGATAACAAAGGCAAATTCCTTCAGTTAGACTCAGGTCATTCACTTCGTCTGTCACTCAGCAATGATTTAATCAAATGTGCTCTTATTTATTTGCCTGTATTGTCTGTATACTAGCTATGTTCTTATGTGTACATTAAAGCACTTTTTTTGTTCATATACTGTGCGATATCAAGCAATGTGCATATGTAACCAATAAAGTTTTTTATTATTCACCTTC
>XM_021569599.2
TCTCCACTGCAGCACATGAATACTGGCAGCCAGGGTCTAGGGAAGAGGGCTGTGCTCCTTCAGCAGATGGAAAGACGATATGAGCAACAGAAGAACAAGAGGAGGCAGCAGGTGAAGCTGTCACAAGCTGCACATGAGAGAAACTCCCAGCTCCTCCAGGACTTGCAGAAAATGGAGAATCGTCTCAGAACAAGAGTACTCCCACACCCTGACATCCTCAGTTTGGAGACTCGTTACTGGGCATCAGTTGAGGAGAAGATCCCAGAATGGGAGCGCTTCCTCCTGGGTAAGGGCCCACATCCTAGCAGTGACCCTAGCAGAACACCTAAAcaacaaaaactgaaaactacACCCAGAGACCATGCCCCCACACAAGATGGGGCTCTGCCTCCTCGTCCTATactgaaacatgtcaaatgaCCTGAAGTGGACAATCTGTTTTGGCTTTTGACTTAATCTTATGTGATCAACATGGAGTGAAGGAGAAACTAAAATCAGTTGACAGTTACACTGTAGATTGAGGTTATTGTGCGGTAAATGCTATTTTTTTTATAGGCCATATTTAGTCTCATATGGGCTGTTTTCCTATCAGAATAACAGTATTCTTAGCACCAACATTATTGAGTAGGCATCATGTTGATTTCCATTGTATTTACACTGCAGCTCCTTTTTGTGCTCAGCCATTTTGATATCTCAGGGTGAAGCTCAGATTTAGCCTATTACCCCTCAGTCTGCAGAATTGCTGCTCTTGATTGCAATGTTTACAAGCAATGCTCACACTTTCAGTGTGATGGTATTGCCTTTAACACGTTATGGTAATCCCATCCCATCAGAATTCTATTTGAAACAAAGAATATGGTGTCTTTGAATTCATGGCTCATATCTGCCCACTAGGGGGCGGTAGCACCATAGATTTGGATAACAAAGGCAAATTCCTTCAGTTAGACTCAGGTCATTCACTTCGTCTGTCACTCAGCAATGATTTAATCAAATGTGCTCTTATTTATTTGCCTGTATTGTCTGTATACTAGCTATGTTCTTATGTGTACATTAAAGCACTTTTTTTGTTCATATACTGTGCGATATCAAGCAATGTGCATATGTAACCAATAAAGTTTTTTATTATTCACCTTC

Function

NR:

description
uncharacterized protein C3orf14 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950547.1 False 1258 mRNA 0.42 4 70421256 70429407
XM_021569598.2 False 1257 mRNA 0.42 4 70423680 70429407
XM_021569600.2 False 1477 mRNA 0.42 4 70423822 70429407
XM_021569599.2 True 1134 mRNA 0.42 4 70425774 70429407

Neighbor

gene id symbol gene type direction distance location
LOC110494487 ptprg coding upstream 6264 70100371 ~ 70415005 (+)
LOC110494482 LOC106565858 coding upstream 991597 69371687 ~ 69429659 (+)
LOC110494481 spcs1 coding upstream 1058738 69360279 ~ 69362518 (+)
LOC110494479 LOC106565861 coding upstream 1066761 69348885 ~ 69354495 (+)
nampt2 LOC106565851 coding downstream 208797 70638204 ~ 70656059 (+)
LOC110494491 synpr coding downstream 242244 70671651 ~ 70712982 (+)
mx2 mx2 coding downstream 298175 70727582 ~ 70738226 (+)
LOC110494492 mx2 coding downstream 318430 70747837 ~ 70759905 (+)
LOC110494493 mx1 coding downstream 348045 70777452 ~ 70783111 (+)
G1482021 NA non-coding upstream 5572 70415406 ~ 70415684 (+)
G1481989 NA non-coding upstream 52495 70337090 ~ 70368761 (+)
G1481946 NA non-coding upstream 141130 70277253 ~ 70280126 (+)
G1481734 NA non-coding upstream 427142 69991857 ~ 69994114 (+)
G1482033 fezf2 non-coding downstream 9909 70439316 ~ 70440807 (+)
G1482038 NA non-coding downstream 20719 70450126 ~ 70450343 (+)
G1482043 NA non-coding downstream 29668 70459075 ~ 70459309 (+)
G1482046 NA non-coding downstream 33329 70462736 ~ 70525606 (+)
G1482059 NA non-coding downstream 54525 70483932 ~ 70484312 (+)
G1480254 pad other upstream 1422073 68934326 ~ 68999183 (+)
G1479621 NA other upstream 2295476 68122538 ~ 68125780 (+)
G1478504 NA other upstream 2757607 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 3553376 66867211 ~ 66867881 (+)
iffo2b LOC106565910 other upstream 3586316 66798767 ~ 66840370 (+)
LOC110494494 atxn7 other downstream 410213 70809971 ~ 70847390 (+)
G1483346 LOC106565841 other downstream 749106 71178513 ~ 71180429 (+)
G1483638 NA other downstream 952537 71381944 ~ 71382272 (+)
G1484782 NA other downstream 1875316 72304723 ~ 72305412 (+)

Expression


Co-expression Network