LOC110494491 (synpr)


Basic Information

Item Value
gene id LOC110494491
gene name synpr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70671651 ~ 70712982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569605.2
GGTGCCTCGATCCAACATTAATGCACGAGAGATACAATCACATCCCCTCAACCATCTCCGACGTGGGGAGGAGAGGCAGTTACAATCGGCAAATGTGGACGCCATCGTTTATTTCCGTGAAGCCAATCCCAGTCTGTCTCTATGGTGTTTTATTTTTCAACAAGCCGAATAGAGCTCGGTTTTTTCCGTGCAGTAGCAATTAAAGCCGAGAGTCTTTTGCGCGAGGCACAGACATCAGTCGGTTTGGGTAGCACTGTAAAATTGTGTACGTCTTACTGAACAAGTAGATAAGTATTTTGAAAATGGAATCAGCTAACCAGCTCGTGTCTGTTGGAACGTTTCAAGTGCTTAAATTACCCCTTGGATTTATCCGCGTTTTGGAATGGCTTTTTGCCATTTTTGCATTTGCAACATGTGGAGGCTACAGTGGACAGCTGCGGGTTAGCGTTGACTGTCAGCTTGACAAGGCCAGCAGCAACCTCAGTATTGGCATCGATTTTGCCTATCCTTTTAGGTTGCACCAGGTGTCCTTTGAGGCTCCGCTGTgtgatgggaggaggagggagagtctCTTCCTCATTGGGGACTATTCTTCCTCAGCTGAGTTCTTTGTCACCATTGCTGTGTTCGCCTTCCTCTACTCCCTCATGGCCACCATAGTCTACATCTTCTTCCAGAACAAGTACAGAGAGAACAACCGAGGCCCTCTCATCGACTTCATAGTGACCGTGGTGTTCGCCTTCATGTGGCTGGTCAGTTCTTCGGCCTGGGCCCAGGCCTTGTCGGACGTCAAGGTCGCCACAGATCCAGATGAGGTGCAGGAGCTCATTTCTGCCTGTAAGGTCATGACCAACAAGTGTGGCTCAGTGCAAGGACCCCGTTGGTCAGGCCTTAACACCTCTGTGGTGTTTGGCTTCCTAAACTTCGTTCTGTGGGCAGGAAACATCTGGTTTGTTTTCAAGGAGACTGGCTGGCATAAGGGAGGACCTGCTCGGTACGCTGGAGCGCCACCCGAAAAACAGGCCGCGACCTTCAGCCAGCAGCAGCCCTACAACCAGGGCAGCTTCGACCAGTCAGGAGGCTACAGCGGCCAGGGAGACCGGGAGCAGGCATCAGAatacagtcctgtgggcgaaccCACCTCCTACTCCAATCAGATGTAGCCTTGCAGTCTGATTGGCACATCAGTGTTCTATAAGGGAAAATTCAATCAGGGGTTAAGGAAGGAAGGggttgaagggagggagggggcatgAGGGGCTAGCTCAGTTTGATCCCTCTGATGCATCACGTTGTTGGTGTCCTGTTTGtgcaaaaacataaaaaaaatgtgtccaaATGACCAACATGCAGTTCTTAGGTAAAAATATTCTGGTGCCAGAAAAGGTAAGTTGTCGATTGATACAGTTCCACGCGTTGTATTTTGAAGTATTGTACAAAATCTAGATTTTAGTTACGTTTTTAGATGTTGTTTTCGTGAATGTTGTATTGCCTGTGGCTTGAGTCTGTTTACAGTTTATCTTTTTCTGTGCTAGGTGCAATGCCACAGACCTTTTTAACGAGACTTCTTTTTCAAACTGGTTTGTACTGTCGTGGAAGAGAAATGTGGTCTACAATTGTATAATTCTTGAAGTTTCCTATATAGTCTTGACAAAGTGCATGAAGTTGTGCTATGTGTTTCTATGCTTGTTTGTGCACATTCTAATAATGAAACTGGCAGGATTTAATCTCAGCGTTACAGCAAGGTAACAGTAGCAGTTTATTCCTCATTATTAGAATTTTATTTCATCgcttgtatttatttatatttttttcaagACACCCTTTATAGTATACACTATATTTtaataaatgtgtttttattttatatatttaaaatGATTATTTAAATTGTATCAAGTTTTATTTCACTGCACTAAGGAAGAATTGTTCGTTTTTTGCCATGTTACACAAGATGCCCTTGATCATAAATGGgttttatgtattgatttgtggGGAGTTTTTGATGTTGTTGTTAACAATTGTAAATGGGAAAAGTGTTTGTACCCGCTCTGTTTACAAATGGTTGCTCTTGATTCAAATGAAAGAATAATTTCATACACATCCTGGAGCTGGCTAGCTAGGCCCCAGTGAAAAAGGGCCAGAATAACTAAGTTGCAATTAAAACAGTGAGCTCAGCCAAGCTTGTCTGTATAACCATTCCTGAACACCCTCCATTTTATCTGTCATGTTTTCTCTGTCTTGAATTTTATAAACAAAGTCATTCAGGTTTGTACAACTTTTGGAAAGTTTGTGCAATGAATAAAAATAAGTCTAATGAGATGGTGTCTGATATTGATGATGATAATGAATTAACCACGTGTCTTCAGTGTCAAAGCATGTGGTAAAAAAACTCCATGTATGTACTTGCTCTTCTGTCCGTGTAACATTATAATTTGAACAATTTGAAAACCATTTACCAGTATTTGTAATCTGTTTATGATTACTGAGGGTGGGGGATATTTTACAAGCATTTTGAATAATGCTAATAAAGATGTTGGACAAATCCA

Function

symbol description
synpr Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

NR:

description
synaptoporin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569605.2 True 2549 mRNA 0.42 6 70671651 70712982

Neighbor

gene id symbol gene type direction distance location
nampt2 LOC106565851 coding upstream 15592 70638204 ~ 70656059 (+)
c17h3orf14 cssa12h3orf14 coding upstream 242244 70421256 ~ 70429407 (+)
LOC110494487 ptprg coding upstream 256659 70100371 ~ 70415005 (+)
LOC110494482 LOC106565858 coding upstream 1241992 69371687 ~ 69429659 (+)
LOC110494481 spcs1 coding upstream 1309133 69360279 ~ 69362518 (+)
mx2 mx2 coding downstream 14600 70727582 ~ 70738226 (+)
LOC110494492 mx2 coding downstream 34855 70747837 ~ 70759905 (+)
LOC110494493 mx1 coding downstream 64470 70777452 ~ 70783111 (+)
mx mx coding downstream 80633 70793615 ~ 70801618 (+)
LOC110494494 atxn7 coding downstream 96989 70809971 ~ 70847390 (+)
G1482737 NA non-coding upstream 44451 70626841 ~ 70627200 (+)
G1482728 NA non-coding upstream 48431 70622888 ~ 70623220 (+)
G1482725 NA non-coding upstream 51772 70619672 ~ 70619879 (+)
G1482106 NA non-coding upstream 121136 70549969 ~ 70550515 (+)
G1482059 NA non-coding upstream 187339 70483932 ~ 70484312 (+)
slc2a9l1 LOC106565846 non-coding downstream 138946 70851928 ~ 70944023 (+)
G1482873 NA non-coding downstream 227449 70940431 ~ 70940734 (+)
G1482959 NA non-coding downstream 362384 71075366 ~ 71075569 (+)
G1482961 NA non-coding downstream 364425 71077407 ~ 71077707 (+)
G1482962 NA non-coding downstream 366307 71079289 ~ 71079520 (+)
G1480254 pad other upstream 1672468 68934326 ~ 68999183 (+)
G1479621 NA other upstream 2545871 68122538 ~ 68125780 (+)
G1478504 NA other upstream 3008002 67661987 ~ 67663649 (+)
LOC110494429 LOC106565956 other upstream 3803771 66867211 ~ 66867881 (+)
G1483346 LOC106565841 other downstream 465531 71178513 ~ 71180429 (+)
G1483638 NA other downstream 668962 71381944 ~ 71382272 (+)
G1484782 NA other downstream 1591741 72304723 ~ 72305412 (+)
G1484897 NA other downstream 1741581 72454563 ~ 72454924 (+)

Expression


Co-expression Network