slc2a9l1 (LOC106565846)


Basic Information

Item Value
gene id slc2a9l1
gene name LOC106565846
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70851928 ~ 70944023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036950562.1
aatgacTACGGATAACACTGGTCTGCTACTTCCGCTACAGCGAGAACGTCAGGCAAGATCAGATGGTGCTGCCCTCGTCTGGCTAATAAGGGAATGTCCGCCGAGCACACGAAACCCGTGGTAATGCTCTAGTCTTCATAATCATTTTGGGTATTGGCGGATCTTTTCAAAATGGTTTCCATGTTACTGTCATCAGTTCCCCTTCACCATACATCTGGAGCTTCATCAATAGCAGTTGGATTGGGCGATATGAAGAAACCCCACCGGCACAGACAGTCAAACTCCTCTGGTCAGCTATAGTGTCTCTGTACGCTGTGGGGGGTCTCCTGGGCTCGATGAGTGTCAGGTGCATTGCTGGGAGGTTTGGCAGGAAGAGAGCCATGATATGGAACAATGTTGTCAACATTGTTGCTGCAGTGATCATGTTCACCAGTAGGGGGGCAAACTCCTTTGAGATGATCCTGATTGCTCGGTTTCTGTTTGGATTCACTGCAGGTTTAGGAGTGAATATCCATGCAATATACCTGGGTGAAAGTTCACCCAAAAAGATAAGGGGCATGGTAACACTAACATCTGCTACCTTCCTCTCCATTGGTAAACTGTCAGGACAATTTTTTGGACTAAGGGAGATTCTTGGTCGTGAGGATAGCTGGAACATCCTACTGTGTGTTTCAACATGTTTCTCAGTGGTACAGCTGCTAACACTTCCCTTCTTCCCTGAGGCCCCAAGATACTTATTGATAGAAAAGGGCAATGCAGAGGCATGCAAAAAAGctcTGCAGAGTCTGTGGGGCAGGGGTGAGTACAAGCTGGAGATGACGGAGATGGTGTTGGAGCAGGCTGCCATAAAAGGCGAGACCTCGAAGACTCTCCTGGAGCTGCTGAGAGACAGGAGCGTACGATGGCAGCTCATCACCATGGTGGTGGTGTACGGCTGCATCCAGTTCTCTGGCATCACTGCAATCAGTGTGTTCTCCTTTGACATCTTCAAGGAGGCAGGCATCCCCCTGGATAAGATCCGCTATGTGACTCTGGGTATTGGAGTGTCTGAGGTCCTCACCTCCATCACCTGTGGCCTGTTGATCGAGAGTGTGGGGAGGAGAGCGCTACTCTGGGGGGGCTTTGGGGCCATGTCTGCCATCATGATATTAATCACCATCACTCTCAATCTAAAGGATTACAGCTTCTGGATTCCATACAGCACCGTTGGCTTGATATTCCTCTTTGTCATTTTTTATGGAGGAGGACCAGCTGGAGTGTTGCCGTCTCTCACACATGAGATCTTCATCCAATCGTGCCGGCCTGCAGCGTTTGTGTTTACTGGGATCCTGCGCTGGCTTGGCTTTTCTGTGCTGGGACTAGTTTTCCCTTTTCTTATCGGGCTGCTAAAATCAGTCTGCTTCGTGCTGTTTGCCTGCATGTGTCTGTTGGCGTCATTTTACATCTTCTTCTACCTGCCGGAGACCAAGGGGAAAACCCTCCTGGAGATCTCAGAGGAGTTTAAAAACATCACACTGTGTGAAAACCCCCTCTCAGTTGACAAGAGTCTGGAGACAAAGTTATGAAAACTGTTGATAGCAAATTAACTGAGATTTATCCCACTCTGAGTTGTTTAGTTTGTATCATATCTTCATACAATGTGCACTCACAGCAtatattaaatcaaatgtatttatatagcccttcttagatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtatatATACAATTGTTTTATGCATCTGAATGACTTTTAGAGACCTATTGATTTATAATAAAATTACTTTTCAAACAATCTTTAA
>XM_036950561.1
ATAACACTGGTCTGCTACTTCCGCTACAGCGAGAACGTCAGGCAAGATCAGATGGTGCTGCCCTCGTCTGGCTAATAAGGGAATGTCCGCCGAGCACACGAAAGACGAGTAGGACTAATGTGACAGCGACGCAGTGGTTGAAAGTTAAGCTCCCTCTGAGATACCCGTGGTAATGCTCTAGTCTTCATAATCATTTTGGGTATTGGCGGATCTTTTCAAAATGGTTTCCATGTTACTGTCATCAGTTCCCCTTCACCATACATCTGGAGCTTCATCAATAGCAGTTGGATTGGGCGATATGAAGAAACCCCACCGGCACAGACAGTCAAACTCCTCTGGTCAGCTATAGTGTCTCTGTACGCTGTGGGGGGTCTCCTGGGCTCGATGAGTGTCAGGTGCATTGCTGGGAGGTTTGGCAGGAAGAGAGCCATGATATGGAACAATGTTGTCAACATTGTTGCTGCAGTGATCATGTTCACCAGTAGGGGGGCAAACTCCTTTGAGATGATCCTGATTGCTCGGTTTCTGTTTGGATTCACTGCAGGTTTAGGAGTGAATATCCATGCAATATACCTGGGTGAAAGTTCACCCAAAAAGATAAGGGGCATGGTAACACTAACATCTGCTACCTTCCTCTCCATTGGTAAACTGTCAGGACAATTTTTTGGACTAAGGGAGATTCTTGGTCGTGAGGATAGCTGGAACATCCTACTGTGTGTTTCAACATGTTTCTCAGTGGTACAGCTGCTAACACTTCCCTTCTTCCCTGAGGCCCCAAGATACTTATTGATAGAAAAGGGCAATGCAGAGGCATGCAAAAAAGctcTGCAGAGTCTGTGGGGCAGGGGTGAGTACAAGCTGGAGATGACGGAGATGGTGTTGGAGCAGGCTGCCATAAAAGGCGAGACCTCGAAGACTCTCCTGGAGCTGCTGAGAGACAGGAGCGTACGATGGCAGCTCATCACCATGGTGGTGGTGTACGGCTGCATCCAGTTCTCTGGCATCACTGCAATCAGTGTGTTCTCCTTTGACATCTTCAAGGAGGCAGGCATCCCCCTGGATAAGATCCGCTATGTGACTCTGGGTATTGGAGTGTCTGAGGTCCTCACCTCCATCACCTGTGGCCTGTTGATCGAGAGTGTGGGGAGGAGAGCGCTACTCTGGGGGGGCTTTGGGGCCATGTCTGCCATCATGATATTAATCACCATCACTCTCAATCTAAAGGATTACAGCTTCTGGATTCCATACAGCACCGTTGGCTTGATATTCCTCTTTGTCATTTTTTATGGAGGAGGACCAGCTGGAGTGTTGCCGTCTCTCACACATGAGATCTTCATCCAATCGTGCCGGCCTGCAGCGTTTGTGTTTACTGGGATCCTGCGCTGGCTTGGCTTTTCTGTGCTGGGACTAGTTTTCCCTTTTCTTATCGGGCTGCTAAAATCAGTCTGCTTCGTGCTGTTTGCCTGCATGTGTCTGTTGGCGTCATTTTACATCTTCTTCTACCTGCCGGAGACCAAGGGGAAAACCCTCCTGGAGATCTCAGAGGAGTTTAAAAACATCACACTGTGTGAAAACCCCCTCTCAGTTGACAAGAGTCTGGAGACAAAGTTATGAAAACTGTTGATAGCAAATTAACTGAGATTTATCCCACTCTGAGTTGTTTAGTTTGTATCATATCTTCATACAATGTGCACTCACAGCAtatattaaatcaaatgtatttatatagcccttcttagatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtatatATACAATTGTTTTATGCATCTGAATGACTTTTAGAGACCTATTGATTTATAATAAAATTACTTTTCAAACAATCTTTAA
>XM_021569612.2
GAGATGTAAAATATTAATCTTATTCCTGAAAATGTCTAACAGAGCAACTGTCAGGTGGACATGTAACGTTAGACATAATTGTGTCACATGGAACTCTCAAGATATACAGAATGGAGACTTTGTTGAGGCACCTGACCCGTGGTAATGCTCTAGTCTTCATAATCATTTTGGGTATTGGCGGATCTTTTCAAAATGGTTTCCATGTTACTGTCATCAGTTCCCCTTCACCATACATCTGGAGCTTCATCAATAGCAGTTGGATTGGGCGATATGAAGAAACCCCACCGGCACAGACAGTCAAACTCCTCTGGTCAGCTATAGTGTCTCTGTACGCTGTGGGGGGTCTCCTGGGCTCGATGAGTGTCAGGTGCATTGCTGGGAGGTTTGGCAGGAAGAGAGCCATGATATGGAACAATGTTGTCAACATTGTTGCTGCAGTGATCATGTTCACCAGTAGGGGGGCAAACTCCTTTGAGATGATCCTGATTGCTCGGTTTCTGTTTGGATTCACTGCAGGTTTAGGAGTGAATATCCATGCAATATACCTGGGTGAAAGTTCACCCAAAAAGATAAGGGGCATGGTAACACTAACATCTGCTACCTTCCTCTCCATTGGTAAACTGTCAGGACAATTTTTTGGACTAAGGGAGATTCTTGGTCGTGAGGATAGCTGGAACATCCTACTGTGTGTTTCAACATGTTTCTCAGTGGTACAGCTGCTAACACTTCCCTTCTTCCCTGAGGCCCCAAGATACTTATTGATAGAAAAGGGCAATGCAGAGGCATGCAAAAAAGctcTGCAGAGTCTGTGGGGCAGGGGTGAGTACAAGCTGGAGATGACGGAGATGGTGTTGGAGCAGGCTGCCATAAAAGGCGAGACCTCGAAGACTCTCCTGGAGCTGCTGAGAGACAGGAGCGTACGATGGCAGCTCATCACCATGGTGGTGGTGTACGGCTGCATCCAGTTCTCTGGCATCACTGCAATCAGTGTGTTCTCCTTTGACATCTTCAAGGAGGCAGGCATCCCCCTGGATAAGATCCGCTATGTGACTCTGGGTATTGGAGTGTCTGAGGTCCTCACCTCCATCACCTGTGGCCTGTTGATCGAGAGTGTGGGGAGGAGAGCGCTACTCTGGGGGGGCTTTGGGGCCATGTCTGCCATCATGATATTAATCACCATCACTCTCAATCTAAAGGATTACAGCTTCTGGATTCCATACAGCACCGTTGGCTTGATATTCCTCTTTGTCATTTTTTATGGAGGAGGACCAGCTGGAGTGTTGCCGTCTCTCACACATGAGATCTTCATCCAATCGTGCCGGCCTGCAGCGTTTGTGTTTACTGGGATCCTGCGCTGGCTTGGCTTTTCTGTGCTGGGACTAGTTTTCCCTTTTCTTATCGGGCTGCTAAAATCAGTCTGCTTCGTGCTGTTTGCCTGCATGTGTCTGTTGGCGTCATTTTACATCTTCTTCTACCTGCCGGAGACCAAGGGGAAAACCCTCCTGGAGATCTCAGAGGAGTTTAAAAACATCACACTGTGTGAAAACCCCCTCTCAGTTGACAAGAGTCTGGAGACAAAGTTATGAAAACTGTTGATAGCAAATTAACTGAGATTTATCCCACTCTGAGTTGTTTAGTTTGTATCATATCTTCATACAATGTGCACTCACAGCAtatattaaatcaaatgtatttatatagcccttcttagatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtatatATACAATTGTTTTATGCATCTGAATGACTTTTAGAGACCTATTGATTTATAATAAAATTACTTTTCAAACAATCTTTAA
>TU1695598
TCTGAGGTCGGGCCTCTTCTGGGCAATCATGCAGACGTAgacggtgtatgtgacaaaagtCTTGTAGTCCATGAGCTCGTAGGAGGTGAAGGTGGACACCGTGTCCAGGAAGAGCTCAGCAGCCTGTTTAAAGTCACGGATGGCCACACAGTACAGGCCCTGGTACACCTTCAGACGGTTCCTCCTGTCCCAGTCACCCCCCTCCTCAATAAGGCTTTTGGCTTTCTCAGTGTTGCGCGTGATGAGGTCACTGTCCATGTAGAACAGTCCAATCCTTAGCAGGTAGAACACAATGTCTAGCCGATGTCCCAGGGCCACAGTCTTATCAAAGGTCTTCCTGAAGGCAGTCAACGCTTCCTCCTTTTCATGCAA
>TU1695601
ATTCCCAATTCTGATGAGATATTCAGCTCTAGCCATCATTGCATCTCGAATTTCACTCTCCCCGAGGTTCTTCTCAGCATCTTCTAGGACATCATCCAGACGTTTCAGCTCGTCCTCGTTGGCCTTCTTCATCTTACTCATTAGGTCTGTGTCAAGCTGCCACTTCAGGTCTTTACACAGGCTCTCGTAGTAAGGTGCCATATCGTTTTCTTTGATTGAGTCCATGAGCTCGGTTTTCACTTTAGCATCTTGTCGGTGACCATCCATCGTGAGCAAAAATTTCAGCTGTGCTATCCTAAGATCAGGGTTTTTAGGCAGACCCTCTTCTTCCAGATTTTCCAACGGCATTTTGGCAAATATAAAATTAGTAATGACTTGGCTAAATAGCAGATATATCTTCTCTGGGACAACAAGGGTAAGGGGGAGATATAttcggctagctagctaacaatgacTAC

Function

NR:

description
26S proteasome non-ATPase regulatory subunit 6-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036950562.1 False 1841 mRNA 0.46 12 70855148 70862127
XM_036950561.1 False 1890 mRNA 0.47 13 70855159 70862127
XM_021569612.2 False 1862 mRNA 0.45 12 70855410 70862127
TU1695598 False 372 lncRNA 0.52 3 70851928 70944023
TU1695601 True 458 lncRNA 0.43 2 70852809 70855156

Neighbor

gene id symbol gene type direction distance location
LOC110494494 atxn7 coding upstream 7758 70809971 ~ 70847390 (+)
mx mx coding upstream 53530 70793615 ~ 70801618 (+)
LOC110494493 mx1 coding upstream 72037 70777452 ~ 70783111 (+)
LOC110494492 mx2 coding upstream 95243 70747837 ~ 70759905 (+)
mx2 mx2 coding upstream 116922 70727582 ~ 70738226 (+)
LOC110494500 NA coding downstream 309886 71172013 ~ 71173244 (+)
slc25a26 slc25a26 coding downstream 587533 71449660 ~ 71518366 (+)
kbtbd8 LOC106565838 coding downstream 808528 71670655 ~ 71678016 (+)
LOC110493246 LOC106565837 coding downstream 816262 71678389 ~ 71688655 (+)
LOC118940657 NA coding downstream 840518 71702645 ~ 71702701 (+)
G1482737 NA non-coding upstream 227948 70626841 ~ 70627200 (+)
G1482728 NA non-coding upstream 231928 70622888 ~ 70623220 (+)
G1482725 NA non-coding upstream 235269 70619672 ~ 70619879 (+)
G1482106 NA non-coding upstream 304633 70549969 ~ 70550515 (+)
G1482059 NA non-coding upstream 370836 70483932 ~ 70484312 (+)
G1482873 NA non-coding downstream 78304 70940431 ~ 70940734 (+)
G1482959 NA non-coding downstream 213239 71075366 ~ 71075569 (+)
G1482961 NA non-coding downstream 215280 71077407 ~ 71077707 (+)
G1482962 NA non-coding downstream 217162 71079289 ~ 71079520 (+)
G1483721 NA non-coding downstream 585780 71447907 ~ 71448238 (+)
nampt2 LOC106565851 other upstream 199091 70638204 ~ 70656059 (+)
G1480254 pad other upstream 1855965 68934326 ~ 68999183 (+)
G1479621 NA other upstream 2729368 68122538 ~ 68125780 (+)
G1478504 NA other upstream 3191499 67661987 ~ 67663649 (+)
G1483346 LOC106565841 other downstream 316386 71178513 ~ 71180429 (+)
G1483638 NA other downstream 519817 71381944 ~ 71382272 (+)
G1484782 NA other downstream 1442596 72304723 ~ 72305412 (+)
G1484897 NA other downstream 1592436 72454563 ~ 72454924 (+)
LOC110494525 LOC106565811 other downstream 2182610 73044346 ~ 73049958 (+)
G1482046 NA non-coding upstream 326322 70462736 ~ 70525606 (+)
G1483735 NA non-coding downstream 534445 71478468 ~ 71478743 (+)

Expression


Co-expression Network