LOC110493246 (LOC106565837)


Basic Information

Item Value
gene id LOC110493246
gene name LOC106565837
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71678389 ~ 71688655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567510.2
AATTCCTGGACTTTTGGGAGCAGAAGACAGTCACCGTTATAATTCAATGAACCAATAGGTACAAATGAGGTACACATGTCTAAAGTCGACTGAAAAATCAAATCGATGTTTCAGAAACGTTGTGCGTGAACTGGGAGTTTAAGTTCTGCGCTGTTCGTCACCAAGAAACATGTCCCCTGCACCAGCATCTATTCTGCGGGACACCCCTCCGGacgggggctggggctgggccgtGGTGTTTGGGGCCTTCATCTCTATCGGCTTCTCGTATGCCTTCCCCAAAGCCCTCACTGTCTTCTTCAAAGACATCCAGCTGATCTTCGGTGCCTCCTACAGCCAGATTGCATGGATTTCTTCCATCATGCTGGCAGCAATGTATGCCGGTGGACCTATCAGCAGTATTCTGGTCAATCGCTATGGAAGCCGGCCTGTGGTCATAGCTGGTGGAGTGATGTGTGGCATTGGTATGGTGACTGCTTCTTTTGGCAATACCATTACGCATTTGTACATATGCGTAGGAGTCGTTGGAGGATTTGGTCTTTCTTTTAACCTCCAGCCATCCGTCACCATCATTGGGAAGTACTTCCAGGTCAAGAGGCCGTTAGCTAATGGGCTGGCCATGGCAGGAAGtccagtcttcctctgtaccttaGCACCTATCAACCAGTTCCTGTTTAACCAATTTGGCTGGAGGGGCAGTTTCTTCATCCTGGGAGCTCTGCTGCTCAACTGCTGTGTTGCCGGCTCTCTCATGAGGCCCATTTGTCCAAAGCCAACTGGAGGCCAACTCACGCAGACAAACGGAACCCCAAAGAAACCTACCACTCACCGGTCTGAGGCCCAGGTGAATGGACACAACACACAGTTGGAGAAAGGCTGTTTGGACAGCTTCAACAAGTTTCTGGACCTCTCACTCTTCAAACACAGGGGCTTCCTGATCTACATCGTAGGGAACGCGGTGATGTTCTTTGGTTTCTTCGCCCCTGTAGTGTTCCTGGCCCCTTACGCCCTGAGCCATGGCTTCGACGAGTATTCCTCCGCCTTCCTCTTGTCCATCATGGGCTTCGTAGACATGTTTGCCAGGCCGTTGACAGGGCTGATGGCTAACACTAAGTGGATCAGGCCCAGGATACAGTACTTCTTCAGCTTTGCCATCATCTATAATGGTTTATGCCACCTGCTGTGTCCCTTGGCCAGTGGGTATGGGGGGCTGGCCGCCTACTCAGTGTTCTTTGGCATAGCATTTGGAATGGTGTGTGCCCTGCTGTTTGAGACGCTCATGGACCTGGTGGGGCCTCAGCGGTTCTCCAGTGCAGTGGGACTGGCCACCATCATAGAGTGCTGCCCCGTACTCCTGGGACCACCTATTGGAGgaGCCTTGGTGGACACCTTTGGTGACTACAAGTACCTGTACCTCATGTGTGGAGCGGTGATGGTGTTCGCAGGACTCTTCCTCTTTGTTATGAATATCTACAACTACAGGATGCTGGAGCGGGAGAGGCGGCAGGAGGAGGGACAGGTAGAGGAGGGCTGTGAGAGCCAGGAGCAGGACCAGGAGCAGGGCCTGGGgctgagggagaggggagagacctCCTCAGAGGAGCAAggagaggcagggaaggaggctAAGAAGCAACATATCCCCTAGGGAGACGAATCAGAAGCGGAAGAGACTAAATTAAGCCATGCATGATACCACTGTTTACAAGTACACTCTCATATATTGATGCCAGTATATCAGTATATAGGCCTACCcaatactgtatatagtccaccccccccccccacccccccccccccccccccccggtattGAAATTTGGTAGATTCTCTGAAAAATATTAATCCCTAGTACAGAGCTCCAGATGCTGTTTAAATCTCCCTTTTCCACTGAGTGCCACCTAGGTGACTCCAGCGTTGCTCCCCTATTTTGTGGCTGCTTCTGAAGCTGAAAGCTTAattaacacacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>XM_036950572.1
ATTCAATGTAAAATATTTTGACACGCTTCAACTTtctgttgtgtgtatgtattccAAGTCGGATATCCACGTGTACAAACCACATTTGAGTCTTCGTTTGCTGAGGGTAGCACAAATCATCATTAGGCTACTTCTGAAATTACATTCTTAGAACCTAAACTAAAGTGCCCTCGTTCGTTTACGTGCTGCGGTTTTGCGTCTCATCAGGTAGACTGATGCAACTTCCATATCCCCCTGAGACACGAAAAAAACAAGTTTGGGATTTTTTTCACATAACATAAGTGTTGGAGGTATAAAAAAAAAGTGAACAATTATTTTATTAAACATGTCCCCTGCACCAGCATCTATTCTGCGGGACACCCCTCCGGacgggggctggggctgggccgtGGTGTTTGGGGCCTTCATCTCTATCGGCTTCTCGTATGCCTTCCCCAAAGCCCTCACTGTCTTCTTCAAAGACATCCAGCTGATCTTCGGTGCCTCCTACAGCCAGATTGCATGGATTTCTTCCATCATGCTGGCAGCAATGTATGCCGGTGGACCTATCAGCAGTATTCTGGTCAATCGCTATGGAAGCCGGCCTGTGGTCATAGCTGGTGGAGTGATGTGTGGCATTGGTATGGTGACTGCTTCTTTTGGCAATACCATTACGCATTTGTACATATGCGTAGGAGTCGTTGGAGGATTTGGTCTTTCTTTTAACCTCCAGCCATCCGTCACCATCATTGGGAAGTACTTCCAGGTCAAGAGGCCGTTAGCTAATGGGCTGGCCATGGCAGGAAGtccagtcttcctctgtaccttaGCACCTATCAACCAGTTCCTGTTTAACCAATTTGGCTGGAGGGGCAGTTTCTTCATCCTGGGAGCTCTGCTGCTCAACTGCTGTGTTGCCGGCTCTCTCATGAGGCCCATTTGTCCAAAGCCAACTGGAGGCCAACTCACGCAGACAAACGGAACCCCAAAGAAACCTACCACTCACCGGTCTGAGGCCCAGGTGAATGGACACAACACACAGTTGGAGAAAGGCTGTTTGGACAGCTTCAACAAGTTTCTGGACCTCTCACTCTTCAAACACAGGGGCTTCCTGATCTACATCGTAGGGAACGCGGTGATGTTCTTTGGTTTCTTCGCCCCTGTAGTGTTCCTGGCCCCTTACGCCCTGAGCCATGGCTTCGACGAGTATTCCTCCGCCTTCCTCTTGTCCATCATGGGCTTCGTAGACATGTTTGCCAGGCCGTTGACAGGGCTGATGGCTAACACTAAGTGGATCAGGCCCAGGATACAGTACTTCTTCAGCTTTGCCATCATCTATAATGGTTTATGCCACCTGCTGTGTCCCTTGGCCAGTGGGTATGGGGGGCTGGCCGCCTACTCAGTGTTCTTTGGCATAGCATTTGGAATGGTGTGTGCCCTGCTGTTTGAGACGCTCATGGACCTGGTGGGGCCTCAGCGGTTCTCCAGTGCAGTGGGACTGGCCACCATCATAGAGTGCTGCCCCGTACTCCTGGGACCACCTATTGGAGgaGCCTTGGTGGACACCTTTGGTGACTACAAGTACCTGTACCTCATGTGTGGAGCGGTGATGGTGTTCGCAGGACTCTTCCTCTTTGTTATGAATATCTACAACTACAGGATGCTGGAGCGGGAGAGGCGGCAGGAGGAGGGACAGGTAGAGGAGGGCTGTGAGAGCCAGGAGCAGGACCAGGAGCAGGGCCTGGGgctgagggagaggggagagacctCCTCAGAGGAGCAAggagaggcagggaaggaggctAAGAAGCAACATATCCCCTAGGGAGACGAATCAGAAGCGGAAGAGACTAAATTAAGCCATGCATGATACCACTGTTTACAAGTACACTCTCATATATTGATGCCAGTATATCAGTATATAGGCCTACCcaatactgtatatagtccaccccccccccccacccccccccccccccccccccggtattGAAATTTGGTAGATTCTCTGAAAAATATTAATCCCTAGTACAGAGCTCCAGATGCTGTTTAAATCTCCCTTTTCCACTGAGTGCCACCTAGGTGACTCCAGCGTTGCTCCCCTATTTTGTGGCTGCTTCTGAAGCTGAAAGCTTAattaacacacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>XM_036950573.1
ATTCAATGTAAAATATTTTGACACGCTTCAACTTtctgttgtgtgtatgtattccAAGTCGGATATCCACGTGTACAAACCACATTTGAGTCTTCGTTTGCTGAGGGTAGCACAAATCATCATTAGGCTACTTCTGAAATTACATTCTTAGAACCTAAACTAAAGTGCCCTCGTTCGTTTACGTGCTGCGGTTTTGCGTCTCATCAGGTAGACTGATGCAACTTCCATATCCCCCTGAGACACGAAAAAAACAAGTTTGGGATTTTTTTCACATAACATAAGTGTTGGAGAAACATGTCCCCTGCACCAGCATCTATTCTGCGGGACACCCCTCCGGacgggggctggggctgggccgtGGTGTTTGGGGCCTTCATCTCTATCGGCTTCTCGTATGCCTTCCCCAAAGCCCTCACTGTCTTCTTCAAAGACATCCAGCTGATCTTCGGTGCCTCCTACAGCCAGATTGCATGGATTTCTTCCATCATGCTGGCAGCAATGTATGCCGGTGGACCTATCAGCAGTATTCTGGTCAATCGCTATGGAAGCCGGCCTGTGGTCATAGCTGGTGGAGTGATGTGTGGCATTGGTATGGTGACTGCTTCTTTTGGCAATACCATTACGCATTTGTACATATGCGTAGGAGTCGTTGGAGGATTTGGTCTTTCTTTTAACCTCCAGCCATCCGTCACCATCATTGGGAAGTACTTCCAGGTCAAGAGGCCGTTAGCTAATGGGCTGGCCATGGCAGGAAGtccagtcttcctctgtaccttaGCACCTATCAACCAGTTCCTGTTTAACCAATTTGGCTGGAGGGGCAGTTTCTTCATCCTGGGAGCTCTGCTGCTCAACTGCTGTGTTGCCGGCTCTCTCATGAGGCCCATTTGTCCAAAGCCAACTGGAGGCCAACTCACGCAGACAAACGGAACCCCAAAGAAACCTACCACTCACCGGTCTGAGGCCCAGGTGAATGGACACAACACACAGTTGGAGAAAGGCTGTTTGGACAGCTTCAACAAGTTTCTGGACCTCTCACTCTTCAAACACAGGGGCTTCCTGATCTACATCGTAGGGAACGCGGTGATGTTCTTTGGTTTCTTCGCCCCTGTAGTGTTCCTGGCCCCTTACGCCCTGAGCCATGGCTTCGACGAGTATTCCTCCGCCTTCCTCTTGTCCATCATGGGCTTCGTAGACATGTTTGCCAGGCCGTTGACAGGGCTGATGGCTAACACTAAGTGGATCAGGCCCAGGATACAGTACTTCTTCAGCTTTGCCATCATCTATAATGGTTTATGCCACCTGCTGTGTCCCTTGGCCAGTGGGTATGGGGGGCTGGCCGCCTACTCAGTGTTCTTTGGCATAGCATTTGGAATGGTGTGTGCCCTGCTGTTTGAGACGCTCATGGACCTGGTGGGGCCTCAGCGGTTCTCCAGTGCAGTGGGACTGGCCACCATCATAGAGTGCTGCCCCGTACTCCTGGGACCACCTATTGGAGgaGCCTTGGTGGACACCTTTGGTGACTACAAGTACCTGTACCTCATGTGTGGAGCGGTGATGGTGTTCGCAGGACTCTTCCTCTTTGTTATGAATATCTACAACTACAGGATGCTGGAGCGGGAGAGGCGGCAGGAGGAGGGACAGGTAGAGGAGGGCTGTGAGAGCCAGGAGCAGGACCAGGAGCAGGGCCTGGGgctgagggagaggggagagacctCCTCAGAGGAGCAAggagaggcagggaaggaggctAAGAAGCAACATATCCCCTAGGGAGACGAATCAGAAGCGGAAGAGACTAAATTAAGCCATGCATGATACCACTGTTTACAAGTACACTCTCATATATTGATGCCAGTATATCAGTATATAGGCCTACCcaatactgtatatagtccaccccccccccccacccccccccccccccccccccggtattGAAATTTGGTAGATTCTCTGAAAAATATTAATCCCTAGTACAGAGCTCCAGATGCTGTTTAAATCTCCCTTTTCCACTGAGTGCCACCTAGGTGACTCCAGCGTTGCTCCCCTATTTTGTGGCTGCTTCTGAAGCTGAAAGCTTAattaacacacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: monocarboxylate transporter 2-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567510.2 False 2045 mRNA 0.52 5 71678389 71688655
XM_036950572.1 False 2201 mRNA 0.51 5 71678583 71688655
XM_036950573.1 True 2170 mRNA 0.51 5 71678583 71688655

Neighbor

gene id symbol gene type direction distance location
kbtbd8 LOC106565838 coding upstream 373 71670655 ~ 71678016 (+)
slc25a26 slc25a26 coding upstream 160023 71449660 ~ 71518366 (+)
LOC110494500 NA coding upstream 505145 71172013 ~ 71173244 (+)
slc2a9l1 LOC106565846 coding upstream 816262 70851928 ~ 70944023 (+)
LOC110494494 atxn7 coding upstream 830999 70809971 ~ 70847390 (+)
LOC118940657 NA coding downstream 13990 71702645 ~ 71702701 (+)
LOC110494505 LOC102209545 coding downstream 291245 71979900 ~ 72221849 (+)
LOC110494508 LOC106565828 coding downstream 764704 72453359 ~ 72523767 (+)
LOC110494510 LOC106565827 coding downstream 858497 72547152 ~ 72585158 (+)
LOC110494511 LOC106565826 coding downstream 898133 72586788 ~ 72621297 (+)
G1483842 NA non-coding upstream 22606 71653122 ~ 71655783 (+)
G1483735 NA non-coding upstream 199646 71478468 ~ 71478743 (+)
G1483721 NA non-coding upstream 230151 71447907 ~ 71448238 (+)
G1483989 NA non-coding downstream 3267 71691922 ~ 71692164 (+)
G1484054 NA non-coding downstream 82152 71770807 ~ 71776235 (+)
G1484093 NA non-coding downstream 136775 71825430 ~ 71827175 (+)
G1484102 NA non-coding downstream 144122 71832777 ~ 71833688 (+)
G1484247 NA non-coding downstream 197426 71886081 ~ 71886293 (+)
G1483638 NA other upstream 296117 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 497960 71178513 ~ 71180429 (+)
nampt2 LOC106565851 other upstream 1022332 70638204 ~ 70656059 (+)
G1480254 pad other upstream 2679206 68934326 ~ 68999183 (+)
G1484782 NA other downstream 616068 72304723 ~ 72305412 (+)
G1484897 NA other downstream 765908 72454563 ~ 72454924 (+)
LOC110494525 LOC106565811 other downstream 1356082 73044346 ~ 73049958 (+)
G1485260 NA other downstream 1434171 73122826 ~ 73125356 (+)
G1485819 NA other downstream 1592605 73281260 ~ 73282019 (+)

Expression


Co-expression Network