LOC110494510 (LOC106565827)


Basic Information

Item Value
gene id LOC110494510
gene name LOC106565827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72547152 ~ 72585158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569639.2
GGACGACGTCACCACCACTGCACTCCATAGCTGACAGGCTGCGAGAGAGCTGCGTGCGAATGCTTCCTTAAACACGCTGAAGATTCCCCGTGTAGAATACAAACCAGGGCAGAGCATAATAAGTCAAAGCAAACTTGATCGGGACCCTTTTAAACGCTTTATAAAGGAGGCTGCTGGATGAGTGGTCACCATGTCTCCCTTCTTACGCATAGCCTTTAATGCGTTTGATGTGGGCGTCTTGCCACCCCTGACTGACGCTCCCTTCTGTGCAATTAAGATGAAGGAGTCCCTCAGCACTGatcggGGGAAGACCCTAGTCCAGAGGAAACCCACGATGTACCCTGCCTGGAAGTCCACTTTCGATGCCCACATCTACGAGGGCCGTGTCCTCCAAGTGGTTCTGATGAAGACCGCAGAGGAGCCATTGGCCGAGGCCACGGTGGGCGTGTCCGTACTGGCTGAGCGCTGTAAAAAGGGCAACGGCTGTGCTGAATTCTGGGTAGACCTGCAGCCTTCTGGGAAGGTTCAGATGGTCGTCCAGTTCTTTGTGGAGGACACAGACACAGCAGTGTTTAAGTCGAACGTGAAGGGGCGTGAAGAGGAGGATGGGGCGATGACACTGACCCGAAGGAGAGGAGCCATGAAACAGGCCAAGGTCCATTTCATCAAGAACCATGAGTTCACAGCCACTTTCTTCGGACAGCCCACCTTCTGCTCTGTCTGCCGGGAGTTTGTCTGGGGATTCAACAAGCAAGGCTACAAGTGCAGACAATGCAACGCCGCCATCCACAAGAAATGTATTGACAAAATCATCGGGAGGTGCACAGGAACAGCAGCCAACAGCAGAGAGACTATGTTCCAGAAGGAGCGTTTTAAGATCGACATGCCACATCGCTTTAAGATCCACAACTACATGAGCCCTACCTTCTGTGACCACTGTGGCAGTATGCTGTGGGGAATGGTCAAGCAGGGCCTCAAGTGTGAAGACTGTGGCATGAACTCCCATCACAAATGTGAGAAGAAAGTGGGAAATCTCTGTGGAATCAACCAGAAACTCCTGGCTGAGGCCCTCAACCAAGTTAGCcaaAAATCCACAAGACGGTCTGAATCCAGCAACTCTGAGTCAACGGACATTGGAATCTACCAGGACTTCAACAAAAGCCCAGGAGCGGACCCTAGTGAAGGCTATGAGAAGCTGTGGGAGGGAGGTAAGGGCCCTGCCCCAGCCAGCATCACCCCCAAGACCCGCCTCACCATTGACAGCTTTGTGTTCCACAAGGTGCTGGGCAAGGGCAGCTTTGGCAAGGTCCTGCTGGCTGAGCTGAGGGGGCGAGGACAGTACTTTGCTGTGAAGGCCCTGAAGAAAGACGTGGTTCTGATGGATGATGATGTGGAGTGTACCATGGTGGAGAAGAGAGTCCTGGCCCTGGCCTGGGACAACCCCTTCCTCACACACCTCTACTCCACCTTCCAGACCAGGgaaCACCTGTTTTTCGTGATGGAGTACCTGAATGGAGGAGACCTGATGTTCCACATTCAGGATAAGGGTCGCTTTGACCTCTACAGAGCCTCGTTCTACTCAGCAGAGATCATAATTGGACTGCAGTTTCTCCACTCAAAAGGAATAATTTACAGGGACCTGAAGCTGGACAATGTGATGCTGGACAGAGACGGCCACATTAAGATCGCTGACTTTGGGATGTGCAAGGAGAACGTGTTTGGAGAGAATCGGGCCACTACTTTCTGTGGGACGCCAGACTACATCGCACCAGagATCCTGCTGGGACAGAAGTACACCTTCTCCGTGGACTGGTGGTCGTTTGGGGTACTGGTGTATGAGATGCTGATCGGCCAGTCGCCGTTCCAGGGTGATGACGAGGATGAGCTGTTTGAGTCCATCAGGATGGACGTGCCTCACTACCCTCGCTGGATCACCAAGGAGGCTAAGGACCTATTGGAGAAGCTGTTTGAAAGAGACCCCAGTCGCAGGCTAGGTGTGGTGGACAACATCCGCGGCCACTCCTTCTTCAAGAACCTCAACTGGCCTGCcctggagaagagagaggtggacCCCCCCTTCAAACCTAAAGTGAAAGGCCCCAATGACTGCAACAACTTTGACCGGGAGTTCCTGAGTGAGAAGCCCCGCCTCTCCCACACGGACAAGAACCTAATCGACTCTATGGACCAGACAGCCTTTGCAGGCTTCTCTTTCATCAACCTCAAGATGCAACACATTATGGACAAATGAAGGCACAACAAGATTCCCCCATCTCTTTGTTTCAACCGCACCATTATAAACGCataggaaagggaggagggggaaaCCAGTGTTGCATTTATCTCTGTGGTGGTTCCTTCAATAATGGTGTCTTTCTTTTCCTTGGGATCAAACCTTGAATTAATCCATGTACTGTACTTTATCCCCCAACATACATCAACACACTCATTTACACACACCCCATAGTTCAGTTGTAGTTCAGTTTTAGTATTGTCCATGCTGGGATGTCAGGGGTCAAATGTGGCTCTCTCACACACCCGTGTGCTCTGCCTACTGTATGTCACTCTTTCCCGTCCCATCATTCACAtcattgttttgtgtgtgtgtttttactgtccttgtggggaccagaagtcctcacaaggatagtaaaacaatgaTCATTCAGGCAAGTGAGGACATTTTGCTGGTCTTCACAaggaaaaatgctattttagACTTAGGGATTAGGGTTATAATTAAGGTTGGGGCTAGGGGTTACGGTTAGGTAtagtttggggttaaggttagatttaggggttagggaaaataagaTTTTGGATGGCAATCAAGTTTTTGGCCCCCACAAGGATAGCAATATagaagtgtgggtgtgtgtgtgttggagcacTCACTTACTGTGCATAAATGTATGCATGAATGAATATGTCTGAGTGACAGCATGAATCTCCagtatattttaaatgttttataatgAAAAGAACGTTTACTTTTTCAGGTGCGAATTCAGTACCCTGTGTAAGGTACAATTAATTAATTTGAAAGggtgataaaaaaaaacaaatgatagaacACCAAAGTTACAGGACCAGTAGAGGATGCACAGATTTATACAGGCATGGATAGTCTCTCACCTTGGTCTGCCCATCCACATGATATAAAACTAAGGATTTGTAAATGGTACTGCAGCTTCCCCACTCTCCGGAACAAACCAGAGCTACTCTGATCAAACCACAGCTACCCTGATTCAGATCTGCGTTACAGTAGTGTGAAATGGAGTGGGACATCATACTGGAAGGAGTTAATGTAATGGTACTCTGCAGTCATTCGTCTTGAAGGTtatgggtgtgtgttgggggggattCCTTTAGAAAAAGGATGGATAAATTGGGTCTTGTGTTACTTGAATGTAGGTATTTTAAAaagcaaataataataatatgctgtACGTTAAATGAATATGTGcattgccttcggaaagtattcacaccccttgactttttccacatattggtattacagcctgaatttaacatttattaaattaggtttttggtcactggcctacaaaaacaataacccattatgtcaaagtggaattgttggaaaaaaaaaaacatttttacagattaattcaaaatgaaaagcttatgtcttgagtcaataagtattcaacctaaCCTCTTTCTTATGGCAAGATTAAATtatttcaggagtaaaaatgtgcttttcaagtcccaagttgcatggactcactttgtgtgcaataatagtgtttttaACACAGTCATAGAAAAAAgaccatctctgtaccccacacatactgtaagggcCTTCAGtgaagcagtgaatttcaaacccagattcaacctcaaagaccagggaggttttccaatgccttgtaaagaagggaacctattcataatgggtaaaaaataaaataaaaagacactgaatattcctttgaacatggtaaagttattacactttggatggtgtatcaatacacccagtcactacaaagataaaggcATCTTTCCTAACTCCATTGCCAGACAGAAAGGAAACCACTCCGGCCAATggcgactttaaaacagttacagagtttaatggatgtgataggagaaaactgaggatggatcaacaacattatagttactccacaatacttacCTAATACACAAAGGGAAAgatggaagcctgtacagaataaaaaaaacaGGGCAAAGCAATGCACttcttgtcctgaatacaaagtgtttgtttggggcaaatctaatacaaaacatttctgagtaacactctccatattttcaagcatagtggttgcATCATCTTATGGGTATATGtctaatcgttaaggactggggagtttttcaggatcaaatagaaatggaatggagcacaggcaaaatcctagaggaaaacctggatcAGTCAGCTTTCCACCAGACTCTGgaagataaattcacctttcagcaggacaacctaAAACATAAGACCACATCGACActggttgcttaccaagaagacagtgaatgttctggagtggccaagttacagttttgacttaaatctatggcagaatctatggcaaaacctgaaaattgttgtctagcaatgatccacAACCAATTTGAaacagcttgaagaattttgaaaaggaGTAATGTGCAAATGTTGTACAGTCCAGGTGTGGCATGTtcatagagacttacccagaaaaagactccgctgtaatcgctgccaaaggttattctacaaagtattgactgggGTGTGAATACCTATGAACATTTCTGTACTTAATTTTCAAtccatttgaaaacatttctaaaaaaacatattttcactttgtcattttgtgttgtgtgtagatagataagagaaaaatatttaatcaattttcaattcaggctgaaagacaacaaaatgtggaataagccgaggggtataaatactttctgaaggcactgtatattgcccTAAATAGTTACAATATTTGGTGACGTAAggatatactttttttttactgTCTTCGTATTTTACGTCTGATTATAAATAAACAGATATTTAACTCTAAA

Function

NR:

description
protein kinase C delta type-like

GO: NA

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569639.2 True 5085 mRNA 0.44 17 72547152 72585158

Neighbor

gene id symbol gene type direction distance location
LOC110494508 LOC106565828 coding upstream 23385 72453359 ~ 72523767 (+)
LOC110494505 LOC102209545 coding upstream 327078 71979900 ~ 72221849 (+)
LOC118940657 NA coding upstream 844451 71702645 ~ 71702701 (+)
LOC110493246 LOC106565837 coding upstream 858497 71678389 ~ 71688655 (+)
kbtbd8 LOC106565838 coding upstream 869136 71670655 ~ 71678016 (+)
LOC110494511 LOC106565826 coding downstream 1630 72586788 ~ 72621297 (+)
LOC110494512 LOC106565824 coding downstream 16167 72601325 ~ 72612798 (+)
LOC110494513 LOC106565822 coding downstream 45164 72630322 ~ 72639097 (+)
LOC110494516 LOC105017315 coding downstream 233010 72818168 ~ 72828562 (+)
LOC110494520 LOC106565815 coding downstream 277201 72862359 ~ 72864606 (+)
G1484943 NA non-coding upstream 2709 72544161 ~ 72544443 (+)
G1484896 NA non-coding upstream 92996 72453953 ~ 72454156 (+)
G1484886 NA non-coding upstream 102429 72444508 ~ 72444723 (+)
G1484872 NA non-coding upstream 121592 72425316 ~ 72425560 (+)
G1484855 NA non-coding upstream 141945 72404800 ~ 72405207 (+)
G1484985 NA non-coding downstream 74848 72660006 ~ 72675667 (+)
G1485006 NA non-coding downstream 104486 72689644 ~ 72693477 (+)
G1485065 NA non-coding downstream 204913 72790071 ~ 72790947 (+)
G1485070 NA non-coding downstream 212737 72797895 ~ 72798215 (+)
G1485023 LOC106565817 non-coding downstream 261711 72846869 ~ 72852122 (+)
G1484897 NA other upstream 92228 72454563 ~ 72454924 (+)
G1484782 NA other upstream 241740 72304723 ~ 72305412 (+)
G1483638 NA other upstream 1164880 71381944 ~ 71382272 (+)
G1483346 LOC106565841 other upstream 1366723 71178513 ~ 71180429 (+)
LOC110494494 atxn7 other upstream 1705922 70809971 ~ 70847390 (+)
LOC110494525 LOC106565811 other downstream 459579 73044346 ~ 73049958 (+)
G1485260 NA other downstream 537668 73122826 ~ 73125356 (+)
G1485819 NA other downstream 696102 73281260 ~ 73282019 (+)
G1486811 NA other downstream 1393732 73978890 ~ 73979435 (+)
LOC110493252 LOC106565788 other downstream 1803378 74388428 ~ 74432420 (+)

Expression


Co-expression Network